mRNA_19189 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155843
Unique NamemRNA_19189
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|155843 vs. uniprot
Match: A0A835Z3E7_9STRA (KAP NTPase domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.120e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVED 153
            MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVED
Sbjct:    3 MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVED 53
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BLAST of jgi.p|Trimin1|155843 vs. uniprot
Match: A0A835YXA7_9STRA (KAP NTPase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXA7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.770e-20
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVED 153
            MV+TIDDLDRCSK KIVNMLE VHLLLQIP API+AFLAIDPR++IAA+ED
Sbjct:    1 MVITIDDLDRCSKPKIVNMLEAVHLLLQIPSAPIIAFLAIDPRIVIAAIED 51
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BLAST of jgi.p|Trimin1|155843 vs. uniprot
Match: A0A8J2SSC4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSC4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.420e-8
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 MVVTIDDLDRC-SKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVED 153
            +V  +DDLDRC   DKI+ MLE V LLL I  AP++ FLAIDPR++++++E+
Sbjct:   90 IVAFVDDLDRCIGGDKILKMLEAVQLLLSIHAAPVITFLAIDPRIVVSSIEE 141
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BLAST of jgi.p|Trimin1|155843 vs. uniprot
Match: A0A6P5A1I9_BRABE (kinase D-interacting substrate of 220 kDa-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5A1I9_BRABE)

HSP 1 Score: 55.1 bits (131), Expect = 1.830e-7
Identity = 21/51 (41.18%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVED 153
            ++V +DDLDRC KDK++ ++E V +LL  P +  ++ LA+DPR+++ ++E+
Sbjct:  805 VIVVVDDLDRCPKDKVIKVIEAVGILLSDPNSHFISLLAVDPRIVVKSIEE 855
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BLAST of jgi.p|Trimin1|155843 vs. uniprot
Match: A0A6H5JLB7_9PHAE (KAP NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB7_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.410e-7
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVE 150
            +VV+ID+LDRC    IV +LE VHLLL+  +  +V  LA+DPRVII+A+E
Sbjct:  433 LVVSIDNLDRCPHRNIVKVLEAVHLLLERDQTNVVVILALDPRVIISAIE 482
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BLAST of jgi.p|Trimin1|155843 vs. uniprot
Match: D7FSL6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL6_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.660e-7
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVE 150
            +VV+ID+LDRC   +IV +LE VHLLL+     +   LA+DPRVIIAA+E
Sbjct:  573 LVVSIDNLDRCPHRQIVKVLEAVHLLLEKDNVNVAVMLALDPRVIIAAIE 622
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BLAST of jgi.p|Trimin1|155843 vs. uniprot
Match: A0A8K0A204_BRALA (KIDINS220 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A204_BRALA)

HSP 1 Score: 53.9 bits (128), Expect = 4.670e-7
Identity = 21/51 (41.18%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVED 153
            +VV +DDLDRC KD+++ ++E V +LL  P +  ++ LA+DPR+++ ++E+
Sbjct:  518 VVVVVDDLDRCPKDRVIKVIEAVGILLSDPNSYFISLLAVDPRIVVKSIEE 568
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BLAST of jgi.p|Trimin1|155843 vs. uniprot
Match: A0A8K0A0Q0_BRALA (KIDINS220 protein n=3 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A0Q0_BRALA)

HSP 1 Score: 53.9 bits (128), Expect = 4.680e-7
Identity = 21/51 (41.18%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVED 153
            +VV +DDLDRC KD+++ ++E V +LL  P +  ++ LA+DPR+++ ++E+
Sbjct:  812 VVVVVDDLDRCPKDRVIKVIEAVGILLSDPNSYFISLLAVDPRIVVKSIEE 862
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BLAST of jgi.p|Trimin1|155843 vs. uniprot
Match: A0A6P4YYF4_BRABE (kinase D-interacting substrate of 220 kDa-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YYF4_BRABE)

HSP 1 Score: 53.1 bits (126), Expect = 8.750e-7
Identity = 21/51 (41.18%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVED 153
            +VV +DDLDRC KD++  ++E V +LL  P +  ++ LA+DPR+++ ++E+
Sbjct:  799 VVVVVDDLDRCPKDRVTKVIEAVGILLSDPNSHFISLLAVDPRIVVKSIEE 849
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BLAST of jgi.p|Trimin1|155843 vs. uniprot
Match: C3YS08_BRAFL (KAP NTPase domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YS08_BRAFL)

HSP 1 Score: 53.1 bits (126), Expect = 8.750e-7
Identity = 21/51 (41.18%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVED 153
            +VV +DDLDRC KD++  ++E V +LL  P +  ++ LA+DPR+++ ++E+
Sbjct:  783 VVVVVDDLDRCPKDRVTKVIEAVGILLSDPNSHFISLLAVDPRIVVKSIEE 833
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155843 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3E7_9STRA3.120e-25100.00KAP NTPase domain-containing protein (Fragment) n=... [more]
A0A835YXA7_9STRA5.770e-2084.31KAP NTPase domain-containing protein n=1 Tax=Tribo... [more]
A0A8J2SSC4_9STRA2.420e-853.85Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6P5A1I9_BRABE1.830e-741.18kinase D-interacting substrate of 220 kDa-like n=1... [more]
A0A6H5JLB7_9PHAE3.410e-756.00KAP NTPase domain-containing protein n=1 Tax=Ectoc... [more]
D7FSL6_ECTSI4.660e-756.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A8K0A204_BRALA4.670e-741.18KIDINS220 protein n=1 Tax=Branchiostoma lanceolatu... [more]
A0A8K0A0Q0_BRALA4.680e-741.18KIDINS220 protein n=3 Tax=Branchiostoma lanceolatu... [more]
A0A6P4YYF4_BRABE8.750e-741.18kinase D-interacting substrate of 220 kDa-like n=1... [more]
C3YS08_BRAFL8.750e-741.18KAP NTPase domain-containing protein n=2 Tax=Branc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_450contigContig_450:794..946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155843|gw1.450.5.1
Max annot lvl2759|Eukaryota
EggNOG OGs2E19U@1|root,2S8MQ@2759|Eukaryota
Evalue7.63e-08
Seed ortholog2880.D7FSL6
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId156165
TrackFilteredModels1
ProteinId155843
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155843gene_19189Tribonema minus UTEX_B_3156 geneContig_450 794..946 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_19189_1exon_19189_1Tribonema minus UTEX_B_3156 exonContig_450 794..946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_19189CDS_19189Tribonema minus UTEX_B_3156 CDSContig_450 794..946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155843Trimin1|155843|gw1.450.5.1Tribonema minus UTEX_B_3156 polypeptideContig_450 794..946 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_19189 ID=mRNA_19189|Name=jgi.p|Trimin1|155843|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=153bp|location=Sequence derived from alignment at Contig_450:794..946+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTGACCATCGATGACCTTGACCGCTGCTCCAAGGACAAGATCGT
TAACATGTTGGAGACTGTCCATCTGCTGCTGCAAATCCCCAAGGCGCCCA
TTGTGGCATTCCTGGCTATTGACCCACGCGTCATCATTGCTGCAGTGGAG
GAC
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protein sequence of jgi.p|Trimin1|155843

>Trimin1|155843|gw1.450.5.1 ID=Trimin1|155843|gw1.450.5.1|Name=jgi.p|Trimin1|155843|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=51bp
MVVTIDDLDRCSKDKIVNMLETVHLLLQIPKAPIVAFLAIDPRVIIAAVE
D
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mRNA from alignment at Contig_450:794..946+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_19189 ID=mRNA_19189|Name=jgi.p|Trimin1|155843|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=153bp|location=Sequence derived from alignment at Contig_450:794..946+ (Tribonema minus UTEX_B_3156 )
ATGGTGGTGACCATCGATGACCTTGACCGCTGCTCCAAGGACAAGATCGT
TAACATGTTGGAGACTGTCCATCTGCTGCTGCAAATCCCCAAGGCGCCCA
TTGTGGCATTCCTGGCTATTGACCCACGCGTCATCATTGCTGCAGTGGAG
GAC
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Coding sequence (CDS) from alignment at Contig_450:794..946+

>mRNA_19189 ID=mRNA_19189|Name=jgi.p|Trimin1|155843|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=153bp|location=Sequence derived from alignment at Contig_450:794..946+ (Tribonema minus UTEX_B_3156 )
ATGGTGGTGACCATCGATGACCTTGACCGCTGCTCCAAGGACAAGATCGT
TAACATGTTGGAGACTGTCCATCTGCTGCTGCAAATCCCCAAGGCGCCCA
TTGTGGCATTCCTGGCTATTGACCCACGCGTCATCATTGCTGCAGTGGAG
GAC
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