mRNA_1887 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163496
Unique NamemRNA_1887
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|163496 vs. uniprot
Match: A0A835Z5L3_9STRA (NTP_transf_2 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5L3_9STRA)

HSP 1 Score: 1417 bits (3668), Expect = 0.000e+0
Identity = 738/765 (96.47%), Postives = 748/765 (97.78%), Query Frame = 1 
Query:    1 MDAAVDLTTYVHPREAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSKPVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCASTVEYGELPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAA-SSSEEWTAHDGARIEALRLMLDSPLGVYTTARMQAPAPGALTVHSVMTEITTLNQHAMRGSKVASKMLIARMMWVDGDLALRNGRADEAVELYAASLRASVADGDPFCGWWRADSKYVECADSVLTRNPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWVEALQDASRCAALCPDEPIFHYWVAVGRRNTARPEAAAAGAAQTLSALQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGDAKFERARNAVRKAQAAEAVTLPVFPATECEAKDTVLKTMAAFGWLPGDGERIKDLLKRLYLGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELLSNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARATRAHLGRKDGAAALASARRAAALL 2292
            MDAAVDLTTYVHP EAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETS PVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVC++TVE+G LPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAA SSSEEWTAHDGARIE+LRLMLDSPLGVYTTARMQAPAPGALTVHSVMTEIT L QHAMRGSKVASKMLIARMMWVDGDLALR+GRAD+AVELYA SLRASVADGDPFCGWWRADSKY ECADSVL R+PNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRW EALQDASRCAALCPDEPIFHYWVAVGRRNT RPE AAAGAAQTLSALQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGDAKFERAR+AVR+AQAAE VTLPVFPATECEAKDTVLKTMAAFG LPGDG+  KDLLKRLYLGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELLSNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARA RAHLGRKDGAAALASARRAAALL
Sbjct:    1 MDAAVDLTTYVHPHEAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSTPVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCSNTVEFGLLPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAAASSSEEWTAHDGARIESLRLMLDSPLGVYTTARMQAPAPGALTVHSVMTEITILKQHAMRGSKVASKMLIARMMWVDGDLALRDGRADDAVELYAGSLRASVADGDPFCGWWRADSKYAECADSVLARHPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWAEALQDASRCAALCPDEPIFHYWVAVGRRNTVRPETAAAGAAQTLSALQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGDAKFERARHAVREAQAAEVVTLPVFPATECEAKDTVLKTMAAFGLLPGDGKLNKDLLKRLYLGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELLSNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARAARAHLGRKDGAAALASARRAAALL 765
[Close]
BLAST of jgi.p|Trimin1|163496 vs. uniprot
Match: A0A836CEC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEC5_9STRA)

HSP 1 Score: 802 bits (2072), Expect = 9.590e-258
Identity = 432/523 (82.60%), Postives = 439/523 (83.94%), Query Frame = 1 
Query:    1 MDAAVDLTTYVHPREAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSKPVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCASTVEYGELPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAASSSEEWTAHDGARIEALRLMLDSPLGVYTTARMQAPAPGALTVHSVMTEITTLNQHAMRGSKVASKMLIARMMWVDGDLALRNGRADEAVELYAASLRASVADGDPFCGWWRADSKYVECADSVLTRNPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWVEALQDASR 1569
            MDAAVDLTTYVHP EAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSKPV+LQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCA+TVEYGELP ADASVGA AALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQ                                                                      APLVHTHA VAPGWLFMAPAQQRATDAFFADFGGAATAKD AASRTAASSSEEWTAHDG RIE+LRLMLDSPLGVYTTA MQAPAPGALTV +VMTEITTLNQHAMRGSKVAS ML+ARMMWVDGDLALR+GRADEAVELYAASLRASVADGDPFCGWWRADSKY ECADSVL R+PN VDAHMLHAWSFMRS R KDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWVEALQDASR
Sbjct:  306 MDAAVDLTTYVHPYEAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSKPVTLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCANTVEYGELPAADASVGAHAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQ----------------------------------------------------------------------APLVHTHAEVAPGWLFMAPAQQRATDAFFADFGGAATAKDRAASRTAASSSEEWTAHDGTRIESLRLMLDSPLGVYTTAHMQAPAPGALTVDTVMTEITTLNQHAMRGSKVASNMLLARMMWVDGDLALRDGRADEAVELYAASLRASVADGDPFCGWWRADSKYAECADSVLARHPNGVDAHMLHAWSFMRSDRCKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWVEALQDASR 758
[Close]
BLAST of jgi.p|Trimin1|163496 vs. uniprot
Match: A0A7S0SBB4_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SBB4_9CHLO)

HSP 1 Score: 516 bits (1330), Expect = 7.820e-164
Identity = 348/788 (44.16%), Postives = 447/788 (56.73%), Query Frame = 1 
Query:   10 AVDLTTYVHPREAHAFKDAVTLAQQTG---DFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSKPVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCASTVEYGELPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAASSSEEWTAHDGARIEALRLMLDSPLGVYTTARMQAPAPGALTV---HSVMTEITTLNQHAMRGSKVASKMLIARMMWVDGDLALRNGRA------DEAVELYAASLRASVADGDPFCGWWRADS---KYVECADSVLTRNPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWVEALQDASRCAALCPDEPIFHYWVAVGRRN-------TARPEAAAAGAAQTLSALQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGDAKFERARNAVRKAQAAEAVTLPVFPATECEAKDTVLKTMAAFGWLPGDG----ERIKDLLKRLYLGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELL-SNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARATRAHLGRKDGAAALASARRAAALL 2292
            +V L TYV  REAHAF   V    +     D       L+  V+ V  AA    G D  V  AGSV K T V  SD+DLYV+++ P +L+Q QALEA L+ HP  N AHV+ K  AIH  L G+D DVVCA TVE+G  PP +  V  D A+  A +ALK+WA  A  G RK+PG  +E+LA HC+   GS+ S S   GDG MQL VAVLQ IADGG     LR AT L    R +L A AQA LHVFAVSR LL G     G FRTAAEV  WL G     PL  T AG+ PGWL   PAQQR  D  F          D       A + E+ +  DG    +L LMLD+PLG Y   R+ +P     T+    ++ +++  L     +GS VA +ML +RM+W+ G+ ALR G A      + A   +A+S+R++V+DGDPF G+ ++DS   +Y  CA SVL+R+   VDA +L AW+  R GR  D+E+VL   I  HA  D  G + +R  L GNQ RW E L+ +  C  LCP+EP+FHYW+A  R+N       T   EA  A     +S+ +RF+A A PEGRKV  A Y++A+ +++         D  F      VRKAQAAEA  L +F    CEA+  +L+ +        DG    ER +++L  L     +   AL   GN AF   D+  A+  YTKAL+LAP   ELL  NRAA R++LRWFTAAAADA AA + RP WAK H R  +AH+GR+DGA+A A+A  AA LL
Sbjct:   90 SVRLATYVRVREAHAFARVVESESKLNPILDLV-----LDKIVSTVRDAAALVFGPDVHVAPAGSVKKNTQVGSSDLDLYVQSAAPATLEQVQALEALLKAHPGVNPAHVKHKKLAIHAHLFGVDCDVVCAETVEHGARPPVNERVAQDPAVAGAARALKLWAEQAAHGTRKIPGHALESLALHCQ---GSAPSISVTMGDGAMQLCVAVLQGIADGGGDADVLREATRLHKWTRESLAALAQATLHVFAVSRALLPG-----GCFRTAAEVRVWLIGSGHLWPLQKTLAGLVPGWLLCTPAQQRTADPRFCILAQGEGLVD-------AGTEEDSSQLDGIGNRSLALMLDTPLGAYV--RLTSPTSEQRTIVQNKTISSDLAQLQDLLEKGSSVAVRMLQSRMLWLTGEAALR-GEAISIDDCERAAGCFASSMRSAVSDGDPFSGYPQSDSSDERYATCAASVLSRDACHVDAMLLQAWALRRLGRLPDAEKVLNTLIAHHASSDARGALAMRANLRGNQSRWREFLEGSEYCVQLCPEEPMFHYWLATARKNLLDKTMNTTTTEATLA-----ISSYRRFLAGAAPEGRKVCQALYEVALLQMIIASKALPPTDV-FAACIPTVRKAQAAEANRLSIFAGETCEAQSMMLEMLRMHEARGADGFVPEERFEEVLCDLPTDETERAEALRMRGNKAFASCDFSMADELYTKALQLAPGRAELLLGNRAAARIKLRWFTAAAADAMAALVARPGWAKAHYRIAQAHMGRRDGASAAAAASTAAVLL 848
[Close]
BLAST of jgi.p|Trimin1|163496 vs. uniprot
Match: A0A836CAU1_9STRA (NTP_transf_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU1_9STRA)

HSP 1 Score: 404 bits (1039), Expect = 9.160e-128
Identity = 224/290 (77.24%), Postives = 245/290 (84.48%), Query Frame = 1 
Query:   88 GDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSKPV--SLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCASTVEYGELPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGA 951
            GDF RG G LESA+A+VSSAARAA+G DARV +AGSV KGTTV GSDVDL +ETSKPV  SL+QR+ALEARLRQHP TNAAHVQLK KAIHM+LLGMDIDVVCA TVEYG LPPAD+ VGAD ALQLAV+ALKIWA+CATGGARKVP R MEALA HCRDAR SS SS+   G+GGMQLFVAVLQ +ADGGTQQ +LRAAT  D+A R ALRARAQA LH+FAVSRVLLSGS   DGGFRTAAEVHAW+SGYSGQ  LV T AG  P WL M  A+QRA+DA FA+FGGA
Sbjct:    2 GDFVRGNGMLESAIALVSSAARAAVGEDARVVLAGSVGKGTTVRGSDVDLLIETSKPVRQSLEQRRALEARLRQHPSTNAAHVQLKQKAIHMELLGMDIDVVCAHTVEYGVLPPADSRVGADTALQLAVRALKIWAQCATGGARKVPERAMEALAMHCRDARASSSSSALPLGEGGMQLFVAVLQALADGGTQQAELRAATKFDAAARNALRARAQASLHMFAVSRVLLSGS---DGGFRTAAEVHAWISGYSGQGTLVETLAGWVPSWLIMTLAEQRASDALFAEFGGA 288
[Close]
BLAST of jgi.p|Trimin1|163496 vs. uniprot
Match: A0A061S0W4_9CHLO (Tetratricopeptide repeat protein 1-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S0W4_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 5.060e-7
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1 
Query: 1978 LGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELLSNRAATRLELRWFTAAAADATAAAMLRPDWAKPHAR 2217
            +GC D V  L + GN  +K++++ KA A Y++A++  P++  L SNRA   L+L+  T A  DA     L+PDW K + R
Sbjct:    1 MGCEDVVQVLKEQGNTEYKKQNFLKAAALYSRAIKEDPNNAVLFSNRAEALLQLKKVTKALQDAEECIKLKPDWEKGYFR 80
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163496 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z5L3_9STRA0.000e+096.47NTP_transf_2 domain-containing protein n=2 Tax=Tri... [more]
A0A836CEC5_9STRA9.590e-25882.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0SBB4_9CHLO7.820e-16444.16Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A836CAU1_9STRA9.160e-12877.24NTP_transf_2 domain-containing protein n=1 Tax=Tri... [more]
A0A061S0W4_9CHLO5.060e-738.75Tetratricopeptide repeat protein 1-like n=1 Tax=Te... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:406583..409071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163496|e_gw1.26.155.1
Descriptionankyrin repeat
COG categoryO
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0457@1|root,COG0666@1|root,KOG0504@2759|Eukaryota,KOG0548@2759|Eukaryota,37HF2@33090|Viridiplantae,3G8J9@35493|Streptophyta
Evalue4.01e-06
Seed ortholog218851.Aquca_049_00060.1
Hectar predicted targeting categoryother localisation
TranscriptId163818
TrackFilteredModels1
ProteinId163496
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163496gene_1887Tribonema minus UTEX_B_3156 geneContig_26 406583..409071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163496Trimin1|163496|e_gw1.26.155.1Tribonema minus UTEX_B_3156 polypeptideContig_26 406583..409071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1887_2exon_1887_2Tribonema minus UTEX_B_3156 exonContig_26 406583..406922 -
exon_1887_1exon_1887_1Tribonema minus UTEX_B_3156 exonContig_26 407120..409071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1887CDS_1887Tribonema minus UTEX_B_3156 CDSContig_26 407120..409071 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1887 ID=mRNA_1887|Name=jgi.p|Trimin1|163496|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2292bp|location=Sequence derived from alignment at Contig_26:406583..409071- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTGCGGTCGACTTGACCACCTACGTGCACCCCCGCGAGGCTCA
CGCCTTCAAGGATGCAGTGACTTTAGCTCAGCAGACTGGCGACTTCACGC
GTGGCGGCGGCAACCTGGAGTCGGCCGTGGCTATTGTGAGCAGTGCGGCG
CGCGCTGCTCTGGGTGCGGATGCTCGTGTCACCGTGGCCGGCAGCGTCGC
CAAGGGGACTACGGTCATGGGCAGCGACGTTGACCTATACGTCGAGACAT
CAAAACCAGTGTCGCTTCAGCAACGCCAAGCACTGGAGGCGCGCCTGAGA
CAGCACCCTCTCACCAACGCTGCGCACGTACAGCTCAAGCTCAAAGCTAT
TCACATGCAGCTGCTGGGGATGGACATTGACGTGGTCTGCGCCAGCACTG
TGGAGTACGGCGAACTGCCCCCAGCAGACGCAAGCGTTGGAGCAGATGCG
GCACTGCAGCTGGCGGTGCAAGCGCTGAAGATCTGGGCGCGATGTGCCAC
CGGAGGAGCACGCAAAGTCCCGGGACGCATGATGGAGGCGCTTGCTAAGC
ACTGCAGGGATGCTCGCGGCTCGTCTATCAGCTCGAGTTCACAGCAGGGG
GATGGCGGCATGCAACTCTTTGTTGCCGTACTGCAGGTCATTGCAGACGG
CGGCACCCAGCAGCCTCAGCTTCGCGCAGCTACAACGCTTGACTCTGCCG
GACGTACCGCTCTTCGTGCGCGCGCGCAAGCTGTGCTACACGTCTTTGCG
GTGTCGCGTGTCTTACTCTCGGGCAGCGAGGACAGCGACGGGGGGTTTCG
GACTGCTGCGGAGGTGCACGCGTGGCTCTCGGGGTACTCAGGGCAGGCGC
CGCTTGTACACACCCACGCCGGAGTTGCCCCAGGGTGGCTCTTCATGGCG
CCAGCTCAGCAGCGCGCCACAGACGCCTTCTTTGCCGATTTCGGGGGCGC
AGCAACGGCAAAGGACACGGCAGCTAGCAGAACGGCGGCCAGCAGCTCTG
AGGAGTGGACAGCTCATGACGGTGCGCGCATCGAGGCTCTGCGCTTGATG
CTAGACAGCCCCCTCGGTGTATACACAACCGCACGGATGCAAGCCCCAGC
GCCAGGTGCGCTTACGGTCCATAGCGTCATGACAGAAATCACCACCCTCA
ATCAGCATGCCATGCGGGGGTCCAAAGTAGCCAGCAAGATGCTGATCGCG
CGCATGATGTGGGTTGATGGCGACCTAGCGTTACGCAACGGGCGCGCAGA
TGAGGCTGTTGAGCTCTATGCGGCATCGCTGCGTGCGTCCGTGGCAGACG
GCGACCCATTCTGCGGGTGGTGGCGTGCGGACAGCAAGTATGTAGAGTGC
GCTGATTCCGTCCTCACCCGCAACCCTAACAGCGTCGACGCCCACATGCT
GCACGCATGGTCATTTATGCGCAGCGGTCGCTACAAAGACTCAGAGCGGG
TCTTGACGGCCACGATAGAGCGCCACGCACCCGATGATACACATGGTGTC
ATTCACCTGCGCATGTGTCTATACGGTAACCAGGGGCGTTGGGTGGAAGC
CCTGCAGGACGCGTCGCGGTGTGCGGCCCTATGCCCGGACGAGCCCATAT
TTCACTACTGGGTGGCGGTGGGGCGCCGCAACACCGCGCGGCCCGAGGCA
GCAGCTGCTGGCGCTGCGCAAACGCTGTCAGCACTTCAGCGTTTCGTAGC
GCACGCGCCCCCGGAGGGTCGCAAGGTGCCCATGGCGTGGTACGACATCG
CCATGCAGGAGGTGCTCGCCGGCCGCGGCGACGCACGCAGGGGCGATGCG
AAGTTCGAGCGCGCCAGAAACGCGGTTCGCAAGGCGCAAGCAGCTGAGGC
TGTGACGCTGCCTGTGTTCCCCGCCACGGAGTGCGAGGCGAAAGACACAG
TGCTGAAAACCATGGCGGCGTTTGGGTGGCTCCCTGGAGACGGGGAGCGG
ATCAAAGATCTGCTGAAGCGCCTGTACTTGGGCTGCGGAGATGATGTCAA
CGCGCTCCACAAGTGCGGCAATGACGCCTTCAAGCGCAGAGACTACTACA
AGGCAGAGGCAGCTTATACCAAGGCACTGGAGCTAGCACCGTCGCATGTC
GAGCTGCTGTCCAACCGTGCCGCAACGCGACTTGAGCTGCGCTGGTTTAC
GGCAGCGGCGGCGGACGCTACAGCAGCGGCAATGCTTCGCCCAGACTGGG
CAAAGCCGCATGCTCGAGCTACCCGAGCGCACCTGGGGCGCAAAGACGGT
GCTGCTGCGCTAGCGTCAGCGCGCCGTGCAGCGGCGCTGCTT
back to top

protein sequence of jgi.p|Trimin1|163496

>Trimin1|163496|e_gw1.26.155.1 ID=Trimin1|163496|e_gw1.26.155.1|Name=jgi.p|Trimin1|163496|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=764bp
MDAAVDLTTYVHPREAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAA
RAALGADARVTVAGSVAKGTTVMGSDVDLYVETSKPVSLQQRQALEARLR
QHPLTNAAHVQLKLKAIHMQLLGMDIDVVCASTVEYGELPPADASVGADA
ALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQG
DGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFA
VSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMA
PAQQRATDAFFADFGGAATAKDTAASRTAASSSEEWTAHDGARIEALRLM
LDSPLGVYTTARMQAPAPGALTVHSVMTEITTLNQHAMRGSKVASKMLIA
RMMWVDGDLALRNGRADEAVELYAASLRASVADGDPFCGWWRADSKYVEC
ADSVLTRNPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGV
IHLRMCLYGNQGRWVEALQDASRCAALCPDEPIFHYWVAVGRRNTARPEA
AAAGAAQTLSALQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGDA
KFERARNAVRKAQAAEAVTLPVFPATECEAKDTVLKTMAAFGWLPGDGER
IKDLLKRLYLGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHV
ELLSNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARATRAHLGRKDG
AAALASARRAAALL
back to top

mRNA from alignment at Contig_26:406583..409071-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1887 ID=mRNA_1887|Name=jgi.p|Trimin1|163496|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2489bp|location=Sequence derived from alignment at Contig_26:406583..409071- (Tribonema minus UTEX_B_3156 )
ATGGACGCTGCGGTCGACTTGACCACCTACGTGCACCCCCGCGAGGCTCA
CGCCTTCAAGGATGCAGTGACTTTAGCTCAGCAGACTGGCGACTTCACGC
GTGGCGGCGGCAACCTGGAGTCGGCCGTGGCTATTGTGAGCAGTGCGGCG
CGCGCTGCTCTGGGTGCGGATGCTCGTGTCACCGTGGCCGGCAGCGTCGC
CAAGGGGACTACGGTCATGGGCAGCGACGTTGACCTATACGTCGAGACAT
CAAAACCAGTGTCGCTTCAGCAACGCCAAGCACTGGAGGCGCGCCTGAGA
CAGCACCCTCTCACCAACGCTGCGCACGTACAGCTCAAGCTCAAAGCTAT
TCACATGCAGCTGCTGGGGATGGACATTGACGTGGTCTGCGCCAGCACTG
TGGAGTACGGCGAACTGCCCCCAGCAGACGCAAGCGTTGGAGCAGATGCG
GCACTGCAGCTGGCGGTGCAAGCGCTGAAGATCTGGGCGCGATGTGCCAC
CGGAGGAGCACGCAAAGTCCCGGGACGCATGATGGAGGCGCTTGCTAAGC
ACTGCAGGGATGCTCGCGGCTCGTCTATCAGCTCGAGTTCACAGCAGGGG
GATGGCGGCATGCAACTCTTTGTTGCCGTACTGCAGGTCATTGCAGACGG
CGGCACCCAGCAGCCTCAGCTTCGCGCAGCTACAACGCTTGACTCTGCCG
GACGTACCGCTCTTCGTGCGCGCGCGCAAGCTGTGCTACACGTCTTTGCG
GTGTCGCGTGTCTTACTCTCGGGCAGCGAGGACAGCGACGGGGGGTTTCG
GACTGCTGCGGAGGTGCACGCGTGGCTCTCGGGGTACTCAGGGCAGGCGC
CGCTTGTACACACCCACGCCGGAGTTGCCCCAGGGTGGCTCTTCATGGCG
CCAGCTCAGCAGCGCGCCACAGACGCCTTCTTTGCCGATTTCGGGGGCGC
AGCAACGGCAAAGGACACGGCAGCTAGCAGAACGGCGGCCAGCAGCTCTG
AGGAGTGGACAGCTCATGACGGTGCGCGCATCGAGGCTCTGCGCTTGATG
CTAGACAGCCCCCTCGGTGTATACACAACCGCACGGATGCAAGCCCCAGC
GCCAGGTGCGCTTACGGTCCATAGCGTCATGACAGAAATCACCACCCTCA
ATCAGCATGCCATGCGGGGGTCCAAAGTAGCCAGCAAGATGCTGATCGCG
CGCATGATGTGGGTTGATGGCGACCTAGCGTTACGCAACGGGCGCGCAGA
TGAGGCTGTTGAGCTCTATGCGGCATCGCTGCGTGCGTCCGTGGCAGACG
GCGACCCATTCTGCGGGTGGTGGCGTGCGGACAGCAAGTATGTAGAGTGC
GCTGATTCCGTCCTCACCCGCAACCCTAACAGCGTCGACGCCCACATGCT
GCACGCATGGTCATTTATGCGCAGCGGTCGCTACAAAGACTCAGAGCGGG
TCTTGACGGCCACGATAGAGCGCCACGCACCCGATGATACACATGGTGTC
ATTCACCTGCGCATGTGTCTATACGGTAACCAGGGGCGTTGGGTGGAAGC
CCTGCAGGACGCGTCGCGGTGTGCGGCCCTATGCCCGGACGAGCCCATAT
TTCACTACTGGGTGGCGGTGGGGCGCCGCAACACCGCGCGGCCCGAGGCA
GCAGCTGCTGGCGCTGCGCAAACGCTGTCAGCACTTCAGCGTTTCGTAGC
GCACGCGCCCCCGGAGGGTCGCAAGGTGCCCATGGCGTGGTACGACATCG
CCATGCAGGAGGTGCTCGCCGGCCGCGGCGACGCACGCAGGGGCGATGCG
AAGTTCGAGCGCGCCAGAAACGCGGTTCGCAAGGCGCAAGCAGCTGAGGC
TGTGACGCTGCCTGTGTTCCCCGCCACGGAGTGCGAGGCGAAAGACACAG
TGCTGAAAACCATGGCGGCGTTTGGGTGGCTCCCTGGAGACGGGGAGCGG
ATGTCATCATCGCACGACACAGGCAAGTACTGATATGCTGATGAATCGAA
TCTCATGTCTCTTTGCCCTGTGTCATAGCTGTCTGTATGCATCTGCTTCA
AAAACTTGTAAAAGTTGGGTGTGTTGACTGGTTTTCCCACAGCACATATC
GCTCTGTTGCTCTTTGGCTTTCAGGGTCGGGCGAGGTGCCTCCCAGCAGC
AAAGATCTGCTGAAGCGCCTGTACTTGGGCTGCGGAGATGATGTCAACGC
GCTCCACAAGTGCGGCAATGACGCCTTCAAGCGCAGAGACTACTACAAGG
CAGAGGCAGCTTATACCAAGGCACTGGAGCTAGCACCGTCGCATGTCGAG
CTGCTGTCCAACCGTGCCGCAACGCGACTTGAGCTGCGCTGGTTTACGGC
AGCGGCGGCGGACGCTACAGCAGCGGCAATGCTTCGCCCAGACTGGGCAA
AGCCGCATGCTCGAGCTACCCGAGCGCACCTGGGGCGCAAAGACGGTGCT
GCTGCGCTAGCGTCAGCGCGCCGTGCAGCGGCGCTGCTT
back to top

Coding sequence (CDS) from alignment at Contig_26:406583..409071-

>mRNA_1887 ID=mRNA_1887|Name=jgi.p|Trimin1|163496|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2292bp|location=Sequence derived from alignment at Contig_26:406583..409071- (Tribonema minus UTEX_B_3156 )
ATGGACGCTGCGGTCGACTTGACCACCTACGTGCACCCCCGCGAGGCTCA
CGCCTTCAAGGATGCAGTGACTTTAGCTCAGCAGACTGGCGACTTCACGC
GTGGCGGCGGCAACCTGGAGTCGGCCGTGGCTATTGTGAGCAGTGCGGCG
CGCGCTGCTCTGGGTGCGGATGCTCGTGTCACCGTGGCCGGCAGCGTCGC
CAAGGGGACTACGGTCATGGGCAGCGACGTTGACCTATACGTCGAGACAT
CAAAACCAGTGTCGCTTCAGCAACGCCAAGCACTGGAGGCGCGCCTGAGA
CAGCACCCTCTCACCAACGCTGCGCACGTACAGCTCAAGCTCAAAGCTAT
TCACATGCAGCTGCTGGGGATGGACATTGACGTGGTCTGCGCCAGCACTG
TGGAGTACGGCGAACTGCCCCCAGCAGACGCAAGCGTTGGAGCAGATGCG
GCACTGCAGCTGGCGGTGCAAGCGCTGAAGATCTGGGCGCGATGTGCCAC
CGGAGGAGCACGCAAAGTCCCGGGACGCATGATGGAGGCGCTTGCTAAGC
ACTGCAGGGATGCTCGCGGCTCGTCTATCAGCTCGAGTTCACAGCAGGGG
GATGGCGGCATGCAACTCTTTGTTGCCGTACTGCAGGTCATTGCAGACGG
CGGCACCCAGCAGCCTCAGCTTCGCGCAGCTACAACGCTTGACTCTGCCG
GACGTACCGCTCTTCGTGCGCGCGCGCAAGCTGTGCTACACGTCTTTGCG
GTGTCGCGTGTCTTACTCTCGGGCAGCGAGGACAGCGACGGGGGGTTTCG
GACTGCTGCGGAGGTGCACGCGTGGCTCTCGGGGTACTCAGGGCAGGCGC
CGCTTGTACACACCCACGCCGGAGTTGCCCCAGGGTGGCTCTTCATGGCG
CCAGCTCAGCAGCGCGCCACAGACGCCTTCTTTGCCGATTTCGGGGGCGC
AGCAACGGCAAAGGACACGGCAGCTAGCAGAACGGCGGCCAGCAGCTCTG
AGGAGTGGACAGCTCATGACGGTGCGCGCATCGAGGCTCTGCGCTTGATG
CTAGACAGCCCCCTCGGTGTATACACAACCGCACGGATGCAAGCCCCAGC
GCCAGGTGCGCTTACGGTCCATAGCGTCATGACAGAAATCACCACCCTCA
ATCAGCATGCCATGCGGGGGTCCAAAGTAGCCAGCAAGATGCTGATCGCG
CGCATGATGTGGGTTGATGGCGACCTAGCGTTACGCAACGGGCGCGCAGA
TGAGGCTGTTGAGCTCTATGCGGCATCGCTGCGTGCGTCCGTGGCAGACG
GCGACCCATTCTGCGGGTGGTGGCGTGCGGACAGCAAGTATGTAGAGTGC
GCTGATTCCGTCCTCACCCGCAACCCTAACAGCGTCGACGCCCACATGCT
GCACGCATGGTCATTTATGCGCAGCGGTCGCTACAAAGACTCAGAGCGGG
TCTTGACGGCCACGATAGAGCGCCACGCACCCGATGATACACATGGTGTC
ATTCACCTGCGCATGTGTCTATACGGTAACCAGGGGCGTTGGGTGGAAGC
CCTGCAGGACGCGTCGCGGTGTGCGGCCCTATGCCCGGACGAGCCCATAT
TTCACTACTGGGTGGCGGTGGGGCGCCGCAACACCGCGCGGCCCGAGGCA
GCAGCTGCTGGCGCTGCGCAAACGCTGTCAGCACTTCAGCGTTTCGTAGC
GCACGCGCCCCCGGAGGGTCGCAAGGTGCCCATGGCGTGGTACGACATCG
CCATGCAGGAGGTGCTCGCCGGCCGCGGCGACGCACGCAGGGGCGATGCG
AAGTTCGAGCGCGCCAGAAACGCGGTTCGCAAGGCGCAAGCAGCTGAGGC
TGTGACGCTGCCTGTGTTCCCCGCCACGGAGTGCGAGGCGAAAGACACAG
TGCTGAAAACCATGGCGGCGTTTGGGTGGCTCCCTGGAGACGGGGAGCGG
ATCAAAGATCTGCTGAAGCGCCTGTACTTGGGCTGCGGAGATGATGTCAA
CGCGCTCCACAAGTGCGGCAATGACGCCTTCAAGCGCAGAGACTACTACA
AGGCAGAGGCAGCTTATACCAAGGCACTGGAGCTAGCACCGTCGCATGTC
GAGCTGCTGTCCAACCGTGCCGCAACGCGACTTGAGCTGCGCTGGTTTAC
GGCAGCGGCGGCGGACGCTACAGCAGCGGCAATGCTTCGCCCAGACTGGG
CAAAGCCGCATGCTCGAGCTACCCGAGCGCACCTGGGGCGCAAAGACGGT
GCTGCTGCGCTAGCGTCAGCGCGCCGTGCAGCGGCGCTGCTT
back to top