mRNA_18872 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Match: A0A836CCX9_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCX9_9STRA) HSP 1 Score: 362 bits (929), Expect = 5.950e-115 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1 Query: 1 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPRFTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRECDRPRVLAAATS 543 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPRFTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRECDRPRVLAAATS Sbjct: 873 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPRFTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRECDRPRVLAAATS 1053
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Match: A0A836CE47_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE47_9STRA) HSP 1 Score: 276 bits (706), Expect = 3.030e-90 Identity = 140/181 (77.35%), Postives = 157/181 (86.74%), Query Frame = 1 Query: 1 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPRFTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRECDRPRVLAAATS 543 SITGV LPLQYLDFLQVM +SLDLRWLTSPGCVLHLSFYQRLL++TLVPLGIAGVILAPR +R C+PR A+LQ V EKDLH+LLVFAFL+YSGVSLT+FQTFACD L+YDGP+GT++LRADYTIQCRTPEHTAY+ YAAIMLL+YPLGIPA+FA IRLG RE LA+ATS Sbjct: 15 SITGVALPLQYLDFLQVMDLISLDLRWLTSPGCVLHLSFYQRLLLTTLVPLGIAGVILAPRAYRLCKPRSAGAKLQRVCEKDLHVLLVFAFLVYSGVSLTIFQTFACDYLEYDGPDGTWYLRADYTIQCRTPEHTAYVTYAAIMLLMYPLGIPAIFAWMIRLGAADVRERS---ALASATS 192
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Match: A0A835Z2L6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2L6_9STRA) HSP 1 Score: 276 bits (707), Expect = 3.020e-84 Identity = 141/181 (77.90%), Postives = 157/181 (86.74%), Query Frame = 1 Query: 1 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPRFTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRECDRPRVLAAATS 543 SITGV LPLQYLDFLQVM +SLDLRWLTSPGCVLHLSFYQRLL++TLVPLGIAGVILAPR +R CRPR A+LQ V E+DLH+LLVFAFL+YSGVSLT+FQTFACD L+YDGP+GT++LRADYTIQCRTPEHTAY+ YAAIMLLVYPLGIPA+FA IRLG RE LA+ATS Sbjct: 658 SITGVALPLQYLDFLQVMDLISLDLRWLTSPGCVLHLSFYQRLLLTTLVPLGIAGVILAPRAYRRCRPRSAGAKLQRVCEQDLHVLLVFAFLVYSGVSLTIFQTFACDYLEYDGPDGTWYLRADYTIQCRTPEHTAYVTYAAIMLLVYPLGIPAIFAWMIRLGAADVRERS---ALASATS 835
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Match: A0A836CAK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK9_9STRA) HSP 1 Score: 275 bits (702), Expect = 7.160e-84 Identity = 140/181 (77.35%), Postives = 157/181 (86.74%), Query Frame = 1 Query: 1 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPRFTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRECDRPRVLAAATS 543 SITGV LPLQYLDFLQVM +SLDLRWLTSPGCVLHLSFYQRLL++TLVPLGIAGVILAPR +R CRPR A+LQ V E+D+H+LLVFAFL+YSGVSLT+FQTFACD L+YDGP+GT++LRADYTIQCRTPEHTAY+ YAAIMLLVYPLGIPA+F IRLG CDR LA+ATS Sbjct: 598 SITGVALPLQYLDFLQVMDLISLDLRWLTSPGCVLHLSFYQRLLLTTLVPLGIAGVILAPRAYRRCRPRSAGAKLQRVCEQDMHVLLVFAFLVYSGVSLTIFQTFACDYLEYDGPDGTWYLRADYTIQCRTPEHTAYLTYAAIMLLVYPLGIPALFVWLIRLGAAD--VCDRSG-LASATS 775
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Match: A0A836CA63_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA63_9STRA) HSP 1 Score: 275 bits (703), Expect = 1.870e-83 Identity = 140/181 (77.35%), Postives = 156/181 (86.19%), Query Frame = 1 Query: 1 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPRFTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRECDRPRVLAAATS 543 SITGV LPLQYLDFLQVM +SLDLRWLTSPGCVLHLSFYQRLL++TLVPLGIAGVILAPR +R CRPR A+LQ V E+DLH+LLVFAFL+YSGVSLT+FQTFACD L+YDGP+GT++LRADYTIQCRTPEHTAY+ YA IMLLVYPLGIPA+FA IRLG RE LA+ATS Sbjct: 701 SITGVALPLQYLDFLQVMDLISLDLRWLTSPGCVLHLSFYQRLLLTTLVPLGIAGVILAPRAYRRCRPRSAGAKLQRVCEQDLHVLLVFAFLVYSGVSLTIFQTFACDYLEYDGPDGTWYLRADYTIQCRTPEHTAYVTYAVIMLLVYPLGIPAIFAWMIRLGAADVRERS---ALASATS 878
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Match: A0A835YQ60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ60_9STRA) HSP 1 Score: 271 bits (693), Expect = 9.610e-83 Identity = 138/181 (76.24%), Postives = 152/181 (83.98%), Query Frame = 1 Query: 1 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPRFTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRECDRPRVLAAATS 543 SITGV LPLQYLDFLQVM +SLDLRWLTSP CVLHLSFYQRLL++TLVPLGIAGVI APR +RWCRPR A+LQ V E+DLH+LLVFAFL+YSGVSLT+FQTFACD L+YDGP+GT++LRADY IQCRTPEH AY IYAA+MLLVYPLGIPA FA IRLG RE L AATS Sbjct: 568 SITGVALPLQYLDFLQVMDLISLDLRWLTSPECVLHLSFYQRLLLTTLVPLGIAGVIFAPRAYRWCRPRSVGAKLQRVCEQDLHVLLVFAFLVYSGVSLTIFQTFACDNLEYDGPDGTWYLRADYRIQCRTPEHAAYGIYAAVMLLVYPLGIPAAFAWMIRLGAADVRERS---ALTAATS 745
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Match: A0A835YUK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUK8_9STRA) HSP 1 Score: 273 bits (699), Expect = 1.060e-82 Identity = 139/181 (76.80%), Postives = 156/181 (86.19%), Query Frame = 1 Query: 1 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPRFTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRECDRPRVLAAATS 543 SITGV LPLQYLDFLQVM +SLDLRWLTSPGCVLHLSFYQRL+++TLVPLGIAGVILAPR +R CRPR A+LQ V E+DLH+LLVFAFL+YSGVSLT+FQTFACD L+YDGP+GT++LRADYTIQCRTPEH AY+ YAAIMLLVYPLGIPA+FA IRLG RE LA+ATS Sbjct: 836 SITGVALPLQYLDFLQVMDLISLDLRWLTSPGCVLHLSFYQRLVLTTLVPLGIAGVILAPRAYRRCRPRSAGAKLQRVCEQDLHVLLVFAFLVYSGVSLTIFQTFACDYLEYDGPDGTWYLRADYTIQCRTPEHAAYVTYAAIMLLVYPLGIPAIFAWLIRLGAADVRERS---ALASATS 1013
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Match: A0A835ZAG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAG3_9STRA) HSP 1 Score: 220 bits (560), Expect = 8.400e-67 Identity = 112/187 (59.89%), Postives = 142/187 (75.94%), Query Frame = 1 Query: 1 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPR----FTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPN--GTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRECDRPRVLAAATS 543 SITGV +P YL+FL V+ ++LDLRWL S GC++ L+FYQRL +STLVPLGIA ++LAPR + WCR R F +L+ EKDL++LLVFAFLI+SGVSLTVFQTF C+ L YDGP GT +L ADY+++C TP HTAY +YA +M+ VYP+GIPAMFA+ IR GV S + D+P +L AATS Sbjct: 126 SITGVPVPSVYLEFLHVVDVLTLDLRWLPSAGCLVRLNFYQRLCLSTLVPLGIAVLLLAPRAYLWCRTRSGRSFVGVKLRRFVEKDLNILLVFAFLIFSGVSLTVFQTFVCETLNYDGPQAGGTSYLLADYSLECGTPRHTAYTVYAVVMVAVYPIGIPAMFAVIIRQGVRTSGDGDQPAMLTAATS 312
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Match: A0A835YI67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI67_9STRA) HSP 1 Score: 200 bits (509), Expect = 5.930e-57 Identity = 101/173 (58.38%), Postives = 126/173 (72.83%), Query Frame = 1 Query: 1 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPR----TFRWCRPRFTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFALTIRLGVIHSRE 507 SITG++LP YL FL+ M ++LD+RWLTSPGC L + FYQ+LL+STL PL + +I PR R R SA+LQ V KD + LVF FLI+SGVSLT+F+TFACD L+YDGP+GT +LRADY++QC TPEHTAY IYAAIM+LVYP GIPAM+ L +R + E Sbjct: 427 SITGLSLPPDYLKFLRAMDVLTLDMRWLTSPGCALTIGFYQKLLISTLAPLAVVALIFTPRLCVSAARRGRRACGSAKLQRVAAKDFNAFLVFTFLIFSGVSLTIFETFACDFLRYDGPDGTSYLRADYSVQCFTPEHTAYRIYAAIMILVYPFGIPAMYCLVLRRCAVEKGE 599
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Match: A0A836CIF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF1_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.470e-51 Identity = 95/161 (59.01%), Postives = 123/161 (76.40%), Query Frame = 1 Query: 1 SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPLGIAGVILAPRTFRWCRPR----FTSARLQHVYEKDLHLLLVFAFLIYSGVSLTVFQTFACDLLKYDGPNGTYFLRADYTIQCRTPEHTAYMIYAAIMLLVYPLGIPAMFA 471 SITG+ LPLQYLDFL+ + F++ DLRWLTSPGC ++++FY+RLL+ST+VPL + G+I PR R R F A+L+ + EKDL+ LLVF FLI+SGVSLTV QTF+CD G + +LRADY+IQC TP+HTAY +YA +M+LVYPLGIPA+FA Sbjct: 317 SITGLALPLQYLDFLRGIDFLTFDLRWLTSPGCAMNVNFYERLLLSTVVPLIVCGIIFIPRGCLRYRTRAGRTFNGAQLRTLVEKDLNTLLVFTFLIFSGVSLTVLQTFSCDDFPLIGKS---YLRADYSIQCNTPKHTAYQVYAGVMVLVYPLGIPALFA 474 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136475 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18872 ID=mRNA_18872|Name=jgi.p|Trimin1|136475|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_527:68..610+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGCATCACCGGCGTCACTTTGCCGCTACAGTACCTGGACTTCCTGCAGGTback to top protein sequence of jgi.p|Trimin1|136475 >Trimin1|136475|gw1.527.1.1 ID=Trimin1|136475|gw1.527.1.1|Name=jgi.p|Trimin1|136475|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp SITGVTLPLQYLDFLQVMTFMSLDLRWLTSPGCVLHLSFYQRLLMSTLVPback to top mRNA from alignment at Contig_527:68..610+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18872 ID=mRNA_18872|Name=jgi.p|Trimin1|136475|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=543bp|location=Sequence derived from alignment at Contig_527:68..610+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_527:68..610+ >mRNA_18872 ID=mRNA_18872|Name=jgi.p|Trimin1|136475|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=543bp|location=Sequence derived from alignment at Contig_527:68..610+ (Tribonema minus UTEX_B_3156 )back to top |