mRNA_18765 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A835Z6U4_9STRA (zf-met2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U4_9STRA) HSP 1 Score: 191 bits (485), Expect = 1.050e-58 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1
Query: 1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACFGADVAAAEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAVPAATAAMRNGAFGECVMVAAV 468
MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACFGADVAAAEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAVPAATAAMRNGAFGECVMVAAV
Sbjct: 1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACFGADVAAAEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAVPAATAAMRNGAFGECVMVAAV 156
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A7S3DVD1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DVD1_9STRA) HSP 1 Score: 102 bits (254), Expect = 8.170e-24 Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACF-GADVAAAEAEA 249
MPES+KA ++R QK NR GIGDENGR+VR K+P +M KCTVC E+ +TKTNTEL HA SKHGST+E CF GA AAE A
Sbjct: 32 MPESNKAAKKRIQKANRAAGIGDENGRLVREKEPPKMSKCTVCQQELVITKTNTELTAHATSKHGSTIEVCFPGAQETAAELRA 115
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A7S4N5C1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5C1_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 3.120e-22 Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACF-GADVAAAE 240
MPES+KA +RR QK NR GIGDE GR+VRVKD +M CT+C E+++TKTNTEL HA SKHG T++ CF GA AAE
Sbjct: 1 MPESNKAAKRRIQKANRKAGIGDETGRLVRVKDAPKMATCTICQFEMKITKTNTELTAHATSKHGKTLDECFPGAAKIAAE 81
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A7S1UT83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UT83_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 8.640e-22 Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1
Query: 1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACF-GADVAAAEAEA 249
MP S+ ++R QK NR GIGDE+GRIVRVKDP ++ KCT+C LE+ +TKTNTEL HA SKHG T++ CF GA AAE A
Sbjct: 1 MPASNATAKKRQQKQNRALGIGDESGRIVRVKDPPKISKCTICQLEMTITKTNTELTAHATSKHGKTLDECFPGAATVAAELVA 84
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A6U3SV84_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SV84_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 4.680e-21 Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 1 MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACF-GADVAAAEAEA 249
MPES+ A ++R K NR GIGDE GRIV+ KDP +M C+VC E+++TKTNTEL+ H+ESKHGST++ACF GA AAE A
Sbjct: 1 MPESNAAAKKRQFKANRAAGIGDETGRIVQQKDPPKMMNCSVCQHEMKITKTNTELKMHSESKHGSTLDACFPGAAAIAAELAA 84
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A1E7FA32_9STRA (zf-met2 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FA32_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 5.310e-14 Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 1 MPESHKAERRRAQKVNRDNGIGDENGRIV-RVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACF-GADVAAAEAEA 249
MPES+K R K NR G+GDE GR+ RVK M C +C E+++TKTNTEL+ HAE KHG T+E CF GA+ A E A
Sbjct: 1 MPESNKGANARRLKANRAAGVGDETGRLPSRVKTEAIMICCEICKSELKVTKTNTELKLHAEGKHGKTLEECFVGAEGHAKEINA 85
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A448ZCJ3_9STRA (zf-met2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCJ3_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.120e-13 Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 1 MPESHKAERRRAQKVNRDNGIGDENGRI-VRVKDPVRMGKCTVCNLEVRMTKTNTELRTHAESKHGSTMEACFGADVAAAEA 243
MP+S+K K NR GIGDE GR+ RVK +M C VC E++ TKTNTE++ HAESKHG T+E CF A A+A
Sbjct: 1 MPQSNKGLNAARLKANRAAGIGDEMGRLPARVKAEAKMICCLVCKAELKCTKTNTEMKLHAESKHGKTLEECFPGATAEAKA 82
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Match: A0A835Z816_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z816_9STRA) HSP 1 Score: 1213 bits (3139), Expect = 0.000e+0 Identity = 1040/1040 (100.00%), Postives = 1040/1040 (100.00%), Query Frame = 1
Query: 1 MARSGWTVIAVATKETQAGQPPRSKSNTRQREHQQQASRPVLSSTSASNSAARQCDSDARYFSQDTGCYYCSQYFDXXXXXXXXXXXXXXXXXXAPQGDAELPPKQHRXXXXXVSIAEPHQHKLEAFCDRRRSSSSSGVALEEGVLMDRRPPLIVELHPCHWKIRTPSADFAATVHPRRAAAGALQYGRGARCVLLALETRRLPRELLWAAPEAAHCAGGRGGIEVELRDLRGAPPPQRXXXXXXXXXXXFDAAHETWRDGFGAAAEAEGEGCGRGDVRHLEARLSNGRLLLGLRRCIAAAMRAGKGGKSAQPFQGALDGSSDVLPALDKLFGQDAAAAAAQLXXXXXXXXXXXXXXXXXXXXXSPAATAAEWSARLSAAEDAAQAIAARRRAWHYAALEHAAALHVEDGAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAEEDGGELFALTAAERAAMPPAVLARLRAQHALVLAAFRSPADAAAXXXXXXPLPSAATAASPHVDSLDATGAXXXXXVGAVVKAEHEQPFSTGASAAPNMERRRASLRAXXXXXXXXGPLAGXXXXXXXXXXXXXXALGRGRLRAAALFADAAHAVEAHAACAAAASFALLVQLQAVKRAAPVEQAALRCGAGRALDGAGVRAGAARPPMGPGLLPSRVVNAHRIARTLPXXXXXXXXXEAAIRGGDAALPMPRWVPDAAAEGGFRAEIERPDGLPDDEATEAAVVQEXXXXXXXXXERRASLELEQQRVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVEQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVHTPRHRYEAQSHMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQAAQLAALRXXXXXXXXXXXXXXXXXXXGGFAPPMGSPPGQASLQXXXXXXQGVDAGGNPLQHASAALASVGSANVLPNGGLNGAGGGWL 3120
MARSGWTVIAVATKETQAGQPPRSKSNTRQREHQQQASRPVLSSTSASNSAARQCDSDARYFSQDTGCYYCSQYFDXXXXXXXXXXXXXXXXXXAPQGDAELPPKQHRXXXXXVSIAEPHQHKLEAFCDRRRSSSSSGVALEEGVLMDRRPPLIVELHPCHWKIRTPSADFAATVHPRRAAAGALQYGRGARCVLLALETRRLPRELLWAAPEAAHCAGGRGGIEVELRDLRGAPPPQRXXXXXXXXXXXFDAAHETWRDGFGAAAEAEGEGCGRGDVRHLEARLSNGRLLLGLRRCIAAAMRAGKGGKSAQPFQGALDGSSDVLPALDKLFGQDAAAAAAQLXXXXXXXXXXXXXXXXXXXXXSPAATAAEWSARLSAAEDAAQAIAARRRAWHYAALEHAAALHVEDGAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAEEDGGELFALTAAERAAMPPAVLARLRAQHALVLAAFRSPADAAAXXXXXXPLPSAATAASPHVDSLDATGAXXXXXVGAVVKAEHEQPFSTGASAAPNMERRRASLRAXXXXXXXXGPLAGXXXXXXXXXXXXXXALGRGRLRAAALFADAAHAVEAHAACAAAASFALLVQLQAVKRAAPVEQAALRCGAGRALDGAGVRAGAARPPMGPGLLPSRVVNAHRIARTLPXXXXXXXXXEAAIRGGDAALPMPRWVPDAAAEGGFRAEIERPDGLPDDEATEAAVVQEXXXXXXXXXERRASLELEQQRVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVEQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVHTPRHRYEAQSHMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQAAQLAALRXXXXXXXXXXXXXXXXXXXGGFAPPMGSPPGQASLQXXXXXXQGVDAGGNPLQHASAALASVGSANVLPNGGLNGAGGGWL
Sbjct: 1 MARSGWTVIAVATKETQAGQPPRSKSNTRQREHQQQASRPVLSSTSASNSAARQCDSDARYFSQDTGCYYCSQYFDXXXXXXXXXXXXXXXXXXAPQGDAELPPKQHRXXXXXVSIAEPHQHKLEAFCDRRRSSSSSGVALEEGVLMDRRPPLIVELHPCHWKIRTPSADFAATVHPRRAAAGALQYGRGARCVLLALETRRLPRELLWAAPEAAHCAGGRGGIEVELRDLRGAPPPQRXXXXXXXXXXXFDAAHETWRDGFGAAAEAEGEGCGRGDVRHLEARLSNGRLLLGLRRCIAAAMRAGKGGKSAQPFQGALDGSSDVLPALDKLFGQDAAAAAAQLXXXXXXXXXXXXXXXXXXXXXSPAATAAEWSARLSAAEDAAQAIAARRRAWHYAALEHAAALHVEDGAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAEEDGGELFALTAAERAAMPPAVLARLRAQHALVLAAFRSPADAAAXXXXXXPLPSAATAASPHVDSLDATGAXXXXXVGAVVKAEHEQPFSTGASAAPNMERRRASLRAXXXXXXXXGPLAGXXXXXXXXXXXXXXALGRGRLRAAALFADAAHAVEAHAACAAAASFALLVQLQAVKRAAPVEQAALRCGAGRALDGAGVRAGAARPPMGPGLLPSRVVNAHRIARTLPXXXXXXXXXEAAIRGGDAALPMPRWVPDAAAEGGFRAEIERPDGLPDDEATEAAVVQEXXXXXXXXXERRASLELEQQRVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVEQQAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVHTPRHRYEAQSHMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQAAQLAALRXXXXXXXXXXXXXXXXXXXGGFAPPMGSPPGQASLQXXXXXXQGVDAGGNPLQHASAALASVGSANVLPNGGLNGAGGGWL 1040 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
BLAST of jgi.p|Trimin1|354618 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18765 ID=mRNA_18765|Name=jgi.p|Trimin1|354618|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=671bp|location=Sequence derived from alignment at Contig_294:16388..19478- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCTGAGAGCCACAAAGCAGAGAGGAGGCGGGCGCAGAAGGTCAACCGback to top protein sequence of jgi.p|Trimin1|354618 >Trimin1|354618|estExt_Genemark1.C_Ctg_2940002 ID=Trimin1|354618|estExt_Genemark1.C_Ctg_2940002|Name=jgi.p|Trimin1|354618|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp MPESHKAERRRAQKVNRDNGIGDENGRIVRVKDPVRMGKCTVCNLEVRMTback to top mRNA from alignment at Contig_294:16388..19478- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18765 ID=mRNA_18765|Name=jgi.p|Trimin1|354618|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3091bp|location=Sequence derived from alignment at Contig_294:16388..19478- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_294:16388..19478- >mRNA_18765 ID=mRNA_18765|Name=jgi.p|Trimin1|354618|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_294:16388..19478- (Tribonema minus UTEX_B_3156 )back to top |