mRNA_19088 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144445
Unique NamemRNA_19088
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|144445 vs. uniprot
Match: A0A836CE75_9STRA (MYND-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE75_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.920e-49
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    1 KSIYTAPESTSEVALALGAHTVRRSRTKWCAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQLMAA 231
            KSIYTAPESTSEVALALGAHTVRRSRTKWCAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQLMAA
Sbjct:    1 KSIYTAPESTSEVALALGAHTVRRSRTKWCAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQLMAA 77
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BLAST of jgi.p|Trimin1|144445 vs. uniprot
Match: A0A835ZAG0_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAG0_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.280e-40
Identity = 68/79 (86.08%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 KSIYTAPESTSEVALALGAHTV--RRSRTKWCAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQLMAA 231
            +SIYTAPESTS VALALGAHTV  RRSRTKWCA CGTSATSARPLKKC  CHAVEYC SECQLSHWRQAH+HAC  MAA
Sbjct:   34 ESIYTAPESTSGVALALGAHTVTVRRSRTKWCAVCGTSATSARPLKKCGGCHAVEYCSSECQLSHWRQAHKHACHFMAA 112
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BLAST of jgi.p|Trimin1|144445 vs. uniprot
Match: A0A835ZGG4_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGG4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 8.910e-28
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:   64 VRRSRTKWCAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQLMAA 231
            VRRSRTKWCAAC T ATSARPLKKC RCHAVEYC SECQL+HWRQAH+HACQLMAA
Sbjct:  296 VRRSRTKWCAACSTCATSARPLKKCGRCHAVEYCSSECQLAHWRQAHKHACQLMAA 351
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BLAST of jgi.p|Trimin1|144445 vs. uniprot
Match: A0A835Z545_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z545_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.450e-9
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   82 KWCAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQLMA 228
            ++CA CG +    +  KKC  C +V+YCG+ECQLSHW+Q HR  C+ +A
Sbjct: 1198 RFCAMCGEAPAPRQHFKKCGTCRSVQYCGAECQLSHWQQQHRRVCRQLA 1246
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BLAST of jgi.p|Trimin1|144445 vs. uniprot
Match: A0A8J9S8G0_9CHLO (Probable ubiquitin carboxyl-terminal hydrolase 17 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S8G0_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 5.350e-8
Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:   40 ALALGAHTVRRSRTKWCAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQL 222
            A A  A   R  R   CA CGT       L +CS CH V YC SECQ+ HW+  H+HAC+L
Sbjct:  253 AFASAADLEREKRHVMCAYCGTMCCL---LTRCSTCHNVGYCSSECQIKHWKAGHKHACKL 310
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BLAST of jgi.p|Trimin1|144445 vs. uniprot
Match: A0A7C9AQT3_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AQT3_OPUST)

HSP 1 Score: 55.8 bits (133), Expect = 2.840e-7
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   88 CAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQ 219
            CAAC  +AT+     +CSRC AV YC S+CQ+ HWRQ H+H C+
Sbjct:   81 CAACFATATT-----RCSRCKAVRYCSSKCQIMHWRQGHKHECR 119
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BLAST of jgi.p|Trimin1|144445 vs. uniprot
Match: A0A5N6LRA3_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LRA3_9ASTR)

HSP 1 Score: 55.1 bits (131), Expect = 5.420e-7
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   88 CAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQLM 225
            CA+C + AT+     +CSRC  V YC  +CQ+ HWRQ H+H CQL+
Sbjct:   38 CASCFSPATT-----RCSRCKVVRYCSGKCQILHWRQVHKHECQLL 78
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BLAST of jgi.p|Trimin1|144445 vs. uniprot
Match: A0A835XPW1_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XPW1_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 5.440e-7
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:   88 CAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQLMAA 231
            C + G  + +  PLK CSRC  V YCGS CQ +HW+  H+H CQ   A
Sbjct:  826 CMSYGGRSEADLPLKHCSRCKRVRYCGSACQAAHWKAGHKHDCQAAGA 873
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BLAST of jgi.p|Trimin1|144445 vs. uniprot
Match: UPI001CB9CF70 (ubiquitin carboxyl-terminal hydrolase 15 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9CF70)

HSP 1 Score: 54.3 bits (129), Expect = 1.020e-6
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   88 CAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQLM 225
            CA C + AT+     +CSRC  V YC  +CQ+ HWRQ H+H CQL+
Sbjct:   79 CARCFSPATT-----RCSRCKTVRYCSGKCQILHWRQVHKHECQLL 119
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BLAST of jgi.p|Trimin1|144445 vs. uniprot
Match: A0A0K9RNB7_SPIOL (Uncharacterized protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RNB7_SPIOL)

HSP 1 Score: 52.8 bits (125), Expect = 3.540e-6
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   88 CAACGTSATSARPLKKCSRCHAVEYCGSECQLSHWRQAHRHACQ 219
            CA C +S TS R    CSRC AV YC S+CQ+SHWRQ+H++ C+
Sbjct:   61 CALC-SSLTSTR----CSRCKAVRYCSSKCQISHWRQSHKYECR 99
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144445 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A836CE75_9STRA1.920e-49100.00MYND-type domain-containing protein (Fragment) n=1... [more]
A0A835ZAG0_9STRA3.280e-4086.08MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835ZGG4_9STRA8.910e-2889.29MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835Z545_9STRA1.450e-948.98MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A8J9S8G0_9CHLO5.350e-847.54Probable ubiquitin carboxyl-terminal hydrolase 17 ... [more]
A0A7C9AQT3_OPUST2.840e-754.55Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
A0A5N6LRA3_9ASTR5.420e-750.00Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A835XPW1_9CHLO5.440e-747.92MYND-type domain-containing protein n=1 Tax=Edapho... [more]
UPI001CB9CF701.020e-650.00ubiquitin carboxyl-terminal hydrolase 15 n=1 Tax=E... [more]
A0A0K9RNB7_SPIOL3.540e-656.82Uncharacterized protein n=2 Tax=Spinacia oleracea ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_359contigContig_359:7396..7626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144445|gw1.359.2.1
BRITEko00000,ko00001,ko00002,ko01000,ko03036
KEGG ModuleM00403
KEGG Pathwayko04141,map04141
KEGG koko:K11699,ko:K14026
EC2.7.7.48
Preferred nameLONRF3
DescriptionERAD pathway
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0457@1|root,COG0790@1|root,KOG0548@2759|Eukaryota,KOG1550@2759|Eukaryota
Evalue1.69e-07
Seed ortholog67593.Physo138878
Hectar predicted targeting categoryother localisation
TranscriptId144767
TrackFilteredModels1
ProteinId144445
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144445gene_19088Tribonema minus UTEX_B_3156 geneContig_359 7396..7626 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_19088_1exon_19088_1Tribonema minus UTEX_B_3156 exonContig_359 7396..7626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_19088CDS_19088Tribonema minus UTEX_B_3156 CDSContig_359 7396..7626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144445Trimin1|144445|gw1.359.2.1Tribonema minus UTEX_B_3156 polypeptideContig_359 7396..7626 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_19088 ID=mRNA_19088|Name=jgi.p|Trimin1|144445|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_359:7396..7626+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGAGCATATACACCGCACCAGAGTCAACCTCAGAGGTGGCGCTGGCATT
GGGCGCGCATACAGTCAGGCGGTCCCGCACCAAGTGGTGCGCAGCATGCG
GCACTTCTGCCACCTCAGCACGCCCCTTGAAGAAGTGCAGCCGTTGCCAT
GCTGTTGAGTACTGCGGCAGCGAATGCCAGCTATCGCATTGGAGGCAGGC
CCACAGACATGCCTGCCAGCTGATGGCTGCA
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protein sequence of jgi.p|Trimin1|144445

>Trimin1|144445|gw1.359.2.1 ID=Trimin1|144445|gw1.359.2.1|Name=jgi.p|Trimin1|144445|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=77bp
KSIYTAPESTSEVALALGAHTVRRSRTKWCAACGTSATSARPLKKCSRCH
AVEYCGSECQLSHWRQAHRHACQLMAA
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mRNA from alignment at Contig_359:7396..7626+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_19088 ID=mRNA_19088|Name=jgi.p|Trimin1|144445|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_359:7396..7626+ (Tribonema minus UTEX_B_3156 )
AAGAGCATATACACCGCACCAGAGTCAACCTCAGAGGTGGCGCTGGCATT
GGGCGCGCATACAGTCAGGCGGTCCCGCACCAAGTGGTGCGCAGCATGCG
GCACTTCTGCCACCTCAGCACGCCCCTTGAAGAAGTGCAGCCGTTGCCAT
GCTGTTGAGTACTGCGGCAGCGAATGCCAGCTATCGCATTGGAGGCAGGC
CCACAGACATGCCTGCCAGCTGATGGCTGCA
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Coding sequence (CDS) from alignment at Contig_359:7396..7626+

>mRNA_19088 ID=mRNA_19088|Name=jgi.p|Trimin1|144445|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=231bp|location=Sequence derived from alignment at Contig_359:7396..7626+ (Tribonema minus UTEX_B_3156 )
AAGAGCATATACACCGCACCAGAGTCAACCTCAGAGGTGGCGCTGGCATT
GGGCGCGCATACAGTCAGGCGGTCCCGCACCAAGTGGTGCGCAGCATGCG
GCACTTCTGCCACCTCAGCACGCCCCTTGAAGAAGTGCAGCCGTTGCCAT
GCTGTTGAGTACTGCGGCAGCGAATGCCAGCTATCGCATTGGAGGCAGGC
CCACAGACATGCCTGCCAGCTGATGGCTGCA
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