mRNA_1928 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130134
Unique NamemRNA_1928
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|130134 vs. uniprot
Match: A0A835Z5N9_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.790e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    4 DGTTALHHATARGDAEAVSILLTAGANPRLRTQFGQ 111
            DGTTALHHATARGDAEAVSILL AGANPRLRTQFGQ
Sbjct:    1 DGTTALHHATARGDAEAVSILLAAGANPRLRTQFGQ 36
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130134 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z5N9_9STRA7.790e-1397.22Ankyrin repeat-containing domain protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:535904..536323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130134|gw1.26.15.1
Hectar predicted targeting categoryother localisation
TranscriptId130456
TrackFilteredModels1
ProteinId130134
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130134gene_1928Tribonema minus UTEX_B_3156 geneContig_26 535904..536323 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1928_1exon_1928_1Tribonema minus UTEX_B_3156 exonContig_26 535904..536323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1928CDS_1928Tribonema minus UTEX_B_3156 CDSContig_26 535904..536323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130134Trimin1|130134|gw1.26.15.1Tribonema minus UTEX_B_3156 polypeptideContig_26 535904..536323 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1928 ID=mRNA_1928|Name=jgi.p|Trimin1|130134|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_26:535904..536323- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGGACGGGACCACTGCTCTTCACCATGCCACAGCTCGTGGTGATGCTGA
GGCAGTGAGCATACTGCTGACAGCTGGAGCCAATCCCCGCTTACGGACAC
AATTTGGGCAGACCCCTCTCCACTTTGCGAGTCTAGCAAAGAACACGATC
ATCGCCAATAAACTCATCCTTGCAGGCGGTCACGTTGATGCCACAGACAA
CGCATCGGAAAGCGCACTGCACTTTTCAACGAGGCTCAATGACGTGGCTA
TGGTGTACACGCTAATGTGTCATTCAGCGTCAGCCGATCTGGCAAACCTG
TTGGGTCAGACGCCGCTGCACATTGCAGCACGCTCGGCTCCTGCTGCCAT
CACCACGTTATTGATCCAAGCATCTCAAAACCTCAGCACAACAGATTTTC
AGGGAGAGAATCCGCTGCAT
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protein sequence of jgi.p|Trimin1|130134

>Trimin1|130134|gw1.26.15.1 ID=Trimin1|130134|gw1.26.15.1|Name=jgi.p|Trimin1|130134|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
EDGTTALHHATARGDAEAVSILLTAGANPRLRTQFGQTPLHFASLAKNTI
IANKLILAGGHVDATDNASESALHFSTRLNDVAMVYTLMCHSASADLANL
LGQTPLHIAARSAPAAITTLLIQASQNLSTTDFQGENPLH
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mRNA from alignment at Contig_26:535904..536323-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1928 ID=mRNA_1928|Name=jgi.p|Trimin1|130134|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_26:535904..536323- (Tribonema minus UTEX_B_3156 )
GAGGACGGGACCACTGCTCTTCACCATGCCACAGCTCGTGGTGATGCTGA
GGCAGTGAGCATACTGCTGACAGCTGGAGCCAATCCCCGCTTACGGACAC
AATTTGGGCAGACCCCTCTCCACTTTGCGAGTCTAGCAAAGAACACGATC
ATCGCCAATAAACTCATCCTTGCAGGCGGTCACGTTGATGCCACAGACAA
CGCATCGGAAAGCGCACTGCACTTTTCAACGAGGCTCAATGACGTGGCTA
TGGTGTACACGCTAATGTGTCATTCAGCGTCAGCCGATCTGGCAAACCTG
TTGGGTCAGACGCCGCTGCACATTGCAGCACGCTCGGCTCCTGCTGCCAT
CACCACGTTATTGATCCAAGCATCTCAAAACCTCAGCACAACAGATTTTC
AGGGAGAGAATCCGCTGCAT
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Coding sequence (CDS) from alignment at Contig_26:535904..536323-

>mRNA_1928 ID=mRNA_1928|Name=jgi.p|Trimin1|130134|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_26:535904..536323- (Tribonema minus UTEX_B_3156 )
GAGGACGGGACCACTGCTCTTCACCATGCCACAGCTCGTGGTGATGCTGA
GGCAGTGAGCATACTGCTGACAGCTGGAGCCAATCCCCGCTTACGGACAC
AATTTGGGCAGACCCCTCTCCACTTTGCGAGTCTAGCAAAGAACACGATC
ATCGCCAATAAACTCATCCTTGCAGGCGGTCACGTTGATGCCACAGACAA
CGCATCGGAAAGCGCACTGCACTTTTCAACGAGGCTCAATGACGTGGCTA
TGGTGTACACGCTAATGTGTCATTCAGCGTCAGCCGATCTGGCAAACCTG
TTGGGTCAGACGCCGCTGCACATTGCAGCACGCTCGGCTCCTGCTGCCAT
CACCACGTTATTGATCCAAGCATCTCAAAACCTCAGCACAACAGATTTTC
AGGGAGAGAATCCGCTGCAT
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