mRNA_18826 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A836CG23_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG23_9STRA) HSP 1 Score: 275 bits (704), Expect = 2.510e-92 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2
Query: 2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ
Sbjct: 36 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 176
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: D8LQ21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ21_ECTSI) HSP 1 Score: 154 bits (390), Expect = 1.920e-44 Identity = 83/141 (58.87%), Postives = 96/141 (68.09%), Query Frame = 2
Query: 2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
LDG A +G+++LR + + A GRVLEV VGTGLNL +YRRD VS I+AVDLSP ML+QA R G++ + MD E L F FDTVVDTF LCVF DP AALREM RVC GRVLLLENSKS+ L AYQ
Sbjct: 50 LDGGWAASAIGLEELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSGIEAVDLSPGMLSQASSRSESLGMERLVKLSVMDAEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSDFGPLAAYQ 190
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A6H5K3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H3_9PHAE) HSP 1 Score: 145 bits (367), Expect = 8.430e-39 Identity = 82/141 (58.16%), Postives = 93/141 (65.96%), Query Frame = 2
Query: 2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
LDG A +G++ ++A GRVLEV VGTGLNL +YRRD VS I+AVDLSP ML+QA R G++ + MDVE L F FDTVVDTF LCVF DP AALREM RVC GRVLLLENSKS L AYQ
Sbjct: 294 LDGGWAASAIGLE-------ASATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQASSRSESLGMKRLVNLSVMDVEHLGFPSEAFDTVVDTFSLCVFSDPSAALREMARVCKPAGRVLLLENSKSNFGPLAAYQ 427
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A836BNX8_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNX8_9CHLO) HSP 1 Score: 136 bits (343), Expect = 5.130e-37 Identity = 80/162 (49.38%), Postives = 100/162 (61.73%), Query Frame = 2
Query: 2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDR-------------------VSQIDAVDLSPSMLAQAEQRGVEAGLQD--IAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
LDG + A+ LG QLRQ + + ARGRVLEVAVGTGLNLPYY D VS ++AVDLSP ML QA +R + ++ + DV L + D +FD+VVDTF LCVF DP AL+EM RV +GRVLLLE+++S+ PLL AYQ
Sbjct: 67 LDGGVAAEALGFPQLRQQLLAQARGRVLEVAVGTGLNLPYYSWDERSGAASGDEAAAAVAESRGVSSVEAVDLSPGMLDQARRRTQASPALSGRSISFRQADVTALPYGDDSFDSVVDTFSLCVFPDPGTALKEMARVVRPSGRVLLLEHTRSDNPLLAAYQ 228
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A150G4S0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G4S0_GONPE) HSP 1 Score: 128 bits (321), Expect = 3.310e-34 Identity = 82/169 (48.52%), Postives = 101/169 (59.76%), Query Frame = 2
Query: 2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYY-----RRDR------------------VSQIDAVDLSPSMLAQAEQR--GVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCA---TNGRVLLLENSKSEVPLLGAYQ 424
LDG A+ LG QLRQ + ARG VLEVAVGTGLNLPYY R++ V+ ++ VDLSP MLAQA +R EA ++ + DV L F D +FD+VVDTF LCVF DP AAL EM RV + + GRVLLLE+++S+ PLL AYQ
Sbjct: 15 LDGGAAAEALGFPQLRQELLREARGHVLEVAVGTGLNLPYYSWGPQRQEPPGQGQQKGPGQEAPAPSGVTALETVDLSPGMLAQARRRVAAAEALSSRPISFTQADVAALPFPDSSFDSVVDTFSLCVFPDPQAALNEMARVVSPRSSGGRVLLLEHARSDNPLLAAYQ 183
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A7V3UI24_9BACT (Methyltransferase domain-containing protein (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3UI24_9BACT) HSP 1 Score: 126 bits (317), Expect = 4.200e-34 Identity = 72/132 (54.55%), Postives = 88/132 (66.67%), Query Frame = 2
Query: 29 LGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
LG+ +LR+ + A GRVLE+AVGTG NL YY R QI A DLSP+MLA A +R GL ++ MD E L FRD +FDTVVD+ LC F DPVAALREM RVC +GR+LLLE+ +S LG +Q
Sbjct: 37 LGVRKLRRQLLQRASGRVLEIAVGTGKNLRYY--PRTCQITAGDLSPAMLAMARKRANRLGLS--ISFLVMDAEALAFRDQSFDTVVDSLTLCTFPDPVAALREMARVCRADGRILLLEHGRSYYEWLGRWQ 164
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A7S1J1P3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J1P3_9EUGL) HSP 1 Score: 124 bits (311), Expect = 7.410e-34 Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 2
Query: 62 STARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
S+ +G+VLEVAVGTGLNLP Y +V + A+DLSP ML +AE + G Q +MD++ L F+D TFDTVVDTF LCVF DP+ AL+EM RV NG++LLLENS+SE + AYQ
Sbjct: 1 SSVKGKVLEVAVGTGLNLPLYPWAQVLDLKAIDLSPGMLREAEGKLSLMGDQSKVELLQMDIKDLGFQDKTFDTVVDTFSLCVFDDPLRALQEMRRVIKDNGQLLLLENSRSENGAVAAYQ 121
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A7S2B2V6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2V6_9STRA) HSP 1 Score: 125 bits (314), Expect = 9.270e-34 Identity = 67/127 (52.76%), Postives = 84/127 (66.14%), Query Frame = 2
Query: 44 LRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
LR ++ A GRVLEV VGTGLNLP+Y RV+ ++ +DLS ML+ A+ + L D MDV L F +FDTVVDTF LCVF DP AL+EM RVCA +GR+LLLE+S +E PL+ YQ
Sbjct: 1 LRAMLIGKASGRVLEVGVGTGLNLPFYDTTRVTSLEGIDLSDGMLSIAQTKRKAIPLNDKVRLSRMDVSALDFPSRSFDTVVDTFSLCVFPDPQKALQEMCRVCAPDGRLLLLEHSAAENPLVALYQ 127
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A5J4XF40_9CHLO (Methyltransferase type 11 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XF40_9CHLO) HSP 1 Score: 125 bits (313), Expect = 3.310e-33 Identity = 67/141 (47.52%), Postives = 90/141 (63.83%), Query Frame = 2
Query: 2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
LD A+ GI QLRQ + S A G VLEVA+GTG+NL Y R +V ++ +D+S ML QA+ + G + + DVE L F TFD VVDTF LCVF P+ A++E+ RV G++LLLE+S+S++PLLG YQ
Sbjct: 25 LDAGAAAEAFGIPQLRQTLISAAYGNVLEVAIGTGINLRLYNRQQVQKLVGLDVSQGMLQQAQGKTHTDGQGLQVTFQQGDVECLPFGSNTFDCVVDTFSLCVFPKPLQAVKELARVLTPGGKLLLLEHSRSKLPLLGWYQ 165
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Match: A0A8J6CFI3_DIALT (Methyltransf_11 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFI3_DIALT) HSP 1 Score: 124 bits (310), Expect = 1.770e-32 Identity = 68/141 (48.23%), Postives = 87/141 (61.70%), Query Frame = 2
Query: 2 LDGSIMAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQAEQRGVEAGLQDIAAYHEMDVEQLKFRDGTFDTVVDTFGLCVFGDPVAALREMGRVCATNGRVLLLENSKSEVPLLGAYQ 424
LDG + A LG D+LR++ + A G VLEV GTGLNLP Y RV + A+D S ML A R GL + DV L F DGTFD V+DTF LCVF DP+AA+ EM RV A +G ++ +E+ +++ LLGAYQ
Sbjct: 52 LDGGLAASRLGFDELRRVACARAHGAVLEVGAGTGLNLPLYDWSRVRSLVALDASSGMLDVARARADGLGLAGKVTFARGDVAALPFDDGTFDVVLDTFSLCVFADPIAAMAEMRRVLAPSGTIIAVEHQRAD-GLLGAYQ 191 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|65607 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18826 ID=mRNA_18826|Name=jgi.p|Trimin1|65607|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=425bp|location=Sequence derived from alignment at Contig_406:414..1185- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCTAGATGGCAGCATCATGGCCCAGGGCCTTGGCATAGACCAGCTGAGACback to top protein sequence of jgi.p|Trimin1|65607 >Trimin1|65607|CE65606_14 ID=Trimin1|65607|CE65606_14|Name=jgi.p|Trimin1|65607|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp MAQGLGIDQLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSback to top mRNA from alignment at Contig_406:414..1185- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18826 ID=mRNA_18826|Name=jgi.p|Trimin1|65607|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=772bp|location=Sequence derived from alignment at Contig_406:414..1185- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_406:414..1185- >mRNA_18826 ID=mRNA_18826|Name=jgi.p|Trimin1|65607|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=409bp|location=Sequence derived from alignment at Contig_406:414..1185- (Tribonema minus UTEX_B_3156 )back to top |