mRNA_18846 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354609
Unique Name	mRNA_18846
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354609 vs. uniprot
Match: A0A836CFM2_9STRA (ADP,ATP carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM2_9STRA)

HSP 1 Score: 526 bits (1356), Expect = 1.750e-187
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 1

Query:    1 MVFGYVRRYGDHLPRHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIGDSDDSAAAALPAHLRSKSRSGSGHSWHARSSSGARSHSGSVDDEDGIELPEATALRSSA 855
            MVFGYVRRYGDHLPRHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIGDSDDSAAAALPAHLRSKSRSGSGHSWHARSSSGARSHSGSVDDEDGIELPEATALRSSA
Sbjct:    1 MVFGYVRRYGDHLPRHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIGDSDDSAAAALPAHLRSKSRSGSGHSWHARSSSGARSHSGSVDDEDGIELPEATALRSSA 285

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BLAST of jgi.p|Trimin1|354609 vs. uniprot
Match: D8LFS7_ECTSI (ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS7_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 1.200e-74
Identity = 144/262 (54.96%), Postives = 181/262 (69.08%), Query Frame = 1

Query:    1 MVFGYVRRYGDHLPR----------------------HRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIG---DSDDSAAAALP 711
            +V GYV  +G++LPR                      H++V ++ GISCLYE+ LT+LDYQMKV+GV  FR      E  G  A E+ A+LMG FGQ TN LSL++SL GTSL VR LGL  TL +FP LLV+A+V S+F PSL  LFVAV++LKGLTYALNEPCKEMLY+ TSD+IKFKAK WIDVFGSR AKG+GS +T +S+G++  L TYG  A FL+SL LLG+S V+G  F  L+++G+I+G   D DDS  A  P
Sbjct:  262 LVRGYVLFFGNNLPRERLTNVQGTVDSALNGLKLVLRHQYVALLFGISCLYEVVLTILDYQMKVLGVEMFR------ETAGDEADEHMASLMGHFGQTTNSLSLIMSLFGTSLCVRLLGLRKTLRIFPTLLVVAVVTSFFAPSLSFLFVAVAILKGLTYALNEPCKEMLYLPTSDAIKFKAKGWIDVFGSRCAKGVGSFVTLSSRGDRRRLATYGGVASFLISLILLGVSYVMGGHFDALIKSGEIVGAGEDGDDSGNAGAP 517

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BLAST of jgi.p|Trimin1|354609 vs. uniprot
Match: A0A7S2G6R9_9STRA (ADP,ATP carrier protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G6R9_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.790e-73
Identity = 131/216 (60.65%), Postives = 161/216 (74.54%), Query Frame = 1

Query:   43 RHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIGDSDD 690
            R+ +V++ILGISCLYEI LTVLDY+MKV+G A++        G     SE FAALMG FGQATN +S + SLLGTSL+VR LGL  TL VFPVLL L ++VSYF+PSLWVLF ++S LK LTYALNEP KEMLYM TSD IKFKAKAWIDVFG+R+AK +GS IT T+K   ++L+ YGS    LVS  L G+S++VG++F  LV  G ++G   D
Sbjct:   87 RYDYVLLILGISCLYEIVLTVLDYEMKVIGRARY--------GSDVDGSEQFAALMGHFGQATNIISCVFSLLGTSLVVRNLGLRRTLRVFPVLLTLTVIVSYFYPSLWVLFASISCLKALTYALNEPSKEMLYMPTSDLIKFKAKAWIDVFGARMAKALGSTITNTAKSQPELLVQYGSIPSLLVSFALFGISVLVGRQFEDLVAAGVVVGGETD 294

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BLAST of jgi.p|Trimin1|354609 vs. uniprot
Match: A0A836CF89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF89_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.090e-54
Identity = 114/155 (73.55%), Postives = 115/155 (74.19%), Query Frame = 1

Query:    1 MVFGYVRRYGDHLPR--------------------------HRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGE--------GGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPS 363
            MVFGYVRRYGDHLPR                          HRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALR E             ASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHP+
Sbjct:    1 MVFGYVRRYGDHLPRETAAEAAVREGGKGGGALEGLKLIFRHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALREELIXXXXXXXXXXXASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPA 155

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BLAST of jgi.p|Trimin1|354609 vs. uniprot
Match: A0A7S0IL69_9EUKA (ADP,ATP carrier protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IL69_9EUKA)

HSP 1 Score: 190 bits (482), Expect = 6.230e-53
Identity = 106/214 (49.53%), Postives = 144/214 (67.29%), Query Frame = 1

Query:   37 LPRHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIG 678
            L +H +V+ I  +S L+EI  T+LDYQMKV+G A   + A            +FA+ MG FGQATN +SL+ S++GTS ++R LGL +TL +FPV L+  + V Y+ PS+WVLF  +  +KGL+YALN P KEMLYMVT+DSIKFKAK+WIDVFG R +K +GS+IT T K     L+ YGS   F ++  LL ++  +G+ F +L  T QIIG
Sbjct:  245 LFKHPYVLGIFAVSALFEIIATILDYQMKVLGKAAHSSTA------------DFASFMGLFGQATNSVSLVFSVVGTSFVIRSLGLRYTLMLFPVALMAVVCVVYYSPSMWVLFWVMVTIKGLSYALNNPSKEMLYMVTTDSIKFKAKSWIDVFGGRASKALGSVITNTFKKPVTALMLYGSLISFGIAAALLLITSALGRAFERLTATDQIIG 446

[Close]

BLAST of jgi.p|Trimin1|354609 vs. uniprot
Match: A0A7S4B9D6_CHRCT (ADP,ATP carrier protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B9D6_CHRCT)

HSP 1 Score: 187 bits (475), Expect = 6.640e-53
Identity = 104/214 (48.60%), Postives = 143/214 (66.82%), Query Frame = 1

Query:   37 LPRHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIG 678
            L RH +V+ I  +S L+E+  T+LDYQMKV+G A   + A            +FA+ MG+FGQATN +SL+ S++GTS ++R LGL  TL +FP  LV+ I + Y  PS+WVLF  +  +KGL+YALN P KEMLYMVT+DSIKFKAK+WIDVFG R +K MGS++T   K     L+ YGS     ++ GLL ++ ++G+ F +L  T Q+IG
Sbjct:  145 LFRHPYVLGIFAVSALFEVIATILDYQMKVLGKASHNSTA------------DFASFMGQFGQATNSVSLIFSVVGTSFVIRNLGLRLTLMLFPATLVVVIGLVYSSPSMWVLFWVMVTIKGLSYALNNPSKEMLYMVTTDSIKFKAKSWIDVFGGRASKAMGSVVTNAFKKPVSALMLYGSLISLAIACGLLLVTSLLGRAFERLSTTEQLIG 346

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BLAST of jgi.p|Trimin1|354609 vs. uniprot
Match: A0A7S3TPR1_EMIHU (ADP,ATP carrier protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TPR1_EMIHU)

HSP 1 Score: 190 bits (482), Expect = 1.110e-52
Identity = 104/214 (48.60%), Postives = 144/214 (67.29%), Query Frame = 1

Query:   37 LPRHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIG 678
            L RH +V+ I  +S L+E+  T+LDYQMKV+G A + + A            +FA+ MG FGQA N +SL+ SLLGTS ++R  GL  TL +FP +LV+ + V YF PS+W LF  +  +KGL+YALN P KEMLYMVT+DSIKFKAK+WIDVFG R +K +GS++T T K     L+ YGS     ++LGLL ++  +G+ F +L  +G++IG
Sbjct:  276 LIRHPYVLGIFAVSALFEVIATILDYQMKVLGKAAYSSTA------------DFASFMGMFGQAANTVSLVFSLLGTSFVIRNFGLRPTLMLFPTMLVVVVGVVYFVPSMWCLFGVMVAIKGLSYALNNPSKEMLYMVTTDSIKFKAKSWIDVFGGRASKALGSVVTNTFKKPVTNLMFYGSLVSLAIALGLLAITSTLGRAFERLTASGELIG 477

[Close]

BLAST of jgi.p|Trimin1|354609 vs. uniprot
Match: A0A7S2LHP9_9STRA (ADP,ATP carrier protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHP9_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.440e-52
Identity = 99/219 (45.21%), Postives = 152/219 (69.41%), Query Frame = 1

Query:   43 RHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIGDSDDSAA 699
            RH +++++LG+SCLYE+ LTV+DY+MK++G+A   ++   G      +S  FAA MG FG ATN LSL+LS  G S ++RK GL +++ V+P+ LV+   +S+  P+LWVLF ++++LK +TY++ +PCKE+LY+ TS+ +KFKAK WIDV G+R+AK +GS I   S+ N   LI YG     L SL LL +S+  G+ F ++V +G +IG  +++ A
Sbjct:   71 RHNYLIIVLGVSCLYEVVLTVMDYEMKLVGLAAVDSSESAGN-----SSNTFAAFMGSFGIATNALSLILSFFGFSFLMRKFGLRYSIRVYPLFLVVGAFLSFLVPNLWVLFASMAILKAMTYSIYDPCKEILYVPTSNDVKFKAKFWIDVVGARLAKAVGSSINSLSEANTRRLIQYGCIPSLLTSLLLLLVSIHAGKLFEEIVDSGIVIGAEENTQA 284

[Close]

BLAST of jgi.p|Trimin1|354609 vs. uniprot
Match: A0A7S0LVZ6_9EUKA (ADP,ATP carrier protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LVZ6_9EUKA)

HSP 1 Score: 188 bits (477), Expect = 4.400e-52
Identity = 105/214 (49.07%), Postives = 142/214 (66.36%), Query Frame = 1

Query:   37 LPRHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIG 678
            L +H +V+ I  +S L+EI  T+LDYQMKV+G A   + A            +FAA MG FGQATN +SL+ SL+GTS ++R  GL +TL +FP  L+L + V YF PS+WVLF  +  +KG++YALN P KEMLYMVT+DSIKFKAK+WIDVFG R +K +GS+IT   K     L+ YGS    +++  LL ++  +G+ F +L  T QIIG
Sbjct:  260 LVKHPYVLGIFAVSALFEIIATILDYQMKVLGKAAHSSTA------------DFAAFMGLFGQATNSVSLIFSLIGTSFVIRSFGLRYTLMLFPAALILVVGVVYFAPSMWVLFWVMVSIKGISYALNNPSKEMLYMVTTDSIKFKAKSWIDVFGGRASKALGSVITNIFKKPVTALMLYGSLISLVIAGMLLVITSALGRAFERLTATDQIIG 461

[Close]

BLAST of jgi.p|Trimin1|354609 vs. uniprot
Match: A0A7S4B8I1_CHRCT (ADP,ATP carrier protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B8I1_CHRCT)

HSP 1 Score: 187 bits (475), Expect = 6.210e-52
Identity = 104/214 (48.60%), Postives = 143/214 (66.82%), Query Frame = 1

Query:   37 LPRHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRAAALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPFTLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMVTSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLVSLGLLGLSLVVGQEFSKLVRTGQIIG 678
            L RH +V+ I  +S L+E+  T+LDYQMKV+G A   + A            +FA+ MG+FGQATN +SL+ S++GTS ++R LGL  TL +FP  LV+ I + Y  PS+WVLF  +  +KGL+YALN P KEMLYMVT+DSIKFKAK+WIDVFG R +K MGS++T   K     L+ YGS     ++ GLL ++ ++G+ F +L  T Q+IG
Sbjct:  242 LFRHPYVLGIFAVSALFEVIATILDYQMKVLGKASHNSTA------------DFASFMGQFGQATNSVSLIFSVVGTSFVIRNLGLRLTLMLFPATLVVVIGLVYSSPSMWVLFWVMVTIKGLSYALNNPSKEMLYMVTTDSIKFKAKSWIDVFGGRASKAMGSVVTNAFKKPVSALMLYGSLISLAIACGLLLVTSLLGRAFERLSTTEQLIG 443

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354609 vs. uniprot

BLAST of jgi.p|Trimin1|354609 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CFM2_9STRA	1.750e-187	100.00	ADP,ATP carrier protein n=1 Tax=Tribonema minus Ta...	[more]
D8LFS7_ECTSI	1.200e-74	54.96	ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S2G6R9_9STRA	1.790e-73	60.65	ADP,ATP carrier protein (Fragment) n=1 Tax=Dictyoc...	[more]
A0A836CF89_9STRA	1.090e-54	73.55	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S0IL69_9EUKA	6.230e-53	49.53	ADP,ATP carrier protein n=1 Tax=Calcidiscus leptop...	[more]
A0A7S4B9D6_CHRCT	6.640e-53	48.60	ADP,ATP carrier protein n=1 Tax=Chrysotila cartera...	[more]
A0A7S3TPR1_EMIHU	1.110e-52	48.60	ADP,ATP carrier protein n=2 Tax=Emiliania huxleyi ...	[more]
A0A7S2LHP9_9STRA	2.440e-52	45.21	ADP,ATP carrier protein n=1 Tax=Leptocylindrus dan...	[more]
A0A7S0LVZ6_9EUKA	4.400e-52	49.07	ADP,ATP carrier protein n=1 Tax=Coccolithus braaru...	[more]
A0A7S4B8I1_CHRCT	6.210e-52	48.60	ADP,ATP carrier protein n=2 Tax=Chrysotila cartera...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_289	contig	Contig_289:231..7381 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354609\|estExt_Genemark1.C_Ctg_2890001
Description	TLC ATP/ADP transporter
COG category	C
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG3202@1\|root,2R2N3@2759\|Eukaryota
Evalue	4.31e-76
Seed ortholog	2880.D8LFS7
Hectar predicted targeting category	other localisation
TranscriptId	354931
Track	FilteredModels1
ProteinId	354609

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354609	gene_18846	Tribonema minus UTEX_B_3156	gene	Contig_289 231..7381 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354609	Trimin1\|354609\|estExt_Genemark1.C_Ctg_2890001	Tribonema minus UTEX_B_3156	polypeptide	Contig_289 231..7249 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_18846_1	exon_18846_1	Tribonema minus UTEX_B_3156	exon	Contig_289 231..274 +
exon_18846_2	exon_18846_2	Tribonema minus UTEX_B_3156	exon	Contig_289 1753..1868 +
exon_18846_3	exon_18846_3	Tribonema minus UTEX_B_3156	exon	Contig_289 1945..2073 +
exon_18846_4	exon_18846_4	Tribonema minus UTEX_B_3156	exon	Contig_289 2533..2585 +
exon_18846_5	exon_18846_5	Tribonema minus UTEX_B_3156	exon	Contig_289 3475..3600 +
exon_18846_6	exon_18846_6	Tribonema minus UTEX_B_3156	exon	Contig_289 4487..4599 +
exon_18846_7	exon_18846_7	Tribonema minus UTEX_B_3156	exon	Contig_289 5440..5527 +
exon_18846_8	exon_18846_8	Tribonema minus UTEX_B_3156	exon	Contig_289 7061..7381 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_18846	CDS_18846	Tribonema minus UTEX_B_3156	CDS	Contig_289 231..274 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_18846	UTR3_18846	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_289 7250..7381 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_289:231..7381+
coding sequence from alignment at Contig_289:231..7381+

spliced messenger RNA

>mRNA_18846 ID=mRNA_18846|Name=jgi.p|Trimin1|354609|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_289:231..7381+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTTTGGCTACGTGCGCCGCTATGGCGACCACCTGCCAAGGCACCG
CTTCGTGGTCATGATCCTCGGCATCAGCTGCCTGTACGAAATCGCCCTCA
CGGTGCTAGACTACCAGATGAAAGTCATGGGGGTGGCCAAATTTCGGGCA
GCGGCGCTGCGTGGAGAGGGGGGGGGGTCGGCTGCCTCTGAAAACTTTGC
GGCGCTGATGGGGCGGTTCGGCCAGGCGACCAACGGTCTGTCGCTGCTGC
TGAGCCTTCTGGGGACGAGCCTGATCGTGCGGAAGCTGGGGCTACCATTC
ACGCTGACGGTGTTTCCAGTGCTGCTGGTGCTGGCCATTGTGGTGAGCTA
CTTCCACCCCAGCCTCTGGGTGCTGTTTGTGGCGGTGAGCATGCTCAAGG
GGCTCACCTACGCGCTCAACGAGCCGTGCAAGGAGATGCTCTACATGGTC
ACCAGCGACAGCATCAAGTTTAAGGCGAAAGCCTGGATAGATGTGTTTGG
CTCGCGCGTGGCCAAGGGCATGGGGTCCATCATCACAGGCACCTCCAAGG
GCAACAAGGACGTGCTTATCACGTATGGCAGCTTTGCCATATTTCTGGTC
AGCCTCGGTCTGCTGGGGCTCAGCCTGGTCGTCGGGCAGGAGTTCTCAAA
ACTGGTCCGGACCGGGCAGATCATTGGCGACTCCGATGATTCGGCGGCGG
CGGCGCTGCCGGCGCACCTGCGCTCAAAGAGCCGCAGCGGGTCCGGGCAC
AGCTGGCACGCGCGCAGCAGCAGCGGCGCACGCTCGCACAGCGGCTCCGT
CGACGACGAGGACGGCATTGAGTTGCCAGAGGCAACCGCTCTGAGAAGCA
GTGCCTGATCTGAGTCACCACAATGTGCTGTATGTTGTAAATAAATCAAG
CACAAGCGACCGCTCTGAGAGACAGTGCCTGACCTTGTCAGCGCGATCTG
CTATACAGCACCTACGTTGTAAATGAATGAGACACAAGAG

protein sequence of jgi.p|Trimin1|354609

>Trimin1|354609|estExt_Genemark1.C_Ctg_2890001 ID=Trimin1|354609|estExt_Genemark1.C_Ctg_2890001|Name=jgi.p|Trimin1|354609|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=286bp
MVFGYVRRYGDHLPRHRFVVMILGISCLYEIALTVLDYQMKVMGVAKFRA
AALRGEGGGSAASENFAALMGRFGQATNGLSLLLSLLGTSLIVRKLGLPF
TLTVFPVLLVLAIVVSYFHPSLWVLFVAVSMLKGLTYALNEPCKEMLYMV
TSDSIKFKAKAWIDVFGSRVAKGMGSIITGTSKGNKDVLITYGSFAIFLV
SLGLLGLSLVVGQEFSKLVRTGQIIGDSDDSAAAALPAHLRSKSRSGSGH
SWHARSSSGARSHSGSVDDEDGIELPEATALRSSA*

mRNA from alignment at Contig_289:231..7381+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_18846 ID=mRNA_18846|Name=jgi.p|Trimin1|354609|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7151bp|location=Sequence derived from alignment at Contig_289:231..7381+ (Tribonema minus UTEX_B_3156 )
ATGGTTTTTGGCTACGTGCGCCGCTATGGCGACCACCTGCCAAGGTGAGC
AGTTAAACCCTAATCCTGAACTTCAATACATAATAGTTTCTTATCGTACA
ACTCTCAATTCTGGGCCCAACGATGGCAACGCTTGCCGGCTCGTGGTTAC
AGTGGGCAGTCTTCTGCTGGGGGGGGGCGCTGTCATATGCGCTCACTGCC
CTCATGGTTTGTGGCTATGTGCGCCGCTACGGCGGCCACCTGCCGAGGTG
AGCAGTTGAGCCCCAGCTAACACGCTGACCTAATTCTGATCATATCTAGC
AGTTGTTGGCTCTACGCTCGCCACCGCCTGCCGAAGTGAGAAGCGCAACT
ACAACCCTCAACTTCAAGTCCCAGTTACGTATGCACACCCTACATTTCGA
GTACCCAGCATTTGGTGGAGCCGCCACCGACACCTGGCGCTGGCACTCGA
TCTGCGCACTTAACTCTGGCACTCCAATTCTGAAGCCCACTCATCAGAGA
AGCGTTCCACTGCGACGCGATGTGCAATGCCACAGAGATCATTGCTCATG
TGAGCTAACAGTTGAGTTGTTGACCAATGGTAACACTTGACGCAATCAAG
ACGTTGCCTTGTTGTGGCGCTTGACGCAGTCAGGACATGGAAAGCGTTTC
TGTCGGCATTCCACATTATCATGGCGTTTTCTGCGTGCCGAACCTGCCCC
AGCCGCCTTCTCAACTGCATAGTATACTCTGAACTCAACACTGTCATCGT
ATACCTACCCGTGACCCATGCGGTGGCTGCATACCCTGCATTCCTTGCAT
CTGGCACCCCCTATACCCACACTCACTCATGACGCTGTGGCCGTGCCGCT
AACTGCGCTTGTTGCACGTGCGGCTGCGGCCACCGCACCTTCTCCAAAAT
ATATCAAACATGTTTTAACCGTACAGTACCAAGCCCTGACCGTTGGCACC
AGTTGAGCAGTGTGCGCGTACATTCCTGCTTCAAGTCGAAATTGCTGCAT
TTTCATCAACCTCTGGTGCATTGGTTGCTGTTGCAGAGAAACTGCGGCAG
AAGCGGCAGTGCGGGAGGGGGGCAAAGGGGGGGAGCCCTCGAGGGGCTCA
AATTGATATTCAGGTAATTGGGCATATTTCTTGTCAGTTTGCCAGAAATC
TGCTTGCTGTGTGGTTATCCACATTTTGCGCTTGTACAAACCTTTTTGAC
ACAGATGGGTAGTAGCGCTTCCCCTCTCATGGTGCTTGCTCCATGGCTTG
GCTCAATGCACCTCGCAAGCTCTATGCAGCATGGCCACACTCTGGCAAAC
AAAAAGTGTTCTTTGCTATTACAGATTTGTTGTGATGCCTGGTGTGGCCA
ATTGATAGTGGGAGCATATTACAATCCCCAAGAAACTATTTATGTTTATT
CAAGGTATTTCACCACTATGCTCTTGAACACTTCCGCCACCCACAAGTAC
ATCGCGCCCAGAGCGAAAATTAATAGAAAGCACATCTGCTCACATACTTG
CCCTTGCCTTGCTCCGTCACAGGCACCGCTTCGTGGTCATGATCCTCGGC
ATCAGCTGCCTGTACGAAATCGCCCTCACGGTGCTAGACTACCAGATGAA
AGTCATGGGGGTGGCCAAATTTCGGGCAGCGGCGCTGCGTGAGGAGCTAA
TCTTAGCGGGGGGGTACGCGCCCTATGGGCCGCTCACAGGGGGGGGGTAT
GAGTCCCTCTGGAGGTGGAGAGGGGGGGGGGTCGGCTGCCTCTGAAAACT
TTGCGGCGCTGATGGGGCGGTTCGGCCAGGCGACCAACGGTCTGTCGCTG
CTGCTGAGCCTTCTGGGGACGAGCCTGATCGTGCGGAAGCTGGGTGAGCA
GCGTGCTGTGCTGGCTTAATTCAAACAGATGTGACGCTCGCATTACAATT
AGTTGAGGTTGATGTTGAGTTTGGACGTAAAACGTGAACCGCCTGTTTTT
CTGCTGCGTCATGGTGCGTGGCACGGTTGCAGTGGGCACTATCTTTCATG
TTCATGGTCTACCGAGAGGTTTCAGCATTCCATCCAGTCACCTGTGCCCT
CTCACACGCGTGACCTGGTACAGACTTATTATAACTGTGAATGTGACAGT
TACTGTGCTGATTTTTTGGTTCAACGGAAGCTCATGATCGTTTCTGCATC
ATCGTGTGTCCTGAGCTTTGTAACCCATTGATGTCAAGCTGACATTGACT
CAAAGCACAATTCATTGTTGGTGAGCACTGCTGCAGTATACACTTGCTTC
ATTTCCACCAACGGTCGTCACGTTTGTTATGGTCTGTCTATTTCTGCTGC
AGGGCTACCATTCACGCTGACGGTGTTTCCAGTGCTGCTGGTGCTGGCCA
TTGTGGTAAGCAGCCACGCCTTGCATCAGTCAGGGTTAGGGTTCGTGATG
CCTAGATCCTTAGGCACTCGTCTAGTGTGGTGCGCACACATGTCAAGGCA
GGCGAGGGGGCGCTGCACAGGTTGCAAAGTGATTGAAAGCCGGACTCAGT
TGAAGTTTGAACTCGCTTGTAAACGCTTTTGCATCAAGGCCTGCATCCTT
ACCGTCGCATACCCCAACAATGTGAGTGCTGGAACGCGAGCAGGCAGTGA
CATGATCAGGAGCGCCAATATACATCTGCAGTACCGCTATCATCTGTACG
CGCAGATCAGGTGCTGTCATTTTAGCCTACATTTTCTGTTTGCGACTGCC
GCCATGCTCCAGAAGTCACACATCGTGCCGCCCGTTATTCTTTGGTTTTG
GTCTGCGCGTCACGGCATCTTCTCTGGCACTTGCGTGAGCGCCAGCCCTC
TCAGTGCCCACGTGCTGTGTGGGGCAGAAAAGAATGCGCTCAGGGTTAAT
GTCATGGTCACGTTACCCAACACCTAACCCTACCCTACCTTGAGTCTAAT
TGTGACCGTAACCCTAACCCCAACATACCACATTGACCATTACAGCAGTC
CCTCACAAAGGCACCCCGGACTGGTTTGCTTATTTGCGCACTGGTTTGCG
CACGCGCAGCGCGCGCCTGTGCGCGCTGCTTGCGGCAGTGAGCACGCTGA
TGGCCTTACATTCATCTGTGATCTTGTGTGCACGTTTCTCGACGGGCACG
CTGGATATACATTCACTCTCATGCACAGATTTGCTGCCGCGTTGCTCCTT
GTAGTCAGCGCCTCGAGAGCGCCCCTCTGACTGCCCCCCCCCCCCCCCCC
CCCCCCCCGCGGCCCCCTTCCGCCCCCCCTTCTGCACCCCTTAGGTGAGC
TACTTCCACCCCAGCCTCTGGGTGCTGTTTGTGGCGGTGAGCATGCTCAA
GGGGCTCACCTACGCGCTCAACGAGCCGTGCAAGGAGATGCTCTACATGG
TCACCAGCGACAGCATCAAGGCGAGTTTGCGACGCCGTCTTGTTGATGTT
TCTTAAATAGTATCATTTAGAAAATTGTAAGTTGCTGCTAGTGAGTGCGC
CTTAAAGCCATCGGCACCAGGGCAGGGCGATGAAATATGCTTTGCATGGT
CACCAGCGACAGCATCAATGCGAGTTTGCAACTCCGTGTTGTTGATGCTA
CTGAACACTGTGCTGTGTGTGCGGTAAAGCCATCGGTGCCAGATGAAATA
GGCTCTATAGGGTCACAAGCGACAGCATCAAGGCAAGTTTGCGACTCCGC
GTTGTTGATGTTATCGAAAATTGTGCTGTATAAGCGGTACAGCCGTCGGC
GCCAGCAGGCAGGGAGATGGAATATTTTTGACATGGTCACTAGCGACAGC
ATCACGGCGAGTTCACGGATCCTCTTTGTTGATGATGCTAAAAACGGTGC
TCTGTGTGTCCCCCGGGCCTCTCCCCTTCCCCTTTGTAGCCCCCATGGGG
GGGTTTGTAGAGGGGTGTGCCAGGAAGACAAACGCTCTGTGTACAGTAGA
GCCATCGGCGCCAGGGCAAGGGAGATGAAATGTGGGGTTGGAATACTCCA
CAGCCCACTGTGTGAGCAGACTGACAAAGGTCCTCAGCTCAGACAAGCGA
ATTTGCTGTGCTGGATGCATTCGACTAGGCCCTGACACCACTGGAATCTG
CAAAAGGGGGATTGGGACACGCGTCGGGAGCTGCTGAATGTGCTTGCGGC
TATTGCACCTGTAACCTTTATCATCTTCCGTCGTGGCATACCAAGTCTTC
TGTGTGCCGAACGTTTGTCATCTTTAAGTTGAACTTGTACTCAAATGCAT
TGCGATCCTCGCTGCGGCCCCTGTTTGTGCCGCCATTTGCGCGTGCGCTC
TCGCAGTTTAAGGCGAAAGCCTGGATAGATGTGTTTGGCTCGCGCGTGGC
CAAGGGCATGGGGTCCATCATCACAGGCACCTCCAAGGGCAACAAGGACG
TGCTTATCACGTATGGCAGGTGCGAGTTAATGAGTACCTGAGCAGATGAG
TAAATGAGTAGATGGGTAGACGAGTTCAACAATGAGGTGCTCATCACGTA
TGAGAGGTGCAGGTGAATGAGTAACTGAGTGGATGAGTGCAACAAGGACG
TGCCCATCACATATGGAAGGTGCGAATCAATAAGTACACGAGTAGATGAG
TCTCCAGTGTTGCTCTGAAAGACAAAGTCTGTGAGTCTGTGTGATTCTGT
TGGTCCGTGAGTATGCTGGATACTTGCTCTAGATGCCTGCTCAAGTTCTG
GTGAGCACCTCCAAGTGCAAAAGGACGTGCTCATCACGTTTGGCAGATGC
AAGTAAATGAGTAAATGAGCAATGGAGTAGATGAAGGCAACAAGGATCTG
CTCATGGCAGGTGGGAGTCAATGAGTACACTAGTAGATGAGTACGCGTCA
GCAGTCCCCACTGTTGCTCTGAAAGACAAACTCTGTTAGTCTGTGAGTGT
GGTTGATGCTTTCTCTGCATGCCTGCTCAAAGTCTGGTGTACATGACTAA
CTTTCACTGCGATTGAACCGCAGTACTTCAAGTAATCAGCTTCTGAGTGT
ATGTGATGATGTCTGCGAGCCGATGCAGGCAGATAGATCTGAGTGGAGCG
TCGTAGGCATTTCTGTGGCAATTTATGTGATCTACTTCAACATACTGCTG
CGCCGTGATTTACACACACACACACACACATGGCGATTTGTCCGCATCCC
CGTAGCGGCAGCAACTGCTTGGTTTTTTGTTGAAGGTGCTGCATGTAATG
ACTTGCGCTGTCTCCAAGCCATGCTCAGCCACGTGCCTGCGCCGCCCACA
CTGCTGCAGCTTTGCCATATTTCTGGTCAGCCTCGGTCTGCTGGGGCTCA
GCCTGGTCGTCGGGCAGGAGTTCTCAAAACTGGTCCGGACCGGGCAGGTC
AGTCATGTAACATGTTGTCAGTACTAATACTAACTGTGGTCTTTGTTCAT
CCCTAGCCATGCAAGTCGGTGTTGGTCCAATGGGGTGGGGTACTTTTAGA
ATTATGGGGGGGGAGGGGGGGGGGGCATGCACATCAAGAGATGCGTAATA
AACTCTGCCCCAATGGCACAACTTGACCATCGCACCTGGCCTTGAGGGCG
ATGCATGTTGTCAGCGATGAGGGTGGTCATCATGTCGCCACGCAGCCGGT
GCTGATCAACTGTTGTGTACCTTTCCTGTGGGGGGGGTGGGGGTGGCGCG
CCAAAACATGTGTTTTTGGAATGCATCCTGCGCTAGTAGTAGAGCAACAA
CAACTTTGCAACAGCTGCTCGATGTGACTGTCACCCCACAATCGCCCTAG
CTGGGTCAGATCTACTATGGCCGCGCTCAGTATTTTGAAAAAGAGTTAGG
TAATAGGGTTGGCTTGGCAGCAACTGCGCCATGTTGAAGTCATCGGCAGT
AGGGTAAGGGTTACTCTAACCATACCCCTAAGTCCCAGTGCAAGGGTCAG
GTGCTCATAGCTCAGTAATTGAAACACCAGCAGCGATCGCCTCGCAGCAG
CCCCCGTCTCCACCCCTGATGTTGAGTAGCACGATCATGTGCCCTGCCTT
GGTGTGGCTATGTAGCACGCGTTTCTGCCCCCAGCCTGCTCCGAGCTGAC
CAGTATGGTCGCCTATTTGGCTTGATGGTCAGCATACGCCTTTAGGCACA
GCTGCCGCACCGGATTCTGATTTATCACCTCGCTTTCGTGCTGTCGCCTA
CACTGCCTGCGTCGCTGCCTCTGGTCCTGTAACGCGTCCTTGTCAGATCA
TTGGCGACGCCAATGGTCCGGCGCCGGCGTCGCTGCCTGCACCCATACGT
GTGTCTGATTCATCACCTCCATTCCTACACTGCCTTCGCGCTGCCGCTGT
TCCCGTTACTTGCATGTACACCCGCAAATGCTGCGTCTGACTCCTTACCT
CACTTTCCACTGCGCCGCCTGCGTTGCCAACACTACCTCTGCTGCTGCCA
CCGGCACAACTGCTGTTGCGTCCGTGTCAGATCATTGGCAACTCCGATGG
CCCAACGATGGCGGCGTCACTGCATGCACCCGTACATGTGTCTGATTCAT
TACCGCGCTTTCATGCTGCCGCCCACACTGCCTCCGCCGCTGCCTCTGGT
CCTGCTACTGGTACTTGTAAGTACACCCGGCGGTATCACTGCATACACCC
ATATCTGTGTCTGATTGGCTACCTCGCTTTCGTGCTGCCGCCCGCACTGC
CTCCGCCGCTGCCGCTGGTCCTGCTACTGGTGTGTACTGCGCCGCTGACA
CCGCCTCCGCTGCTGCCGCCGGCACCACTACTGTCGCGTGCTTGTCAGAT
CATTGGCGACTCCGATGGTGCCACAACGGCATCGCTGCATGCACCTGCAC
CTGTGTCTGATTCATTACCTCGCTTTCATGCTGCCGCCCACACTCCCTCC
GCCGCTGCCTCTGGTCCTGCTACTGGTCAGATCATTGGCGACTCCGATGA
TTCGGCGGCGGCGGCGCTGCCGGCGCACCTGCGCTCAAAGAGCCGCAGCG
GGTCCGGGCACAGCTGGCACGCGCGCAGCAGCAGCGGCGCACGCTCGCAC
AGCGGCTCCGTCGACGACGAGGACGGCATTGAGTTGCCAGAGGCAACCGC
TCTGAGAAGCAGTGCCTGATCTGAGTCACCACAATGTGCTGTATGTTGTA
AATAAATCAAGCACAAGCGACCGCTCTGAGAGACAGTGCCTGACCTTGTC
AGCGCGATCTGCTATACAGCACCTACGTTGTAAATGAATGAGACACAAGA
G

Coding sequence (CDS) from alignment at Contig_289:231..7381+

>mRNA_18846 ID=mRNA_18846|Name=jgi.p|Trimin1|354609|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=858bp|location=Sequence derived from alignment at Contig_289:231..7381+ (Tribonema minus UTEX_B_3156 )
ATGGTTTTTGGCTACGTGCGCCGCTATGGCGACCACCTGCCAAGGCACCG
CTTCGTGGTCATGATCCTCGGCATCAGCTGCCTGTACGAAATCGCCCTCA
CGGTGCTAGACTACCAGATGAAAGTCATGGGGGTGGCCAAATTTCGGGCA
GCGGCGCTGCGTGGAGAGGGGGGGGGGTCGGCTGCCTCTGAAAACTTTGC
GGCGCTGATGGGGCGGTTCGGCCAGGCGACCAACGGTCTGTCGCTGCTGC
TGAGCCTTCTGGGGACGAGCCTGATCGTGCGGAAGCTGGGGCTACCATTC
ACGCTGACGGTGTTTCCAGTGCTGCTGGTGCTGGCCATTGTGGTGAGCTA
CTTCCACCCCAGCCTCTGGGTGCTGTTTGTGGCGGTGAGCATGCTCAAGG
GGCTCACCTACGCGCTCAACGAGCCGTGCAAGGAGATGCTCTACATGGTC
ACCAGCGACAGCATCAAGTTTAAGGCGAAAGCCTGGATAGATGTGTTTGG
CTCGCGCGTGGCCAAGGGCATGGGGTCCATCATCACAGGCACCTCCAAGG
GCAACAAGGACGTGCTTATCACGTATGGCAGCTTTGCCATATTTCTGGTC
AGCCTCGGTCTGCTGGGGCTCAGCCTGGTCGTCGGGCAGGAGTTCTCAAA
ACTGGTCCGGACCGGGCAGATCATTGGCGACTCCGATGATTCGGCGGCGG
CGGCGCTGCCGGCGCACCTGCGCTCAAAGAGCCGCAGCGGGTCCGGGCAC
AGCTGGCACGCGCGCAGCAGCAGCGGCGCACGCTCGCACAGCGGCTCCGT
CGACGACGAGGACGGCATTGAGTTGCCAGAGGCAACCGCTCTGAGAAGCA
GTGCCTGA