mRNA_18707 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128816
Unique NamemRNA_18707
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|128816 vs. uniprot
Match: A0A835YUD8_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.530e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 SFSLSTVSQTSTVDADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 204
            SFSLSTVSQTSTVDADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE
Sbjct:    1 SFSLSTVSQTSTVDADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 68
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BLAST of jgi.p|Trimin1|128816 vs. uniprot
Match: A0A835YH74_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH74_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.420e-33
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:   40 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 204
            DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE
Sbjct:    1 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 55
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BLAST of jgi.p|Trimin1|128816 vs. uniprot
Match: A0A6U3W0M3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3W0M3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.190e-20
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:   52 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 204
            S D  LP+AHTCFFS+NLPRYS D +MAE+L++AMYNCIEMDADFRLAD+E
Sbjct:  160 SPDTYLPKAHTCFFSLNLPRYSSDAIMAEKLRFAMYNCIEMDADFRLADSE 210
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BLAST of jgi.p|Trimin1|128816 vs. uniprot
Match: A0A7S2R3W8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3W8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.010e-19
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   58 DQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 204
            D  LP+AHTCFFS+NLP+YS D +MA RL+YAMYNCIEMDADFRLA+ E
Sbjct:   85 DVFLPKAHTCFFSLNLPKYSADEIMATRLRYAMYNCIEMDADFRLAENE 133
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BLAST of jgi.p|Trimin1|128816 vs. uniprot
Match: A0A6H5JS79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS79_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.920e-18
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   58 DQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 204
            D+ LP+AHTCFFSINLPRYS D +MA +L Y MYNCIEMDADFRLAD E
Sbjct: 4533 DRFLPKAHTCFFSINLPRYSSDEIMANKLSYTMYNCIEMDADFRLADNE 4581
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BLAST of jgi.p|Trimin1|128816 vs. uniprot
Match: F0YIA3_AURAN (HECT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIA3_AURAN)

HSP 1 Score: 80.5 bits (197), Expect = 4.030e-16
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   52 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 204
            S ++ LP+AHTCFFS+NLP+YS   VM  +L+YAM+NCIEMDADF+L DTE
Sbjct:  439 SPNKYLPKAHTCFFSLNLPKYSSHEVMVSKLRYAMFNCIEMDADFKLTDTE 489
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BLAST of jgi.p|Trimin1|128816 vs. uniprot
Match: A0A2D4CIK0_PYTIN (HECT E3 ubiquitin ligase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIK0_PYTIN)

HSP 1 Score: 79.3 bits (194), Expect = 9.840e-16
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   52 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 204
            + DQQLP++HTCFF++ LPRYS D +  ++L YA++NC+EMD DFRLADTE
Sbjct:  386 TADQQLPKSHTCFFALQLPRYSTDEICRKQLLYAIHNCVEMDGDFRLADTE 436
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BLAST of jgi.p|Trimin1|128816 vs. uniprot
Match: A0A2D4CHI1_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHI1_PYTIN)

HSP 1 Score: 79.3 bits (194), Expect = 1.080e-15
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   52 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 204
            + DQQLP++HTCFF++ LPRYS D +  ++L YA++NC+EMD DFRLADTE
Sbjct:  912 TADQQLPKSHTCFFALQLPRYSTDEICRKQLLYAIHNCVEMDGDFRLADTE 962
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BLAST of jgi.p|Trimin1|128816 vs. uniprot
Match: A0A2D4CHZ9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHZ9_PYTIN)

HSP 1 Score: 79.3 bits (194), Expect = 1.080e-15
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   52 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 204
            + DQQLP++HTCFF++ LPRYS D +  ++L YA++NC+EMD DFRLADTE
Sbjct: 1153 TADQQLPKSHTCFFALQLPRYSTDEICRKQLLYAIHNCVEMDGDFRLADTE 1203
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BLAST of jgi.p|Trimin1|128816 vs. uniprot
Match: W2PWJ9_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PWJ9_PHYPN)

HSP 1 Score: 78.6 bits (192), Expect = 2.030e-15
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   55 VDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 204
            +D Q+P++HTCFF++ LPRYS D++  ERL YA+ NC+EMD DFRLADTE
Sbjct: 4492 MDSQMPKSHTCFFALQLPRYSSDDICRERLLYAVRNCVEMDGDFRLADTE 4541
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128816 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUD8_9STRA2.530e-41100.00HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835YH74_9STRA1.420e-33100.00HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6U3W0M3_9STRA3.190e-2076.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2R3W8_9STRA1.010e-1975.51Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5JS79_9PHAE2.920e-1877.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YIA3_AURAN4.030e-1666.67HECT domain-containing protein n=1 Tax=Aureococcus... [more]
A0A2D4CIK0_PYTIN9.840e-1662.75HECT E3 ubiquitin ligase, putative n=1 Tax=Pythium... [more]
A0A2D4CHI1_PYTIN1.080e-1562.75Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A2D4CHZ9_PYTIN1.080e-1562.75Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W2PWJ9_PHYPN2.030e-1564.00Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_418contigContig_418:270..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128816|gw1.418.1.1
BRITEko00000,ko01000,ko04121
KEGG koko:K12233
EC2.3.2.26
Descriptionguanyl-nucleotide exchange factor activity
COG categoryDZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Evalue6.61e-17
Seed ortholog44056.XP_009040095.1
Hectar predicted targeting categoryother localisation
TranscriptId129138
TrackFilteredModels1
ProteinId128816
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128816gene_18707Tribonema minus UTEX_B_3156 geneContig_418 270..473 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18707_1exon_18707_1Tribonema minus UTEX_B_3156 exonContig_418 270..473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18707CDS_18707Tribonema minus UTEX_B_3156 CDSContig_418 270..473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128816Trimin1|128816|gw1.418.1.1Tribonema minus UTEX_B_3156 polypeptideContig_418 270..473 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18707 ID=mRNA_18707|Name=jgi.p|Trimin1|128816|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=204bp|location=Sequence derived from alignment at Contig_418:270..473- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCTTTTTCTCTGTCAACTGTGTCACAGACATCCACGGTGGATGCCGATGT
GTCTGTCGATCAGCAGCTTCCTAGGGCACATACATGCTTCTTCTCCATCA
ACCTGCCCCGCTACTCCTGTGACAACGTCATGGCGGAGCGGCTAAAATAT
GCCATGTACAACTGTATCGAAATGGATGCAGACTTTAGGCTGGCGGACAC
AGAG
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protein sequence of jgi.p|Trimin1|128816

>Trimin1|128816|gw1.418.1.1 ID=Trimin1|128816|gw1.418.1.1|Name=jgi.p|Trimin1|128816|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=68bp
SFSLSTVSQTSTVDADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKY
AMYNCIEMDADFRLADTE
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mRNA from alignment at Contig_418:270..473-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18707 ID=mRNA_18707|Name=jgi.p|Trimin1|128816|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=204bp|location=Sequence derived from alignment at Contig_418:270..473- (Tribonema minus UTEX_B_3156 )
TCTTTTTCTCTGTCAACTGTGTCACAGACATCCACGGTGGATGCCGATGT
GTCTGTCGATCAGCAGCTTCCTAGGGCACATACATGCTTCTTCTCCATCA
ACCTGCCCCGCTACTCCTGTGACAACGTCATGGCGGAGCGGCTAAAATAT
GCCATGTACAACTGTATCGAAATGGATGCAGACTTTAGGCTGGCGGACAC
AGAG
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Coding sequence (CDS) from alignment at Contig_418:270..473-

>mRNA_18707 ID=mRNA_18707|Name=jgi.p|Trimin1|128816|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=204bp|location=Sequence derived from alignment at Contig_418:270..473- (Tribonema minus UTEX_B_3156 )
TCTTTTTCTCTGTCAACTGTGTCACAGACATCCACGGTGGATGCCGATGT
GTCTGTCGATCAGCAGCTTCCTAGGGCACATACATGCTTCTTCTCCATCA
ACCTGCCCCGCTACTCCTGTGACAACGTCATGGCGGAGCGGCTAAAATAT
GCCATGTACAACTGTATCGAAATGGATGCAGACTTTAGGCTGGCGGACAC
AGAG
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