mRNA_18678 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354576
Unique NamemRNA_18678
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354576 vs. uniprot
Match: A0A835Z0Y5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y5_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.290e-38
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 3 
Query:   45 MRGIMNHQRQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG 236
            MRGIMNHQRQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG
Sbjct:    1 MRGIMNHQRQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG 64
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BLAST of jgi.p|Trimin1|354576 vs. uniprot
Match: A0A836CCH0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH0_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.220e-30
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   66 QRQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG 236
            +RQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG
Sbjct:  194 ERQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG 250
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BLAST of jgi.p|Trimin1|354576 vs. uniprot
Match: A0A835YZZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.350e-29
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   66 QRQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG 236
            +RQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG
Sbjct:  279 ERQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG 335
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BLAST of jgi.p|Trimin1|354576 vs. uniprot
Match: A0A835ZHK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.700e-29
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:   66 QRQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG 236
            +RQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG
Sbjct:  395 ERQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG 451
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BLAST of jgi.p|Trimin1|354576 vs. uniprot
Match: A0A835Z1J5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1J5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.630e-13
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   34 HAAGCVES*ITSGRRRQRRRSRWRSGGAEGEDAQGTLRAQQHRTLNL 174
            H+AG   +   +GRRRQRRRSRWRSGGAEGEDAQGTLRAQQHRTLNL
Sbjct:   30 HSAG-TRAPEATGRRRQRRRSRWRSGGAEGEDAQGTLRAQQHRTLNL 75
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BLAST of jgi.p|Trimin1|354576 vs. uniprot
Match: A0A836CI10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI10_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.910e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   49 VES*ITSGRRRQRRRSRWRSGGAEGEDAQGTLRAQQHRTLNL 174
            +++    GRRRQRRRSRWRSGGAEGEDAQGTLRAQQHRTLNL
Sbjct:  163 LQAHANGGRRRQRRRSRWRSGGAEGEDAQGTLRAQQHRTLNL 204
[Close]
BLAST of jgi.p|Trimin1|354576 vs. uniprot
Match: A0A835Z9K7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.230e-11
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:   67 SGRRRQRRRSRWRSGGAEGEDAQGTLRAQQHRTLNL 174
            +GRRRQRRRSRWRSGGAEGEDAQGTLRAQQHRTLNL
Sbjct:  584 NGRRRQRRRSRWRSGGAEGEDAQGTLRAQQHRTLNL 619
[Close]
BLAST of jgi.p|Trimin1|354576 vs. uniprot
Match: A0A836CBA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.360e-8
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   73 RRRQRRRSRWRSGGAEGEDAQGTLRAQQHRTLNL 174
            RR   RRSRWRSGGAEGEDAQGTLRAQQHRTLNL
Sbjct:  670 RRGATRRSRWRSGGAEGEDAQGTLRAQQHRTLNL 703
[Close]
BLAST of jgi.p|Trimin1|354576 vs. uniprot
Match: A0A835YUV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.770e-7
Identity = 27/40 (67.50%), Postives = 29/40 (72.50%), Query Frame = 3 
Query:  117 GRRGCTGDTEGTAAPHAQPTPPWCWPLGTPSDTAAATDPG 236
            G     G T+  AAP+   TPPWCWPLGTPSDTAAATDPG
Sbjct:  125 GLMAAVGKTQAEAAPNN--TPPWCWPLGTPSDTAAATDPG 162
[Close]
BLAST of jgi.p|Trimin1|354576 vs. uniprot
Match: A0A835YP14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP14_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.350e-6
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 3 
Query:  174 TPPWCWPLGTPSDTAAATDPG 236
            TPPWCWPLGTPSDTAAATDPG
Sbjct:   23 TPPWCWPLGTPSDTAAATDPG 43
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354576 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835Z0Y5_9STRA1.290e-38100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCH0_9STRA3.220e-3098.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZZ7_9STRA1.350e-2998.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHK3_9STRA4.700e-2998.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1J5_9STRA4.630e-1380.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CI10_9STRA9.910e-1283.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9K7_9STRA2.230e-1197.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBA9_9STRA5.360e-891.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUV7_9STRA2.770e-767.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YP14_9STRA2.350e-6100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_274contigContig_274:76685..79501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354576|estExt_Genemark1.C_Ctg_2740012
Hectar predicted targeting categoryother localisation
TranscriptId354898
TrackFilteredModels1
ProteinId354576
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354576gene_18678Tribonema minus UTEX_B_3156 geneContig_274 76685..79501 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18678_1exon_18678_1Tribonema minus UTEX_B_3156 exonContig_274 76685..76752 +
exon_18678_2exon_18678_2Tribonema minus UTEX_B_3156 exonContig_274 78301..78405 +
exon_18678_3exon_18678_3Tribonema minus UTEX_B_3156 exonContig_274 79241..79501 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_18678UTR5_18678Tribonema minus UTEX_B_3156 five_prime_UTRContig_274 76685..76728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18678CDS_18678Tribonema minus UTEX_B_3156 CDSContig_274 76729..76752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354576Trimin1|354576|estExt_Genemark1.C_Ctg_2740012Tribonema minus UTEX_B_3156 polypeptideContig_274 76729..79501 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18678 ID=mRNA_18678|Name=jgi.p|Trimin1|354576|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=434bp|location=Sequence derived from alignment at Contig_274:76685..79501+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCTGACTGCTGAAAACTGCAGTGTGCACCGTGCATGCGGCAGGATGCGT
GGAATCATGAATCACCAGCGGCAGGAGGAGGCAGCGAAGGAGGAGCCGCT
GGCGGAGCGGCGGCGCGGAAGGCGAGGATGCACAGGGGACACTGAGGGCA
CAGCAGCACCGCACGCTCAACCTACGCCGCCATGGTGTTGGCCGTTGGGT
ACGCCTAGTGATACCGCCGCCGCCACCGATCCCGGGCCCGCCGCCAATCC
CGGGCCCGCCGCCGATCCCGGGCCCGCCGCCGATCCCGGGCCCGCCGCCG
ATACCGGGCCCCCCGCCGATACCGGGCCCGCCGCCGATACCGGGCCCACC
GCCGATACCGGGCCCGCCGCCGATACCGGACCCGCCACCGATACCCGGCC
CGCCACCACCTCAGCTGATGGCCCAGAGCTCTAG
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protein sequence of jgi.p|Trimin1|354576

>Trimin1|354576|estExt_Genemark1.C_Ctg_2740012 ID=Trimin1|354576|estExt_Genemark1.C_Ctg_2740012|Name=jgi.p|Trimin1|354576|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=130bp
MRGIMNHQRQEEAAKEEPLAERRRGRRGCTGDTEGTAAPHAQPTPPWCWP
LGTPSDTAAATDPGPAANPGPAADPGPAADPGPAADTGPPADTGPAADTG
PTADTGPAADTGPATDTRPATTSADGPEL*
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mRNA from alignment at Contig_274:76685..79501+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18678 ID=mRNA_18678|Name=jgi.p|Trimin1|354576|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2817bp|location=Sequence derived from alignment at Contig_274:76685..79501+ (Tribonema minus UTEX_B_3156 )
GGCTGACTGCTGAAAACTGCAGTGTGCACCGTGCATGCGGCAGGATGCGT
GGAATCATGAATCACCAGGTCGAATGTCACTGTGCAGGCTTCGTGTACAG
TTTGTGTAGGGTTGCAGCAGGGGCAGTCGCCACCTGCTAGCTTTTGTATC
ACACACAGGCGGCGGCAACAGCATCTAGCTGTGCATCTGGGTGCGTCCAT
CTTGACCTTAGGAGTGAGGATGCATGGCGAATGCTCTCTGCAGTTGCTGT
GGCGGCTATCGCCAACAGCATCAGCAGGGTTTGCTGACTGCTCAAACAAA
AACTGTTCATTCCCGGCAACCATTTTTGGCTTGTGGCTGTGCTGTTTTGT
GTTGCCCCGATATGTCAGATGACAGCATGGGCACCTGCAACGCTTGATCT
GTGCTTTGCACATCTGCATTTTGCACTTTCAATACATGCATGCTTGTGCA
GTTCATTCATGAGCATCAAGCACTTCAGAAGCATTAAAGCATTGGTGAGG
ACGGCTCTGTCGAACTGTCCAGGGAAAAGTGCCAAAATCATTCATGGAAA
TTTACACGAAGCAACAAGGGTGCCAGAAGCAACATTTCCTGCTGCAGTTG
CTGTAGTTGGGTATTTTTTGTAGCACCCTGAAGGGATGGCGTTTGTTCAT
GAGACATGAAATGTCATTAGTCAGCCTATGCCACCTGCGTGTTTGCATAC
ATGATGACTACGGTTACTGTTGCTTCTGCTCAAACCATTTGGAGTGTATT
ATAATGTGACATCACTGCTGCATCTCACATTGGCTGTGTGTGCACTACAC
TGCACGCGCAATGCAACGCACAAGCATGAAGACTAGCAGCCCAAGATATT
GTGCTCAAGATATTGTGGAAATTATTGTAAAGGCAGGAGCGATGTGTACC
ATTTTGCAATGTTGATCAGGAGTGATCATCACTGCGCTTTGAAAAACTCG
TGTTATCCTCAGTACAATCCATGCCGCTCACCCCTGTGGGGCTTTCTGTC
ATCCTCTGTGGGATGTACGTATGGACTTGTATTTTATAAAGGCCCAAGGG
ATACTTTGACCGTCGCGTGCTTTGTGGGGGCTATACACAAACGGTGTACT
CAGATTCTGACTCTGTACTCGGTCGCCACTGGCTTCGTTGCTGCTTGACG
TTGGGTGAGGAACCCACTTAAGTGCACTTGACCTCACAAAGGGAATTCCA
TGTAAAATGTAGGTGGGTGTTCGCACAATTTGCACATGCCCATCCCGCCA
TCTCAAGTGCCATTGACAACATTTTAAAAGTCGCAGAGCAAACTCACGCA
TGCGAACCATTCTGCAAATCACCAAAATGAATGCAGGCATGCATCACCGA
CTGGATTACATGGCAACATAGTATGAGGCCGTCATATGTGCTGTAGCGTT
GGTATTGCGTGACGCGAGATCTCATCATAAGTTGTGCACATCCCGGCGTC
ACAATTGCCATCACCGACGTGATTTTCCACAGCAAGTGCAAGGATGGACA
TCACCTAGCAAATCATCAAGCAGGCGTTTCAAAGTTTATCACAATCTGTT
GCACATCAAGCCACAAAAAGCAAAACGGCGAGTGTACCGTGCTTAGCGCC
CTGCTGCTCGGGCGAGCGGCAGGAGGAGGCAGCGAAGGAGGAGCCGCTGG
CGGAGCGGCGGCGCGGAAGGCGAGGATGCACAGGGGACACTGAGGGCACA
GCAGCACCGCACGCTCAACCTGTCGGCCTGGCTACAGCCGAGGACTAGAG
AGCGGATTTTCGCTCCACCGCGGGCCTGAGGCGAACAAGGCCAGACACGC
AGCGTGGGTCGCCGGTGTAAGCAAGTAAGCCTCGCATTGATATTGCTAAA
GCTACCTACGCACACAGCGACATCGGCCGAAGCACAAGAAGGGCAAACTA
AAAAAAAACAAACAAAAAAAACAAAACATCAGACGATATCGCCGTCGACG
GATCGGGAAGGGGGAACCTAGGGCACACTGGATCGCAGGGCAGTAGATAG
CAGTTCACCAGATTAAGGTTTGAACGCTTGCTGACCAGCTTGATTTGCAG
CCGCACAAGGGACCTCGCCTGGCAGAGACTGACTGCATTCAGCACACGCA
CAGACACGACAGGACCACGACACTGCAGCGGCAAGGACACGAATTGCACA
GCATTGCATTCAGCCCAGCTGCCTTGTGTTGGTCAGAGGCAGAGAGCTTG
AGCACACCGACTCGTTCCACCACCGCTCGTTTCACGACGGCGGGAGAAGC
ACCTCAACAGATACACCAGAGCAGGACGGGATCTTGAACTGAAAGTGGTA
TAGTTGTGCAGGGGAGTATTCGCGGTTGGCAGCCGCGCATTCGAGACCGA
GCCTGGGCTCTTTTTTTTTTTTTTTTTTTTTCTCGCGCCTCAAAGTCGCC
TTTCAAAGCTATGGCTCTCCACTGGCTTACCAGCCCTGCCTCACGTGGGG
AGGGGTCACCTCTGAAACGCAAACGGGAACAGCGCAACCACGGGCTGAAT
ACTGGCTTGTGGTGGTGGCAGGTCAAAGCTGCACGCCAATCTGACACACG
CCGCAGACGCCGCCATGGTGTTGGCCGTTGGGTACGCCTAGTGATACCGC
CGCCGCCACCGATCCCGGGCCCGCCGCCAATCCCGGGCCCGCCGCCGATC
CCGGGCCCGCCGCCGATCCCGGGCCCGCCGCCGATACCGGGCCCCCCGCC
GATACCGGGCCCGCCGCCGATACCGGGCCCACCGCCGATACCGGGCCCGC
CGCCGATACCGGACCCGCCACCGATACCCGGCCCGCCACCACCTCAGCTG
ATGGCCCAGAGCTCTAG
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Coding sequence (CDS) from alignment at Contig_274:76685..79501+

>mRNA_18678 ID=mRNA_18678|Name=jgi.p|Trimin1|354576|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=390bp|location=Sequence derived from alignment at Contig_274:76685..79501+ (Tribonema minus UTEX_B_3156 )
ATGCGTGGAATCATGAATCACCAGCGGCAGGAGGAGGCAGCGAAGGAGGA
GCCGCTGGCGGAGCGGCGGCGCGGAAGGCGAGGATGCACAGGGGACACTG
AGGGCACAGCAGCACCGCACGCTCAACCTACGCCGCCATGGTGTTGGCCG
TTGGGTACGCCTAGTGATACCGCCGCCGCCACCGATCCCGGGCCCGCCGC
CAATCCCGGGCCCGCCGCCGATCCCGGGCCCGCCGCCGATCCCGGGCCCG
CCGCCGATACCGGGCCCCCCGCCGATACCGGGCCCGCCGCCGATACCGGG
CCCACCGCCGATACCGGGCCCGCCGCCGATACCGGACCCGCCACCGATAC
CCGGCCCGCCACCACCTCAGCTGATGGCCCAGAGCTCTAG
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