mRNA_18695 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|131908
Unique Name	mRNA_18695
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|131908 vs. uniprot
Match: A0A835YV10_9STRA (Membrane subunit of NADH:quinone oxidoreductase/Mrp antiporter (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV10_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.200e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1

Query:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDMAV 273
            TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDMAV
Sbjct:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDMAV 91

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BLAST of jgi.p|Trimin1|131908 vs. uniprot
Match: A0A835ZB82_9STRA (Various chains-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB82_9STRA)

HSP 1 Score: 177 bits (450), Expect = 3.700e-56
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1

Query:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDMAV 273
            TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFY+ DMAV
Sbjct:    7 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDMAV 97

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BLAST of jgi.p|Trimin1|131908 vs. uniprot
Match: D2Z207_9STRA (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Chattonella marina TaxID=90936 RepID=D2Z207_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.930e-42
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 1

Query:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDM 267
            TCSQLGY++FACGLS YSVG+FHLANHAFFKALLFLGAGSVIHG+SDEQDMRK+GGL++LLPFTY+++ +GS SL+GLPFLTGFY+ D+
Sbjct:  316 TCSQLGYMVFACGLSNYSVGIFHLANHAFFKALLFLGAGSVIHGVSDEQDMRKMGGLKKLLPFTYSMMLIGSLSLMGLPFLTGFYSKDV 404

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BLAST of jgi.p|Trimin1|131908 vs. uniprot
Match: Q8SKM1_COLIR (NADH dehydrogenase subunit 5 (Fragment) n=4 Tax=Coleochaete TaxID=3123 RepID=Q8SKM1_COLIR)

HSP 1 Score: 147 bits (372), Expect = 6.270e-42
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1

Query:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDM 267
            TCSQLGY+IFACG+SQYSVG+FHL NHAFFKALLFL AGSVIH +SDEQDMRK+GGL  LLPFTYA++ +GS SLIG PFLTGFY+ D+
Sbjct:  139 TCSQLGYMIFACGISQYSVGIFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRKMGGLVSLLPFTYAMMLIGSLSLIGFPFLTGFYSKDV 227

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BLAST of jgi.p|Trimin1|131908 vs. uniprot
Match: A0A649UD00_AURAN (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A649UD00_AURAN)

HSP 1 Score: 153 bits (386), Expect = 1.490e-41
Identity = 71/89 (79.78%), Postives = 84/89 (94.38%), Query Frame = 1

Query:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDM 267
            TCSQLGY++FACG+S Y+VGVFHLANHAFFKALLFL AGSVIHG+SDEQDMRK+GGLRRLLPFTYA++ +GS SL+G+PFLTGFY+ D+
Sbjct:  316 TCSQLGYMVFACGVSNYAVGVFHLANHAFFKALLFLSAGSVIHGVSDEQDMRKMGGLRRLLPFTYAMMLIGSLSLMGMPFLTGFYSKDV 404

[Close]

BLAST of jgi.p|Trimin1|131908 vs. uniprot
Match: A0A7S6ZPE4_9STRA (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPE4_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.610e-41
Identity = 71/89 (79.78%), Postives = 82/89 (92.13%), Query Frame = 1

Query:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDM 267
            TCSQLGY++FACGLS YSV VFHLANHAFFKALLFLGAGSVIH + DEQDMRK+GGLRRLLPFTYA++ +GS SL+G+PFLTGFY+ D+
Sbjct:  316 TCSQLGYMVFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAMGDEQDMRKMGGLRRLLPFTYAMMLVGSLSLMGMPFLTGFYSKDL 404

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BLAST of jgi.p|Trimin1|131908 vs. uniprot
Match: D2Z253_HETAK (NADH-ubiquinone oxidoreductase chain 5 n=7 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z253_HETAK)

HSP 1 Score: 151 bits (382), Expect = 5.200e-41
Identity = 70/89 (78.65%), Postives = 83/89 (93.26%), Query Frame = 1

Query:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDM 267
            TCSQLGY++FACGLS YSVGVFHLANHAFFKALLFLGAGSVIH +SDEQDMRK+GGL++LLPFTY ++ +GS SL+G+PFLTGFY+ D+
Sbjct:  316 TCSQLGYMVFACGLSNYSVGVFHLANHAFFKALLFLGAGSVIHAVSDEQDMRKMGGLKKLLPFTYGMMLIGSLSLMGMPFLTGFYSKDV 404

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BLAST of jgi.p|Trimin1|131908 vs. uniprot
Match: A0A0H3U9D2_9LILI (NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=Enhalus acoroides TaxID=55455 RepID=A0A0H3U9D2_9LILI)

HSP 1 Score: 142 bits (359), Expect = 5.880e-41
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 1

Query:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDM 267
            TCSQLGY+IFACG+S+YSVGVFHL NHAFFKA LFL AGSVIH +SDEQDMRK+GGL    P TYAI+ +GSFSLIG PFLTGFY+ D+
Sbjct:   61 TCSQLGYMIFACGISEYSVGVFHLMNHAFFKASLFLSAGSVIHAMSDEQDMRKMGGLASSFPLTYAIMLIGSFSLIGFPFLTGFYSKDV 149

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BLAST of jgi.p|Trimin1|131908 vs. uniprot
Match: A0A8F0K255_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0K255_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 6.990e-41
Identity = 70/89 (78.65%), Postives = 82/89 (92.13%), Query Frame = 1

Query:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDM 267
            TCSQLGY++FACGLS YSV VFHLANHAFFKALLFLGAGSVIH + DEQDMRK+GGLRRLLPFTYA++ +GS +L+G+PFLTGFY+ D+
Sbjct:  316 TCSQLGYMVFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYAVMVIGSLALMGMPFLTGFYSKDV 404

[Close]

BLAST of jgi.p|Trimin1|131908 vs. uniprot
Match: A0A8F0K0D6_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0K0D6_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 9.650e-41
Identity = 71/89 (79.78%), Postives = 82/89 (92.13%), Query Frame = 1

Query:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDM 267
            TCSQLGY+IFACGLS YSV VFHLANHAFFKALLFLGAGSVIH + DEQDMRK+GGLRRLLPFTYA++ +GS +L+G+PFLTGFY+ D+
Sbjct:  316 TCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYAMMVIGSLALMGMPFLTGFYSKDV 404

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|131908 vs. uniprot

BLAST of jgi.p|Trimin1|131908 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YV10_9STRA	5.200e-58	100.00	Membrane subunit of NADH:quinone oxidoreductase/Mr...	[more]
A0A835ZB82_9STRA	3.700e-56	97.80	Various chains-domain-containing protein n=1 Tax=T...	[more]
D2Z207_9STRA	3.930e-42	79.78	NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Cha...	[more]
Q8SKM1_COLIR	6.270e-42	78.65	NADH dehydrogenase subunit 5 (Fragment) n=4 Tax=Co...	[more]
A0A649UD00_AURAN	1.490e-41	79.78	NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Pel...	[more]
A0A7S6ZPE4_9STRA	3.610e-41	79.78	NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Sch...	[more]
D2Z253_HETAK	5.200e-41	78.65	NADH-ubiquinone oxidoreductase chain 5 n=7 Tax=Het...	[more]
A0A0H3U9D2_9LILI	5.880e-41	76.40	NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=En...	[more]
A0A8F0K255_9PHAE	6.990e-41	78.65	NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Lam...	[more]
A0A8F0K0D6_9PHAE	9.650e-41	79.78	NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Cho...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_345	contig	Contig_345:18275..18547 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|131908\|gw1.345.5.1
KEGG TC	3.D.1.6
BRITE	ko00000,ko00001,ko00002,ko01000,ko03029
KEGG rclass	RC00061
KEGG Reaction	R11945
KEGG Module	M00142
KEGG Pathway	ko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ko	ko:K03883
EC	1.6.5.3
Description	Proton-conducting membrane transporter
COG category	C
Max annot lvl	33208\|Metazoa
EggNOG OGs	COG1007@1\|root,KOG4668@2759\|Eukaryota,38F5W@33154\|Opisthokonta,3BEVW@33208\|Metazoa,3CTS4@33213\|Bilateria,422JH@6656\|Arthropoda
Evalue	5.7e-41
Seed ortholog	6669.EFX60005
Hectar predicted targeting category	signal peptide
TranscriptId	132230
Track	FilteredModels1
ProteinId	131908

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|131908	gene_18695	Tribonema minus UTEX_B_3156	gene	Contig_345 18275..18547 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_18695_1	exon_18695_1	Tribonema minus UTEX_B_3156	exon	Contig_345 18275..18547 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_18695	CDS_18695	Tribonema minus UTEX_B_3156	CDS	Contig_345 18275..18547 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|131908	Trimin1\|131908\|gw1.345.5.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_345 18275..18547 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_345:18275..18547-
coding sequence from alignment at Contig_345:18275..18547-

spliced messenger RNA

>mRNA_18695 ID=mRNA_18695|Name=jgi.p|Trimin1|131908|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_345:18275..18547- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACTTGTAGTCAGTTAGGTTATATAATTTTTGCTTGTGGTTTAAGTCAATA
CAGTGTTGGTGTTTTTCATTTAGCAAATCATGCATTTTTTAAAGCTTTGC
TATTTTTAGGCGCTGGTTCTGTCATTCATGGATTATCTGATGAACAAGAC
ATGCGTAAAATAGGAGGTTTACGTCGACTATTACCATTTACTTATGCTAT
AATAAGTCTCGGTTCATTTTCTTTGATAGGGCTACCGTTTTTAACAGGAT
TTTATGCAATAGATATGGCAGTG

protein sequence of jgi.p|Trimin1|131908

>Trimin1|131908|gw1.345.5.1 ID=Trimin1|131908|gw1.345.5.1|Name=jgi.p|Trimin1|131908|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQD
MRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDMAV

mRNA from alignment at Contig_345:18275..18547-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_18695 ID=mRNA_18695|Name=jgi.p|Trimin1|131908|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_345:18275..18547- (Tribonema minus UTEX_B_3156 )
ACTTGTAGTCAGTTAGGTTATATAATTTTTGCTTGTGGTTTAAGTCAATA
CAGTGTTGGTGTTTTTCATTTAGCAAATCATGCATTTTTTAAAGCTTTGC
TATTTTTAGGCGCTGGTTCTGTCATTCATGGATTATCTGATGAACAAGAC
ATGCGTAAAATAGGAGGTTTACGTCGACTATTACCATTTACTTATGCTAT
AATAAGTCTCGGTTCATTTTCTTTGATAGGGCTACCGTTTTTAACAGGAT
TTTATGCAATAGATATGGCAGTG

Coding sequence (CDS) from alignment at Contig_345:18275..18547-

>mRNA_18695 ID=mRNA_18695|Name=jgi.p|Trimin1|131908|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_345:18275..18547- (Tribonema minus UTEX_B_3156 )
ACTTGTAGTCAGTTAGGTTATATAATTTTTGCTTGTGGTTTAAGTCAATA
CAGTGTTGGTGTTTTTCATTTAGCAAATCATGCATTTTTTAAAGCTTTGC
TATTTTTAGGCGCTGGTTCTGTCATTCATGGATTATCTGATGAACAAGAC
ATGCGTAAAATAGGAGGTTTACGTCGACTATTACCATTTACTTATGCTAT
AATAAGTCTCGGTTCATTTTCTTTGATAGGGCTACCGTTTTTAACAGGAT
TTTATGCAATAGATATGGCAGTG