mRNA_1891 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163470
Unique NamemRNA_1891
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163470 vs. uniprot
Match: A0A835Z9M8_9STRA (Ankyrin repeat-containing domain protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M8_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.210e-61
Identity = 346/441 (78.46%), Postives = 349/441 (79.14%), Query Frame = 1 
Query:    1 DERVCHALARSGALEQLKFVKANVSDLLWSHKLTDVAAEHGYLATLQWLHETGVPLRTSASHVAAESGHVHVLTWLVAKRVYDSKIYIHAAAGXXXXXXXXX---------------------------------VERSF----------------------------PTDWLTCEAAARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAVNATDFMRLMRLSEGVVFISDKMIEAARNTCRPSTIPFLEEWKRRWSHLLPPPDAALAPEEETASLHQLQMN 1140
            DERVCHALARSGALEQLKFVKANVSDLLWSHKLTDVAAEHG+LATLQWLHETGVPLRTSASH             LVAKRVYDS+IYIHAAAG                                          +E  F                            PTDWLTCEA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IAVNATDFMRLMRLSEGVVFISDKMIEAARNTCRPSTIPFLEEWKRRWSHLLPPPD ALAPEEETASL QLQMN
Sbjct:   10 DERVCHALARSGALEQLKFVKANVSDLLWSHKLTDVAAEHGHLATLQWLHETGVPLRTSASHXXXXXXXXXXXXXLVAKRVYDSEIYIHAAAGGNVKILAWLRDHPDKRLWRLRLSSTAITKAAEKGHRDAVRWLIEHRFKTSDDSXXXXXXXXXXXXXXXXXXXXXXPTDWLTCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIAVNATDFMRLMRLSEGVVFISDKMIEAARNTCRPSTIPFLEEWKRRWSHLLPPPDVALAPEEETASLDQLQMN 450
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163470 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z9M8_9STRA1.210e-6178.46Ankyrin repeat-containing domain protein n=2 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:419553..421019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163470|e_gw1.26.80.1
Hectar predicted targeting categoryother localisation
TranscriptId163792
TrackFilteredModels1
ProteinId163470
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163470gene_1891Tribonema minus UTEX_B_3156 geneContig_26 419553..421019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163470Trimin1|163470|e_gw1.26.80.1Tribonema minus UTEX_B_3156 polypeptideContig_26 419553..421019 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1891_2exon_1891_2Tribonema minus UTEX_B_3156 exonContig_26 419553..420396 -
exon_1891_1exon_1891_1Tribonema minus UTEX_B_3156 exonContig_26 420721..421019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1891CDS_1891Tribonema minus UTEX_B_3156 CDSContig_26 420721..421019 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1891 ID=mRNA_1891|Name=jgi.p|Trimin1|163470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1143bp|location=Sequence derived from alignment at Contig_26:419553..421019- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATGAGCGGGTCTGCCATGCGCTCGCTAGGAGCGGGGCCCTGGAGCAGTT
AAAGTTTGTCAAGGCCAACGTCAGCGACCTGCTCTGGAGCCATAAGCTTA
CAGATGTAGCGGCCGAGCACGGGTACCTCGCAACCCTACAATGGTTGCAC
GAGACAGGCGTGCCGCTGAGGACTAGCGCGAGTCACGTTGCTGCTGAAAG
CGGTCACGTGCATGTTCTCACCTGGCTAGTTGCTAAAAGGGTGTACGACA
GTAAAATCTACATACACGCTGCAGCTGGCGGGAACGTCAAGATCCTCGCG
TGGCTGGTCGAACGCAGCTTTCCCACAGACTGGCTGACCTGCGAGGCAGC
TGCGAGGAATGGCGACCTCGACCTCATTCAGTGGCTCAGAGAGCATGGAG
CGGAACTGGACGAAGGAGTCTGCACGGGTGCGGCTTCAGGAGGACACCTC
CATGTTCTCAAGTTTGCCAGGGAGAACGGATGCAGCTGGCGCGGCAGTGC
TTGCGAAGGAGCAGCGGCGGGGGGGCACCTGCAGGTCTTACAGTGGATCC
ATGCGAATGGAGGGCCATGGGACGCGCGGACGTTTACTGCAGCGGCGCAG
CGCGGTGATGTAGGGATGATGCAGTATCTGTTGCAGCAGGACTGCAAATG
GTCCGTCAAGACCTGTGCAGCAGCGGCCGGAGGAGGGCATTTGCATGCGC
TGCAGTGGCTGCGGGAGCGGGGGTGTCCGTGGGATGCGCGCACCGTCACG
GCCGCTGCTGCGAGTGGTCACCTAGAGATCATCAGGTGGGCCCGCAACAT
GGGGTGTAGGTGGGGCACAGCATCCATTTCGGCGGCTGTCAGAAACGAAC
ATGAGCAAGTCGCGACGTGGATGCTGCAAAACGGGTGCACTTTCGATGAA
GCTACAGTCAGTGCAGCGATAGCAGTCAATGCTACAGATTTCATGCGTCT
GATGCGGTTGTCTGAGGGGGTAGTGTTCATATCAGATAAGATGATTGAGG
CAGCAAGGAACACCTGCCGGCCGAGCACAATTCCATTTCTGGAGGAATGG
AAGAGAAGATGGTCGCACCTGCTGCCGCCCCCAGATGCGGCACTGGCACC
TGAGGAAGAGACCGCTAGCCTACACCAGCTTCAAATGAACTGA
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protein sequence of jgi.p|Trimin1|163470

>Trimin1|163470|e_gw1.26.80.1 ID=Trimin1|163470|e_gw1.26.80.1|Name=jgi.p|Trimin1|163470|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=381bp
DERVCHALARSGALEQLKFVKANVSDLLWSHKLTDVAAEHGYLATLQWLH
ETGVPLRTSASHVAAESGHVHVLTWLVAKRVYDSKIYIHAAAGGNVKILA
WLVERSFPTDWLTCEAAARNGDLDLIQWLREHGAELDEGVCTGAASGGHL
HVLKFARENGCSWRGSACEGAAAGGHLQVLQWIHANGGPWDARTFTAAAQ
RGDVGMMQYLLQQDCKWSVKTCAAAAGGGHLHALQWLRERGCPWDARTVT
AAAASGHLEIIRWARNMGCRWGTASISAAVRNEHEQVATWMLQNGCTFDE
ATVSAAIAVNATDFMRLMRLSEGVVFISDKMIEAARNTCRPSTIPFLEEW
KRRWSHLLPPPDAALAPEEETASLHQLQMN*
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mRNA from alignment at Contig_26:419553..421019-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1891 ID=mRNA_1891|Name=jgi.p|Trimin1|163470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1467bp|location=Sequence derived from alignment at Contig_26:419553..421019- (Tribonema minus UTEX_B_3156 )
GATGAGCGGGTCTGCCATGCGCTCGCTAGGAGCGGGGCCCTGGAGCAGTT
AAAGTTTGTCAAGGCCAACGTCAGCGACCTGCTCTGGAGCCATAAGCTTA
CAGATGTAGCGGCCGAGCACGGGTACCTCGCAACCCTACAATGGTTGCAC
GAGACAGGCGTGCCGCTGAGGACTAGCGCGAGTCACGTTGCTGCTGAAAG
CGGTCACGTGCATGTTCTCACCTGGCTAGTTGCTAAAAGGGTGTACGACA
GTAAAATCTACATACACGCTGCAGCTGGCGGGAACGTCAAGATCCTCGCG
TGGCTACGTGACCATCCGGACAAGAGGCTGTGGAGGTTACGGCTCAGCTC
GACTGCTATCACCAAGGCAGCGGAGAAGGGGCATCGGAATGCTGTGAGGT
GGCTGATCGAGCATCGCTTCAAAACCAGTGACGACAGTATAGTGGTCGCT
GCTCGAGCAGGGTCCAAAGAGTGTGTCGAGCTCATATACGCGCACAGAAC
TGCTGACTTGCGACAGCGTTGGCTGCGTGCTAGCCACCCGGAGGGAGCGA
TCGAGCCATTGTTCGGCCCCTGCGAAGGCGCAGTCACTGCAGCTGCGGAG
GCTGGCAACGCTGATCTCGTCAGGTGGCTGGTCGAACGCAGCTTTCCCAC
AGACTGGCTGACCTGCGAGGCAGCTGCGAGGAATGGCGACCTCGACCTCA
TTCAGTGGCTCAGAGAGCATGGAGCGGAACTGGACGAAGGAGTCTGCACG
GGTGCGGCTTCAGGAGGACACCTCCATGTTCTCAAGTTTGCCAGGGAGAA
CGGATGCAGCTGGCGCGGCAGTGCTTGCGAAGGAGCAGCGGCGGGGGGGC
ACCTGCAGGTCTTACAGTGGATCCATGCGAATGGAGGGCCATGGGACGCG
CGGACGTTTACTGCAGCGGCGCAGCGCGGTGATGTAGGGATGATGCAGTA
TCTGTTGCAGCAGGACTGCAAATGGTCCGTCAAGACCTGTGCAGCAGCGG
CCGGAGGAGGGCATTTGCATGCGCTGCAGTGGCTGCGGGAGCGGGGGTGT
CCGTGGGATGCGCGCACCGTCACGGCCGCTGCTGCGAGTGGTCACCTAGA
GATCATCAGGTGGGCCCGCAACATGGGGTGTAGGTGGGGCACAGCATCCA
TTTCGGCGGCTGTCAGAAACGAACATGAGCAAGTCGCGACGTGGATGCTG
CAAAACGGGTGCACTTTCGATGAAGCTACAGTCAGTGCAGCGATAGCAGT
CAATGCTACAGATTTCATGCGTCTGATGCGGTTGTCTGAGGGGGTAGTGT
TCATATCAGATAAGATGATTGAGGCAGCAAGGAACACCTGCCGGCCGAGC
ACAATTCCATTTCTGGAGGAATGGAAGAGAAGATGGTCGCACCTGCTGCC
GCCCCCAGATGCGGCACTGGCACCTGAGGAAGAGACCGCTAGCCTACACC
AGCTTCAAATGAACTGA
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Coding sequence (CDS) from alignment at Contig_26:419553..421019-

>mRNA_1891 ID=mRNA_1891|Name=jgi.p|Trimin1|163470|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1143bp|location=Sequence derived from alignment at Contig_26:419553..421019- (Tribonema minus UTEX_B_3156 )
GATGAGCGGGTCTGCCATGCGCTCGCTAGGAGCGGGGCCCTGGAGCAGTT
AAAGTTTGTCAAGGCCAACGTCAGCGACCTGCTCTGGAGCCATAAGCTTA
CAGATGTAGCGGCCGAGCACGGGTACCTCGCAACCCTACAATGGTTGCAC
GAGACAGGCGTGCCGCTGAGGACTAGCGCGAGTCACGTTGCTGCTGAAAG
CGGTCACGTGCATGTTCTCACCTGGCTAGTTGCTAAAAGGGTGTACGACA
GTAAAATCTACATACACGCTGCAGCTGGCGGGAACGTCAAGATCCTCGCG
TGGCTGGTCGAACGCAGCTTTCCCACAGACTGGCTGACCTGCGAGGCAGC
TGCGAGGAATGGCGACCTCGACCTCATTCAGTGGCTCAGAGAGCATGGAG
CGGAACTGGACGAAGGAGTCTGCACGGGTGCGGCTTCAGGAGGACACCTC
CATGTTCTCAAGTTTGCCAGGGAGAACGGATGCAGCTGGCGCGGCAGTGC
TTGCGAAGGAGCAGCGGCGGGGGGGCACCTGCAGGTCTTACAGTGGATCC
ATGCGAATGGAGGGCCATGGGACGCGCGGACGTTTACTGCAGCGGCGCAG
CGCGGTGATGTAGGGATGATGCAGTATCTGTTGCAGCAGGACTGCAAATG
GTCCGTCAAGACCTGTGCAGCAGCGGCCGGAGGAGGGCATTTGCATGCGC
TGCAGTGGCTGCGGGAGCGGGGGTGTCCGTGGGATGCGCGCACCGTCACG
GCCGCTGCTGCGAGTGGTCACCTAGAGATCATCAGGTGGGCCCGCAACAT
GGGGTGTAGGTGGGGCACAGCATCCATTTCGGCGGCTGTCAGAAACGAAC
ATGAGCAAGTCGCGACGTGGATGCTGCAAAACGGGTGCACTTTCGATGAA
GCTACAGTCAGTGCAGCGATAGCAGTCAATGCTACAGATTTCATGCGTCT
GATGCGGTTGTCTGAGGGGGTAGTGTTCATATCAGATAAGATGATTGAGG
CAGCAAGGAACACCTGCCGGCCGAGCACAATTCCATTTCTGGAGGAATGG
AAGAGAAGATGGTCGCACCTGCTGCCGCCCCCAGATGCGGCACTGGCACC
TGAGGAAGAGACCGCTAGCCTACACCAGCTTCAAATGAACTGA
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