mRNA_1932 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163584
Unique NamemRNA_1932
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A835Z4I9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I9_9STRA)

HSP 1 Score: 345 bits (886), Expect = 1.000e-119
Identity = 177/191 (92.67%), Postives = 184/191 (96.34%), Query Frame = 1
Query:    1 MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERLENQEREIAIKEGQRRALKKERKKYYDKKGRPLVSMSQIPEDVRLPRDRAKKPAEVVTNDEAEDIFSSDDEGESAQESKA 573
            MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPP IDSIEDVQCTDER+QSIRDSYIEHLKGQKAELIERLEN+E+EIAIKE QRRALKKERKKYYDKK RPLV ++QIPE+VRLPRD+AKKPAEVV NDEAEDIFSSDDE ESAQE KA
Sbjct:    1 MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALKKERKKYYDKKSRPLVPIAQIPENVRLPRDKAKKPAEVVANDEAEDIFSSDDEAESAQEPKA 191          
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A835ZEC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC6_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.200e-40
Identity = 64/111 (57.66%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    4 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERL 336
            PV   L D+ Q+Y V+++VAPEGT QKS+++ IR++GC+ +I +AN +ARKLRDSN FFDVY ++T+EWAPLPP +D I+ V  TD RVQ++ DS+ EH KGQK E++ERL
Sbjct:    6 PVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERL 116          
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A835Z6B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B0_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.790e-38
Identity = 77/188 (40.96%), Postives = 111/188 (59.04%), Query Frame = 1
Query:    1 MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERLENQEREIAIKEGQRRALKKERKKYYDKKGRPLVSMSQIPEDVRLPRDRAKKPAEVVTNDEAEDIFSSDDEGESAQE 564
            +PV DRL++  Q + V+S++AP GT Q + D+MIR+YGC  T++ AN +AR LRD+N+ +DV  +   EW PLPP+ + I+ V  TD+RV  IR++YI HLKG+KA +IERL+  E                     DKK RP V + QIP + R    + KK +  V   E  D   +DDE E+ ++
Sbjct:   18 LPVPDRLKNPKQNFTVLSVIAPTGTNQTAPDLMIRVYGCCDTLESANAFARSLRDANDVYDVLVMPNFEWIPLPPNFEEIDYVNYTDKRVTEIRENYISHLKGEKAAMIERLQQDEXXXXXXXXXXXXXXXXXXXXXDKKRRPKVPIDQIPIEYRR---KCKKDSTGVEKLEDSDFSDADDEKEAVED 202          
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A835YQY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.460e-38
Identity = 60/111 (54.05%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    4 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERL 336
            PV   L D+ Q+Y V+++VAP GT QK+K+++IR++GCR ++ +AN +A+ LR+ NNFFDVYT++T+EWAPLPP ID I++V  TD RVQ++ DS+ EH KG+K E+++RL
Sbjct:    6 PVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRL 116          
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A836CNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB8_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.970e-36
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    4 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAE 321
            PV DRLRD  Q++ V+++VAP GT Q+ KDM+IRI+GC+ T ++A+ +AR LRDSN+F+DVY   T+EW PLPP + ++E+V  TD RVQ I D++   LKG+KAE
Sbjct:   19 PVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 124          
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A836CF96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF96_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.800e-36
Identity = 55/101 (54.46%), Postives = 83/101 (82.18%), Query Frame = 1
Query:   34 QKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERL 336
            Q++ V+++VAPEGT QKS+DM+IR+YGC+ T+ +AN +A+ +RDS + +DVY ++T+ WAPLPP I  I++VQ TD RVQ++ DSY+EH +GQK +++ERL
Sbjct:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 101          
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A6C0CR99_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CR99_9ZZZZ)

HSP 1 Score: 67.4 bits (163), Expect = 2.050e-10
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   13 DRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSY 291
            D ++   Q YA++SIVAP  T QKS  + ++I G   T++QA  +A++L + +  FD+     +EW  LPP +D I D    D  + ++   Y
Sbjct:   46 DSIKLPKQNYALISIVAPHATNQKSDKLCVKIKGVFDTLEQAQAHAQRLMNMDATFDIIVTSMYEWLLLPPPLDHIHDQVYMDNELNTLISEY 138          
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Match: A0A835YPU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.420e-8
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1
Query:  223 PHIDSIEDVQCTDERVQSIRDSYIEHLKGQKAELIERLENQERE 354
            PH+  I++VQ TD R+QSIRDSYI+H+KGQK ++IERLE  +R+
Sbjct:   54 PHVTQIDNVQFTDSRIQSIRDSYIDHVKGQKRDMIERLEEVDRQ 97          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163584 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835Z4I9_9STRA1.000e-11992.67Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZEC6_9STRA6.200e-4057.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6B0_9STRA2.790e-3840.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQY9_9STRA3.460e-3854.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CNB8_9STRA1.970e-3654.72Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CF96_9STRA2.800e-3654.46Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6C0CR99_9ZZZZ2.050e-1034.41Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A835YPU8_9STRA7.420e-861.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:543674..544249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163584|e_gw1.26.188.1
Max annot lvl10239|Viruses
EggNOG OGs4QE6F@10239|Viruses,4QXY1@35237|dsDNA viruses no RNA stage
Evalue5.55e-12
Seed ortholog97195.Q91DI1_HAV01
Hectar predicted targeting categoryother localisation
TranscriptId163906
TrackFilteredModels1
ProteinId163584
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163584gene_1932Tribonema minus UTEX_B_3156 geneContig_26 543674..544249 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1932_1exon_1932_1Tribonema minus UTEX_B_3156 exonContig_26 543674..544249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1932CDS_1932Tribonema minus UTEX_B_3156 CDSContig_26 543674..544249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163584Trimin1|163584|e_gw1.26.188.1Tribonema minus UTEX_B_3156 polypeptideContig_26 543674..544249 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1932 ID=mRNA_1932|Name=jgi.p|Trimin1|163584|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=576bp|location=Sequence derived from alignment at Contig_26:543674..544249+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTAGCTGACAGACTGCGTGACGCGGACCAGAAGTATGCAGTGGT
GAGCATAGTAGCACCAGAGGGCACAGCCCAAAAATCCAAGGACATGATGA
TACGCATCTACGGATGCCGCCCAACGATTCAGCAGGCTAATGAGTATGCG
CGCAAGCTGCGTGACTCCAACAATTTCTTTGATGTTTACACGATCGAAAC
GCATGAGTGGGCACCCCTTCCGCCTCACATAGACAGCATTGAAGACGTGC
AGTGCACAGACGAGCGCGTACAAAGCATTCGGGACTCTTACATTGAGCAC
CTCAAGGGGCAGAAAGCCGAGCTGATCGAACGTCTCGAGAACCAAGAGAG
GGAAATCGCTATTAAAGAGGGGCAACGCCGGGCGCTCAAGAAGGAGAGGA
AAAAGTATTACGACAAAAAGGGTAGGCCTCTTGTAAGTATGAGTCAAATA
CCCGAGGATGTGCGCCTACCTAGGGACAGGGCTAAGAAGCCTGCTGAAGT
TGTCACCAATGACGAGGCTGAAGACATCTTTTCAAGCGATGACGAGGGGG
AATCTGCACAGGAGTCAAAGGCATGA
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protein sequence of jgi.p|Trimin1|163584

>Trimin1|163584|e_gw1.26.188.1 ID=Trimin1|163584|e_gw1.26.188.1|Name=jgi.p|Trimin1|163584|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=192bp
MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYA
RKLRDSNNFFDVYTIETHEWAPLPPHIDSIEDVQCTDERVQSIRDSYIEH
LKGQKAELIERLENQEREIAIKEGQRRALKKERKKYYDKKGRPLVSMSQI
PEDVRLPRDRAKKPAEVVTNDEAEDIFSSDDEGESAQESKA*
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mRNA from alignment at Contig_26:543674..544249+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1932 ID=mRNA_1932|Name=jgi.p|Trimin1|163584|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=576bp|location=Sequence derived from alignment at Contig_26:543674..544249+ (Tribonema minus UTEX_B_3156 )
ATGCCCGTAGCTGACAGACTGCGTGACGCGGACCAGAAGTATGCAGTGGT GAGCATAGTAGCACCAGAGGGCACAGCCCAAAAATCCAAGGACATGATGA TACGCATCTACGGATGCCGCCCAACGATTCAGCAGGCTAATGAGTATGCG CGCAAGCTGCGTGACTCCAACAATTTCTTTGATGTTTACACGATCGAAAC GCATGAGTGGGCACCCCTTCCGCCTCACATAGACAGCATTGAAGACGTGC AGTGCACAGACGAGCGCGTACAAAGCATTCGGGACTCTTACATTGAGCAC CTCAAGGGGCAGAAAGCCGAGCTGATCGAACGTCTCGAGAACCAAGAGAG GGAAATCGCTATTAAAGAGGGGCAACGCCGGGCGCTCAAGAAGGAGAGGA AAAAGTATTACGACAAAAAGGGTAGGCCTCTTGTAAGTATGAGTCAAATA CCCGAGGATGTGCGCCTACCTAGGGACAGGGCTAAGAAGCCTGCTGAAGT TGTCACCAATGACGAGGCTGAAGACATCTTTTCAAGCGATGACGAGGGGG AATCTGCACAGGAGTCAAAGGCATGA
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Coding sequence (CDS) from alignment at Contig_26:543674..544249+

>mRNA_1932 ID=mRNA_1932|Name=jgi.p|Trimin1|163584|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=576bp|location=Sequence derived from alignment at Contig_26:543674..544249+ (Tribonema minus UTEX_B_3156 )
ATGCCCGTAGCTGACAGACTGCGTGACGCGGACCAGAAGTATGCAGTGGT
GAGCATAGTAGCACCAGAGGGCACAGCCCAAAAATCCAAGGACATGATGA
TACGCATCTACGGATGCCGCCCAACGATTCAGCAGGCTAATGAGTATGCG
CGCAAGCTGCGTGACTCCAACAATTTCTTTGATGTTTACACGATCGAAAC
GCATGAGTGGGCACCCCTTCCGCCTCACATAGACAGCATTGAAGACGTGC
AGTGCACAGACGAGCGCGTACAAAGCATTCGGGACTCTTACATTGAGCAC
CTCAAGGGGCAGAAAGCCGAGCTGATCGAACGTCTCGAGAACCAAGAGAG
GGAAATCGCTATTAAAGAGGGGCAACGCCGGGCGCTCAAGAAGGAGAGGA
AAAAGTATTACGACAAAAAGGGTAGGCCTCTTGTAAGTATGAGTCAAATA
CCCGAGGATGTGCGCCTACCTAGGGACAGGGCTAAGAAGCCTGCTGAAGT
TGTCACCAATGACGAGGCTGAAGACATCTTTTCAAGCGATGACGAGGGGG
AATCTGCACAGGAGTCAAAGGCATGA
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