mRNA_18833 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|182089
Unique NamemRNA_18833
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|182089 vs. uniprot
Match: A0A835Z5R0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R0_9STRA)

HSP 1 Score: 483 bits (1242), Expect = 3.210e-168
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1 
Query:    1 LPHTLRELDLSAACIQSGPLPPHLTSLSTSQDSGEPIGDLPITLERLAVNAAFEQRLGHLPACLKVITSDLDDDVEFDQLFGELPPQLQVLDLISFSEFNQHLDALPCHLLKLTLGCGSDQPLGTLPDTLEELLFYDGFPGSIFNXXXXXXXXXXXXXRLSXXXXXXXXXXXXXXEYLECMVSQPLAPLPCSLQHLLIWNSAYHHDLGALPPSLVELRILPAVPGEDGAYQHRLQPIHPSLKAVAISRDYAYLDDLAGVKLAHNDMRH 804
            LPHTLRELDLSAACIQSGPLPPHLTSLSTSQDSGEPIGDLPITLERLAVNAAFEQRLGHLPACLKVITSDLDDDVEFDQLFGELPPQLQVLDLISFSEFNQHLDALPCHLLKLTLGCGSDQPLGTLPDTLEELLFYDGFPGSIFNXXXXXXXXXXXXXRLSXXXXXXXXXXXXXXEYLECMVSQPLAPLPCSLQHLLIWNSAYHHDLGALPPSLVELRILPAVPGEDGAYQHRLQPIHPSLKAVAISRDYAYLDDLAGVKLAHNDMRH
Sbjct:  210 LPHTLRELDLSAACIQSGPLPPHLTSLSTSQDSGEPIGDLPITLERLAVNAAFEQRLGHLPACLKVITSDLDDDVEFDQLFGELPPQLQVLDLISFSEFNQHLDALPCHLLKLTLGCGSDQPLGTLPDTLEELLFYDGFPGSIFNXXXXXXXXXXXXXRLSXXXXXXXXXXXXXXEYLECMVSQPLAPLPCSLQHLLIWNSAYHHDLGALPPSLVELRILPAVPGEDGAYQHRLQPIHPSLKAVAISRDYAYLDDLAGVKLAHNDMRH 477
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BLAST of jgi.p|Trimin1|182089 vs. uniprot
Match: A0A835Z7I5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I5_9STRA)

HSP 1 Score: 269 bits (687), Expect = 7.260e-87
Identity = 180/271 (66.42%), Postives = 203/271 (74.91%), Query Frame = 1 
Query:    1 LPHTLRELDLSAACIQS--GPLPPHLTSLSTSQDSGEPIGDLPITLERLAVNAAFEQRLGHLPACL-KVITSDLDDD-VEFDQLFGELPPQLQVLDLISFSEFNQHLDALPCHLLKLTLGCGSDQPLGTLPDTLEELLFYDGFPGSIFNXXXXXXXXXXXXXRLSXXXXXXXXXXXXXXEYLECM-VSQPLAPLPCSLQHLLIWNSAYHHDLGALPPSLVELRILPAVPGEDGAYQHRLQPIHPSLKAVAISRDYAYLDDLAGVKLAHNDM 798
            LPHTLRELD+S   ++   GPLPPHLTSLS S  S   +G+LP TLE+L ++AA+   LG LPA L ++ TSD  +D  EFDQ FGELP  LQVLDL+ F  FN  L ALP HL+ LTLGC  +Q LG LPDTLE L+FYDG   SIF+XXXXXXXXXXXXX   XXXXXXXXXXXXXX YLEC+  +  LAPLP +LQHLLIWN+A          SLVELRI PA PGE GAY HRLQPIHP+LKAVAISRDYAYLDDLAGV+LAHN M
Sbjct:    7 LPHTLRELDMSGTFMEPPPGPLPPHLTSLSMSNGSDLALGELPFTLEKLHMSAAYNXXLGPLPASLVEITTSDRSEDGAEFDQSFGELPRGLQVLDLLEFHAFNHDLGALPAHLVMLTLGCQFNQHLGVLPDTLEVLVFYDGDDDSIFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLECVEYNHSLAPLPLTLQHLLIWNAAXXXXXXXXXXSLVELRIHPAEPGEQGAYTHRLQPIHPALKAVAISRDYAYLDDLAGVELAHNGM 277
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|182089 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z5R0_9STRA3.210e-168100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z7I5_9STRA7.260e-8766.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_352contigContig_352:16735..17541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|182089|e_gw1.352.2.1
Hectar predicted targeting categoryother localisation
TranscriptId182411
TrackFilteredModels1
ProteinId182089
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182089gene_18833Tribonema minus UTEX_B_3156 geneContig_352 16735..17541 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18833_1exon_18833_1Tribonema minus UTEX_B_3156 exonContig_352 16735..17541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18833CDS_18833Tribonema minus UTEX_B_3156 CDSContig_352 16735..17541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182089Trimin1|182089|e_gw1.352.2.1Tribonema minus UTEX_B_3156 polypeptideContig_352 16735..17541 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18833 ID=mRNA_18833|Name=jgi.p|Trimin1|182089|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_352:16735..17541- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCCCCACACCCTGCGTGAGCTAGATCTTTCGGCAGCGTGCATACAATC
CGGCCCGCTACCCCCTCACCTCACATCCCTCTCCACCAGCCAAGACAGCG
GCGAGCCCATCGGGGATTTGCCGATCACACTCGAGAGATTGGCCGTGAAC
GCCGCCTTTGAACAGCGTCTGGGCCACCTACCCGCATGCCTGAAGGTGAT
TACGTCAGACTTGGACGACGATGTAGAATTTGACCAGTTATTCGGTGAGC
TCCCGCCACAGCTGCAGGTTTTAGACCTCATCAGCTTCAGCGAGTTCAAC
CAGCATCTTGATGCGCTGCCTTGTCATCTGCTTAAGCTGACTCTCGGTTG
CGGTTCCGATCAGCCTCTTGGCACGTTGCCAGACACACTTGAGGAGCTGT
TGTTCTATGACGGCTTCCCTGGCTCCATTTTCAACCACCCGCTCGGCACT
CTGCCGAAGTCCCTGCGCAAGCTTCGTCTGAGCGACGCCTTTGACCACCC
CCTCGGCCTGCTGCCGTCCAAACTCGAGTATCTCGAGTGCATGGTCAGTC
AACCCCTAGCGCCTCTACCGTGCTCCTTACAGCACCTGCTCATATGGAAC
TCTGCTTACCATCATGACCTCGGTGCACTCCCTCCAAGCCTGGTGGAGTT
GCGCATCCTGCCGGCAGTGCCCGGTGAGGATGGCGCGTACCAGCACAGAC
TCCAGCCGATCCACCCCTCTCTCAAGGCTGTGGCAATATCCAGGGATTAC
GCATACCTCGACGATCTTGCCGGTGTAAAACTTGCGCATAATGACATGCG
GCATTAG
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protein sequence of jgi.p|Trimin1|182089

>Trimin1|182089|e_gw1.352.2.1 ID=Trimin1|182089|e_gw1.352.2.1|Name=jgi.p|Trimin1|182089|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp
LPHTLRELDLSAACIQSGPLPPHLTSLSTSQDSGEPIGDLPITLERLAVN
AAFEQRLGHLPACLKVITSDLDDDVEFDQLFGELPPQLQVLDLISFSEFN
QHLDALPCHLLKLTLGCGSDQPLGTLPDTLEELLFYDGFPGSIFNHPLGT
LPKSLRKLRLSDAFDHPLGLLPSKLEYLECMVSQPLAPLPCSLQHLLIWN
SAYHHDLGALPPSLVELRILPAVPGEDGAYQHRLQPIHPSLKAVAISRDY
AYLDDLAGVKLAHNDMRH*
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mRNA from alignment at Contig_352:16735..17541-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18833 ID=mRNA_18833|Name=jgi.p|Trimin1|182089|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_352:16735..17541- (Tribonema minus UTEX_B_3156 )
CTGCCCCACACCCTGCGTGAGCTAGATCTTTCGGCAGCGTGCATACAATC
CGGCCCGCTACCCCCTCACCTCACATCCCTCTCCACCAGCCAAGACAGCG
GCGAGCCCATCGGGGATTTGCCGATCACACTCGAGAGATTGGCCGTGAAC
GCCGCCTTTGAACAGCGTCTGGGCCACCTACCCGCATGCCTGAAGGTGAT
TACGTCAGACTTGGACGACGATGTAGAATTTGACCAGTTATTCGGTGAGC
TCCCGCCACAGCTGCAGGTTTTAGACCTCATCAGCTTCAGCGAGTTCAAC
CAGCATCTTGATGCGCTGCCTTGTCATCTGCTTAAGCTGACTCTCGGTTG
CGGTTCCGATCAGCCTCTTGGCACGTTGCCAGACACACTTGAGGAGCTGT
TGTTCTATGACGGCTTCCCTGGCTCCATTTTCAACCACCCGCTCGGCACT
CTGCCGAAGTCCCTGCGCAAGCTTCGTCTGAGCGACGCCTTTGACCACCC
CCTCGGCCTGCTGCCGTCCAAACTCGAGTATCTCGAGTGCATGGTCAGTC
AACCCCTAGCGCCTCTACCGTGCTCCTTACAGCACCTGCTCATATGGAAC
TCTGCTTACCATCATGACCTCGGTGCACTCCCTCCAAGCCTGGTGGAGTT
GCGCATCCTGCCGGCAGTGCCCGGTGAGGATGGCGCGTACCAGCACAGAC
TCCAGCCGATCCACCCCTCTCTCAAGGCTGTGGCAATATCCAGGGATTAC
GCATACCTCGACGATCTTGCCGGTGTAAAACTTGCGCATAATGACATGCG
GCATTAG
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Coding sequence (CDS) from alignment at Contig_352:16735..17541-

>mRNA_18833 ID=mRNA_18833|Name=jgi.p|Trimin1|182089|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_352:16735..17541- (Tribonema minus UTEX_B_3156 )
CTGCCCCACACCCTGCGTGAGCTAGATCTTTCGGCAGCGTGCATACAATC
CGGCCCGCTACCCCCTCACCTCACATCCCTCTCCACCAGCCAAGACAGCG
GCGAGCCCATCGGGGATTTGCCGATCACACTCGAGAGATTGGCCGTGAAC
GCCGCCTTTGAACAGCGTCTGGGCCACCTACCCGCATGCCTGAAGGTGAT
TACGTCAGACTTGGACGACGATGTAGAATTTGACCAGTTATTCGGTGAGC
TCCCGCCACAGCTGCAGGTTTTAGACCTCATCAGCTTCAGCGAGTTCAAC
CAGCATCTTGATGCGCTGCCTTGTCATCTGCTTAAGCTGACTCTCGGTTG
CGGTTCCGATCAGCCTCTTGGCACGTTGCCAGACACACTTGAGGAGCTGT
TGTTCTATGACGGCTTCCCTGGCTCCATTTTCAACCACCCGCTCGGCACT
CTGCCGAAGTCCCTGCGCAAGCTTCGTCTGAGCGACGCCTTTGACCACCC
CCTCGGCCTGCTGCCGTCCAAACTCGAGTATCTCGAGTGCATGGTCAGTC
AACCCCTAGCGCCTCTACCGTGCTCCTTACAGCACCTGCTCATATGGAAC
TCTGCTTACCATCATGACCTCGGTGCACTCCCTCCAAGCCTGGTGGAGTT
GCGCATCCTGCCGGCAGTGCCCGGTGAGGATGGCGCGTACCAGCACAGAC
TCCAGCCGATCCACCCCTCTCTCAAGGCTGTGGCAATATCCAGGGATTAC
GCATACCTCGACGATCTTGCCGGTGTAAAACTTGCGCATAATGACATGCG
GCATTAG
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