mRNA_18982 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146441
Unique NamemRNA_18982
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|146441 vs. uniprot
Match: A0A836CDE9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE9_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.310e-52
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 
Query:    1 QVMHHECEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHXXXXXXXXXXXXXXXXXXXXXXXXXXXRASALTSRTGSGAATLGRASDXXXXXXXXXXXVGMCFKHGGGDRCQHIDNGHISCKASVQS 375
            QVMHHECEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHXXXXXXXXXXXXXXXXXXXXXXXXXXXRASALTSRTGSGAATLGRASDXXXXXXXXXXXVGMCFKHGGGDRCQHIDNGHISCKASVQS
Sbjct:    1 QVMHHECEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHXXXXXXXXXXXXXXXXXXXXXXXXXXXRASALTSRTGSGAATLGRASDXXXXXXXXXXXVGMCFKHGGGDRCQHIDNGHISCKASVQS 125
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BLAST of jgi.p|Trimin1|146441 vs. uniprot
Match: A0A836CIX9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:   19 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH 111
            CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH
Sbjct:    1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH 31
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BLAST of jgi.p|Trimin1|146441 vs. uniprot
Match: A0A836CC28_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC28_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.740e-11
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   19 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH 111
            CEVNGCTKQAV RSGSTEFCVMH GGDRCQH
Sbjct:    1 CEVNGCTKQAVRRSGSTEFCVMHEGGDRCQH 31
[Close]
BLAST of jgi.p|Trimin1|146441 vs. uniprot
Match: A0A836CB44_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB44_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 8.030e-5
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:   19 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH 111
            C ++ CTKQAV    +TEFCV HGGGDRCQ+
Sbjct:    6 CSIDDCTKQAVKGGDATEFCVKHGGGDRCQY 36
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146441 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CDE9_9STRA1.310e-52100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CIX9_9STRA1.280e-13100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CC28_9STRA8.740e-1193.55Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CB44_9STRA8.030e-564.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_492contigContig_492:5957..6547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146441|gw1.492.1.1
Hectar predicted targeting categoryother localisation
TranscriptId146763
TrackFilteredModels1
ProteinId146441
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146441gene_18982Tribonema minus UTEX_B_3156 geneContig_492 5957..6547 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18982_1exon_18982_1Tribonema minus UTEX_B_3156 exonContig_492 5957..6067 +
exon_18982_2exon_18982_2Tribonema minus UTEX_B_3156 exonContig_492 6118..6237 +
exon_18982_3exon_18982_3Tribonema minus UTEX_B_3156 exonContig_492 6293..6547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18982CDS_18982Tribonema minus UTEX_B_3156 CDSContig_492 5957..6067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146441Trimin1|146441|gw1.492.1.1Tribonema minus UTEX_B_3156 polypeptideContig_492 5957..6547 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18982 ID=mRNA_18982|Name=jgi.p|Trimin1|146441|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=486bp|location=Sequence derived from alignment at Contig_492:5957..6547+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAAGTCATGCATCATGAATGCGAAGTCAACGGATGCACCAAGCAGGCCGT
GCTTCGCAGCGGCAGCACTGAGTTCTGTGTCATGCACGGCGGCGGCGATC
GCTGCCAGCACCGGAACGGTGTGGTTCATATGTGCATCAAGCATGGCGGT
GGCAACCGCTGCCAGCATGTAGACGAAGAAGGTCATTCTTGCAGGGCATC
TGCTTTAACCAGCAGGACCGGATCCGGTGCCGCAACTCTTGGCAGGGCAT
CAGATTCTGCTGTGACCAGCAAGAGCGGATCAGGTGCCGTTGGTATGTGC
TTCAAGCATGGCGGCGGCGATCGCTGCCAGCACATTGACAATGGACACAT
TTCTTGCAAAGCATCCGTGCAGAGTAGCAAGAGCGGATCCGGTACCGCTG
GTATGTGCATCAAGCATGGTGGCAGCGATGGCTGCCACCATACTGACGAG
GGAGGCAACTCTTGCACGTCATCTGCTGTTGCCAGT
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protein sequence of jgi.p|Trimin1|146441

>Trimin1|146441|gw1.492.1.1 ID=Trimin1|146441|gw1.492.1.1|Name=jgi.p|Trimin1|146441|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=162bp
QVMHHECEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHRNGVVHMCIKHGG
GNRCQHVDEEGHSCRASALTSRTGSGAATLGRASDSAVTSKSGSGAVGMC
FKHGGGDRCQHIDNGHISCKASVQSSKSGSGTAGMCIKHGGSDGCHHTDE
GGNSCTSSAVAS
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mRNA from alignment at Contig_492:5957..6547+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18982 ID=mRNA_18982|Name=jgi.p|Trimin1|146441|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=591bp|location=Sequence derived from alignment at Contig_492:5957..6547+ (Tribonema minus UTEX_B_3156 )
CAAGTCATGCATCATGAATGCGAAGTCAACGGATGCACCAAGCAGGCCGT
GCTTCGCAGCGGCAGCACTGAGTTCTGTGTCATGCACGGCGGCGGCGATC
GCTGCCAGCACGTCGACGAAGGAGGCAACTCTTGCAATGCATGTGCCAAA
ATCAGTAAAAGCGGAACGGTGTGGTTCATATGTGCATCAAGCATGGCGGT
GGCAACCGCTGCCAGCATGTAGACGAAGAAGGTCATTCTTGCAGGGCATC
TGCTTTAACCAGCAGGACCGGATCCGGTGCCGTTGTATGTGCATCAAGCA
TGGCGGTGGTGATCGCTGCCAGCACGTCAGAAGGAGGCAACTCTTGGCAG
GGCATCAGATTCTGCTGTGACCAGCAAGAGCGGATCAGGTGCCGTTGGTA
TGTGCTTCAAGCATGGCGGCGGCGATCGCTGCCAGCACATTGACAATGGA
CACATTTCTTGCAAAGCATCCGTGCAGAGTAGCAAGAGCGGATCCGGTAC
CGCTGGTATGTGCATCAAGCATGGTGGCAGCGATGGCTGCCACCATACTG
ACGAGGGAGGCAACTCTTGCACGTCATCTGCTGTTGCCAGT
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Coding sequence (CDS) from alignment at Contig_492:5957..6547+

>mRNA_18982 ID=mRNA_18982|Name=jgi.p|Trimin1|146441|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=486bp|location=Sequence derived from alignment at Contig_492:5957..6547+ (Tribonema minus UTEX_B_3156 )
CAAGTCATGCATCATGAATGCGAAGTCAACGGATGCACCAAGCAGGCCGT
GCTTCGCAGCGGCAGCACTGAGTTCTGTGTCATGCACGGCGGCGGCGATC
GCTGCCAGCACCGGAACGGTGTGGTTCATATGTGCATCAAGCATGGCGGT
GGCAACCGCTGCCAGCATGTAGACGAAGAAGGTCATTCTTGCAGGGCATC
TGCTTTAACCAGCAGGACCGGATCCGGTGCCGCAACTCTTGGCAGGGCAT
CAGATTCTGCTGTGACCAGCAAGAGCGGATCAGGTGCCGTTGGTATGTGC
TTCAAGCATGGCGGCGGCGATCGCTGCCAGCACATTGACAATGGACACAT
TTCTTGCAAAGCATCCGTGCAGAGTAGCAAGAGCGGATCCGGTACCGCTG
GTATGTGCATCAAGCATGGTGGCAGCGATGGCTGCCACCATACTGACGAG
GGAGGCAACTCTTGCACGTCATCTGCTGTTGCCAGT
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