mRNA_18807 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|182466
Unique NamemRNA_18807
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|182466 vs. uniprot
Match: A0A836CB88_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB88_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 5.170e-11
Identity = 79/99 (79.80%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 MAPPTLLVPAPAATLIVPPVVDAPDANSNSPPAPESPLPTVRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLAALLDEPLL 297
            MAPP+LLVPAPAA L  PPVVDAPDANS SPPAPESPLPTVRL  XXXXXXXXXXXXX         XXXXXXXXXXXXXXXXX    PLAALLDEPLL
Sbjct:    1 MAPPSLLVPAPAAILTAPPVVDAPDANSKSPPAPESPLPTVRLTGXXXXXXXXXXXXXTPPVLPDLDXXXXXXXXXXXXXXXXXTLTSPLAALLDEPLL 99
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BLAST of jgi.p|Trimin1|182466 vs. uniprot
Match: A0A836C9K5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 9.890e-8
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = -3 
Query:  713 QESAEMYQSAPAQLLSAELAQYASALVLPLRAVE 814
            QESAEMYQSAPAQLLSA LAQYASALVLPLRAVE
Sbjct:   74 QESAEMYQSAPAQLLSAALAQYASALVLPLRAVE 107
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|182466 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CB88_9STRA5.170e-1179.80Uncharacterized protein n=4 Tax=Tribonema minus Ta... [more]
A0A836C9K5_9STRA9.890e-897.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_540contigContig_540:2310..3578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|182466|e_gw1.540.4.1
Hectar predicted targeting categoryother localisation
TranscriptId182788
TrackFilteredModels1
ProteinId182466
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182466gene_18807Tribonema minus UTEX_B_3156 geneContig_540 2310..3578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182466Trimin1|182466|e_gw1.540.4.1Tribonema minus UTEX_B_3156 polypeptideContig_540 2310..3578 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18807_2exon_18807_2Tribonema minus UTEX_B_3156 exonContig_540 2310..2645 -
exon_18807_1exon_18807_1Tribonema minus UTEX_B_3156 exonContig_540 3039..3578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18807CDS_18807Tribonema minus UTEX_B_3156 CDSContig_540 3039..3578 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18807 ID=mRNA_18807|Name=jgi.p|Trimin1|182466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=876bp|location=Sequence derived from alignment at Contig_540:2310..3578- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCACCAACACTGCTTGTGCCAGCACCGGCAGCAACACTGATAGT
GCCGCCAGTTGTGGACGCCCCTGATGCCAATAGCAATTCACCACCAGCAC
CAGAGTCACCGCTGCCCACAGTCAGACTTACAGGGCCCCCGACTCCGCCT
GAGGCGCTGCCACTGCCGACAAGTACACCACCTGTGCTGCCAGACCTCGA
TGCGCCAGAGCTCAGCACCAGCTTGCCAGACATTGTGCCAGCAGCAGATG
CAACACTGACATCGCCGCTTGCCGCACTGTTGGATGAACCACTGCTGAGG
TTGATGTTGCCACCGTCGCCGCTGCTGCTGAATCCTGCAGTCAGCTGCAG
TGCGCCACCTGCACCGCTTGTGCCGCTGCCGACGGTCAGGCTCAAGGCAC
CGCCCCTGCCGCCTGTGGCACCTCCTGTAGTGATGTCAACAGCACCGCTG
TCACCTGCACCAGAAGTACCGGACCGCAGAGCAAGATTGCCGCTCACACC
GCTTGAGCCACTGTCTCCGGAGGCCAAGCTGACAGAACCTCCACCAGTGG
AGCTGCCATCGCCAGCTGTCACGCGGACACTGCCACCATCGCCGGCAGTA
CCTGTGCCTGCTCCTATGCTGACGGCACCACCACTGGCGGACACTCCTGC
CTCGATCATGACTGCACCTCCTTCACCAACAGTGCCGGACCCTACTGTCA
GGCTCAGCTCACCTCCACTGCCCGCAGTGGCAACACCAGTGCTGATGCGT
ACTGCGCCAGTTCTGCCGAGAGCAGCTGTGCCGGAGCTGACTGATACATC
TCCGCTGACTCCTGCCAAAGCAGCATTGCCAGACTGTACTGACACAGCCC
CGCTGTTGCCAGAGTTGCCGCTGCCG
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protein sequence of jgi.p|Trimin1|182466

>Trimin1|182466|e_gw1.540.4.1 ID=Trimin1|182466|e_gw1.540.4.1|Name=jgi.p|Trimin1|182466|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp
MAPPTLLVPAPAATLIVPPVVDAPDANSNSPPAPESPLPTVRLTGPPTPP
EALPLPTSTPPVLPDLDAPELSTSLPDIVPAADATLTSPLAALLDEPLLR
LMLPPSPLLLNPAVSCSAPPAPLVPLPTVRLKAPPLPPVAPPVVMSTAPL
SPAPEVPDRRARLPLTPLEPLSPEAKLTEPPPVELPSPAVTRTLPPSPAV
PVPAPMLTAPPLADTPASIMTAPPSPTVPDPTVRLSSPPLPAVATPVLMR
TAPVLPRAAVPELTDTSPLTPAKAALPDCTDTAPLLPELPLP
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mRNA from alignment at Contig_540:2310..3578-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18807 ID=mRNA_18807|Name=jgi.p|Trimin1|182466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1269bp|location=Sequence derived from alignment at Contig_540:2310..3578- (Tribonema minus UTEX_B_3156 )
ATGGCACCACCAACACTGCTTGTGCCAGCACCGGCAGCAACACTGATAGT
GCCGCCAGTTGTGGACGCCCCTGATGCCAATAGCAATTCACCACCAGCAC
CAGAGTCACCGCTGCCCACAGTCAGACTTACAGGGCCCCCGACTCCGCCT
GAGGCGCTGCCACTGCCGACAAGTACACCACCTGTGCTGCCAGACCTCGA
TGCGCCAGAGCTCAGCACCAGCTTGCCAGACATTGTGCCAGCAGCAGATG
CAACACTGACATCGCCGCTTGCCGCACTGTTGGATGAACCACTGCTGAGG
TTGATGTTGCCACCGTCGCCGCTGCTGCTGAATCCTGCAGTCAGCTGCAG
TGCGCCACCTGCACCGCTTGTGCCGCTGCCGACGGTCAGGCTCAAGGCAC
CGCCCCTGCCGCCTGTGGCACCTCCTGTAGTGATGTCAACAGCACCGCTG
TCACCTGCACCAGAAGTACCGGACCGCAGAGCAAGATTGCCGCTCACACC
GCTTGAGCCACTGTCTCCGGAGGCCAAGCTGACAGAACCTGTTGTTGTTG
CTGAACCGTAAGCACTGCTGATTGATAGAGCTCCACTTGAGATGCCAGAG
CCTGTCACCAGCCTTACTGCACCTCCAGCACCGCTCGTGCCGCTTCCTGC
AGCAATGCTGACAGCACCACCGAGTGTGGACTGGCCCGCTTGTACAACAA
CACTTCCACCAGCACCTGATGTTCCTGAGCCAACAACAAGGCTCAACTGC
CCGCCGGCCCCTTCACTGGCTGTGCCGCTGCCAATCAAGACAGAGCCACT
TGGACCCGATGATGATGTCCCAGAGCTAAACACAAGGTCGCCACTCGAGC
CAGATGCACTGCTGAATCCTGAAACGAGGCTGACTACTCCGCTGTTACCA
GAGGATGCTGCACCACTTGCAAAGGACAAAGAGCCACCAGTGGAGCTGCC
ATCGCCAGCTGTCACGCGGACACTGCCACCATCGCCGGCAGTACCTGTGC
CTGCTCCTATGCTGACGGCACCACCACTGGCGGACACTCCTGCCTCGATC
ATGACTGCACCTCCTTCACCAACAGTGCCGGACCCTACTGTCAGGCTCAG
CTCACCTCCACTGCCCGCAGTGGCAACACCAGTGCTGATGCGTACTGCGC
CAGTTCTGCCGAGAGCAGCTGTGCCGGAGCTGACTGATACATCTCCGCTG
ACTCCTGCCAAAGCAGCATTGCCAGACTGTACTGACACAGCCCCGCTGTT
GCCAGAGTTGCCGCTGCCG
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Coding sequence (CDS) from alignment at Contig_540:2310..3578-

>mRNA_18807 ID=mRNA_18807|Name=jgi.p|Trimin1|182466|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_540:2310..3578- (Tribonema minus UTEX_B_3156 )
ATGGCACCACCAACACTGCTTGTGCCAGCACCGGCAGCAACACTGATAGT
GCCGCCAGTTGTGGACGCCCCTGATGCCAATAGCAATTCACCACCAGCAC
CAGAGTCACCGCTGCCCACAGTCAGACTTACAGGGCCCCCGACTCCGCCT
GAGGCGCTGCCACTGCCGACAAGTACACCACCTGTGCTGCCAGACCTCGA
TGCGCCAGAGCTCAGCACCAGCTTGCCAGACATTGTGCCAGCAGCAGATG
CAACACTGACATCGCCGCTTGCCGCACTGTTGGATGAACCACTGCTGAGG
TTGATGTTGCCACCGTCGCCGCTGCTGCTGAATCCTGCAGTCAGCTGCAG
TGCGCCACCTGCACCGCTTGTGCCGCTGCCGACGGTCAGGCTCAAGGCAC
CGCCCCTGCCGCCTGTGGCACCTCCTGTAGTGATGTCAACAGCACCGCTG
TCACCTGCACCAGAAGTACCGGACCGCAGAGCAAGATTGCCGCTCACACC
GCTTGAGCCACTGTCTCCGGAGGCCAAGCTGACAGAACCTCCACCAGTGG
AGCTGCCATCGCCAGCTGTCACGCGGACACTGCCACCATCGCCGGCAGTA
CCTGTGCCTGCTCCTATGCTGACGGCACCACCACTGGCGGACACTCCTGC
CTCGATCATGACTGCACCTCCTTCACCAACAGTGCCGGACCCTACTGTCA
GGCTCAGCTCACCTCCACTGCCCGCAGTGGCAACACCAGTGCTGATGCGT
ACTGCGCCAGTTCTGCCGAGAGCAGCTGTGCCGGAGCTGACTGATACATC
TCCGCTGACTCCTGCCAAAGCAGCATTGCCAGACTGTACTGACACAGCCC
CGCTGTTGCCAGAGTTGCCGCTGCCG
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