mRNA_18666 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|53223
Unique NamemRNA_18666
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|53223 vs. uniprot
Match: A0A835YWE7_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE7_9STRA)

HSP 1 Score: 448 bits (1152), Expect = 5.140e-157
Identity = 248/262 (94.66%), Postives = 255/262 (97.33%), Query Frame = 3 
Query:   45 MPGTSIAALGALACSVSAFALLGAGGAASGPRVKCPAPLIERLPAPGGVYRCKMVVTNELLDSWLPELPALRRMGERLAQPNAELYDVLMTGLTRSASSALQMKEKDLXXXXXXXXXXXXXXXXXXXXXXAANGLLMRVQGMLHCRGLIEKIEEKGGKKETGRSVWWRGYLKRHPELRYNLIAATSWPEDQLPYNIAAVYSRSSDEIHSTIRTAEDKVVIFVDHWSTADVACFLQLCKHHKVAPEVRRFGGEGEAGDMHNSE 830
            MPG SIAALGALACSVSA ALLGAGGAASGPR+KCPAPLIERLPAPGGVYRCKMVVTNELLDSWLPELPALRR+ ERLAQP+AELYDVLMTGLTRSASSALQMKEKDLXXXXXXXXXXXXXXXXXXXXXXAANGLLMRVQGMLHCRGLIEKIEEKGGKKETGRSVWWRGYLKRHPELR NLIAATSWPEDQLPYNIAA+YSRSSD+ HSTIRTAEDKVVIFVDHWSTA+VACFLQLCKHHKVAPE+RRFG EGEAGD HNSE
Sbjct:    1 MPGASIAALGALACSVSASALLGAGGAASGPRIKCPAPLIERLPAPGGVYRCKMVVTNELLDSWLPELPALRRIRERLAQPDAELYDVLMTGLTRSASSALQMKEKDLXXXXXXXXXXXXXXXXXXXXXXAANGLLMRVQGMLHCRGLIEKIEEKGGKKETGRSVWWRGYLKRHPELRDNLIAATSWPEDQLPYNIAAMYSRSSDKKHSTIRTAEDKVVIFVDHWSTAEVACFLQLCKHHKVAPELRRFGVEGEAGDTHNSE 262
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BLAST of jgi.p|Trimin1|53223 vs. uniprot
Match: A0A835YXW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW9_9STRA)

HSP 1 Score: 202 bits (513), Expect = 5.150e-62
Identity = 94/126 (74.60%), Postives = 106/126 (84.13%), Query Frame = 3 
Query:  453 MRVQGMLHCRGLIEKIEEKGGKKETGRSVWWRGYLKRHPELRYNLIAATSWPEDQLPYNIAAVYSRSSDEIHSTIRTAEDKVVIFVDHWSTADVACFLQLCKHHKVAPEVRRFGGEGEAGDMHNSE 830
            MRVQGMLHCRGLIEKIE KGG  E+ RS  WR YLKRH +LR+N+IAAT WPED+LP+ IAA+YSRSSDEIHSTI T +DKVVIFVD WSTA+ AC L+LCKH    PE+RRFGGEG+AGD HNSE
Sbjct:    1 MRVQGMLHCRGLIEKIEAKGGMMESERSARWRRYLKRHSQLRHNIIAATLWPEDKLPHAIAAMYSRSSDEIHSTICTTQDKVVIFVDQWSTAEAACLLELCKHLTDVPELRRFGGEGDAGDAHNSE 126
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BLAST of jgi.p|Trimin1|53223 vs. uniprot
Match: A0A835ZHL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHL3_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.540e-61
Identity = 137/278 (49.28%), Postives = 166/278 (59.71%), Query Frame = 3 
Query:  129 SGPRVKCPAPLIERLPAPGGVYRCKMVVTNELL-----DSWLPELPALRRMGERLAQPNAELYDVLMTGLTRSASSALQMKEKDLXXXXXXXXXXXXXXXXXXXXXX--------------------------------------AANGLLMRVQGMLHCRGLIEKIEEKGGKKETG-RSVWWRGYLKRHPELRYNLIAATSWPEDQLPYNIAAVYSRSSDEIHSTIRTAEDKVVIFVDHWSTADVACFLQLCKHHKVAPEVRRFGGEGEAGDMHNSE 830
            SG R+ C A L++R PA  GVY CKM  T E+L     D  LPELP LRRMGER AQP+A LY++L+T L RSA+ ALQ K+KDL             XXXXXXXXX                                       ANG LMR QG LH RG+ EKIE KGGK++   R+ W R Y  RH  LR+N+IAAT W E+QL +NIAA+Y RSSD+IHST+R+ E+KVVIF D WS A+ AC LQLCKH +VA E+R +     AGD H+S+
Sbjct:  373 SGLRINCLA-LVKRPPAHDGVY-CKMAATTEVLLDQELDQVLPELPELRRMGERFAQPDATLYNILLTRLARSATEALQSKDKDLELVRCMRDRDLAMXXXXXXXXXXXXXXXXXXXIIKVQEQAXXXXXXXXXXXTELLTQELEVANGKLMRRQGTLHSRGVFEKIERKGGKEDDDIRTEWSRVYFNRHLLLRHNIIAATEWSENQLAHNIAAMYDRSSDKIHSTMRSLENKVVIFTDRWSAAEAACLLQLCKHLRVASELREYDDGDGAGDTHDSK 648
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|53223 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YWE7_9STRA5.140e-15794.66Uncharacterized protein n=4 Tax=Tribonema minus Ta... [more]
A0A835YXW9_9STRA5.150e-6274.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHL3_9STRA2.540e-6149.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_285contigContig_285:15551..17615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|53223|CE53222_163
Hectar predicted targeting categorysignal peptide
TranscriptId53545
TrackFilteredModels1
ProteinId53223
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|53223gene_18666Tribonema minus UTEX_B_3156 geneContig_285 15551..17615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|53223Trimin1|53223|CE53222_163Tribonema minus UTEX_B_3156 polypeptideContig_285 15670..17571 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18666_4exon_18666_4Tribonema minus UTEX_B_3156 exonContig_285 15551..16095 -
exon_18666_3exon_18666_3Tribonema minus UTEX_B_3156 exonContig_285 16676..16879 -
exon_18666_2exon_18666_2Tribonema minus UTEX_B_3156 exonContig_285 17205..17290 -
exon_18666_1exon_18666_1Tribonema minus UTEX_B_3156 exonContig_285 17499..17615 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18666UTR3_18666Tribonema minus UTEX_B_3156 three_prime_UTRContig_285 15551..15669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18666CDS_18666Tribonema minus UTEX_B_3156 CDSContig_285 17499..17571 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_18666UTR5_18666Tribonema minus UTEX_B_3156 five_prime_UTRContig_285 17572..17615 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18666 ID=mRNA_18666|Name=jgi.p|Trimin1|53223|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=952bp|location=Sequence derived from alignment at Contig_285:15551..17615- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCAGCGCAGCTGCAACAGCATCAGCGGACTTCACACAAGCACCATGCCA
GGCACAAGCATAGCTGCTCTGGGTGCGCTAGCCTGCAGCGTATCCGCATT
CGCCCTCCTCGGTGCGGGCGGCGCCGCCTCTGGCCCTCGGGTTAAGTGCC
CGGCGCCTCTGATAGAGCGCCTGCCAGCACCCGGTGGCGTCTACCGATGC
AAGATGGTGGTGACCAACGAGCTGCTTGATAGCTGGCTGCCAGAGCTGCC
AGCCCTGAGGAGGATGGGCGAGCGGCTTGCGCAACCAAACGCTGAGCTCT
ATGACGTGTTGATGACTGGATTGACGCGCTCCGCCAGCAGTGCGCTGCAG
ATGAAGGAGAAGGACCTAGAGATGAAGGAGAAGGACCTGATCATCAGTGC
CAAGGAGACGGAGCTGGTCACAAGAGAGCTGGAGGCGGCAAATGGCCTGC
TCATGAGGGTGCAGGGCATGCTTCACTGCCGCGGTCTGATTGAGAAGATT
GAGGAGAAGGGAGGAAAGAAGGAAACCGGACGGTCTGTGTGGTGGCGCGG
CTACCTCAAGCGTCACCCTGAGCTGCGATACAACCTTATTGCGGCGACAA
GCTGGCCTGAGGACCAGCTGCCATATAACATCGCGGCTGTGTACAGCAGA
TCTTCAGACGAAATACACAGCACCATCCGCACAGCAGAAGACAAGGTCGT
GATTTTTGTAGATCACTGGAGCACGGCGGATGTAGCGTGCTTTCTCCAAC
TGTGCAAGCATCACAAAGTTGCGCCGGAGGTGCGCAGGTTTGGTGGTGAG
GGCGAGGCAGGCGACATGCACAACAGCGAGTAGGCGTCGCAGCTCTTAGC
TGTGCAATGCAGTTTGATGTACATATTGCATGTACATTGAAGGACATGTT
TGGCAGCAAATCCCATGGGCTGCTTCACATTTTGATACGCCTATTGAGGC
CC
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protein sequence of jgi.p|Trimin1|53223

>Trimin1|53223|CE53222_163 ID=Trimin1|53223|CE53222_163|Name=jgi.p|Trimin1|53223|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=263bp
MPGTSIAALGALACSVSAFALLGAGGAASGPRVKCPAPLIERLPAPGGVY
RCKMVVTNELLDSWLPELPALRRMGERLAQPNAELYDVLMTGLTRSASSA
LQMKEKDLEMKEKDLIISAKETELVTRELEAANGLLMRVQGMLHCRGLIE
KIEEKGGKKETGRSVWWRGYLKRHPELRYNLIAATSWPEDQLPYNIAAVY
SRSSDEIHSTIRTAEDKVVIFVDHWSTADVACFLQLCKHHKVAPEVRRFG
GEGEAGDMHNSE*
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mRNA from alignment at Contig_285:15551..17615-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18666 ID=mRNA_18666|Name=jgi.p|Trimin1|53223|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2065bp|location=Sequence derived from alignment at Contig_285:15551..17615- (Tribonema minus UTEX_B_3156 )
AGCAGCGCAGCTGCAACAGCATCAGCGGACTTCACACAAGCACCATGCCA
GGCACAAGCATAGCTGCTCTGGGTGCGCTAGCCTGCAGCGTATCCGCATT
CGCCCTCCTCGGTGCGGGTGAGTGCGGTTGTCTCGTCTCCGGTTAGTGCG
TGTTTGGTGCTGATGATGCACGAGCAGCGGCGAGGGCAACATAGACAGCC
GCGAGCGGCGGCCATACGCATACGCACTGAGTCTCTCTTGCCTGAGAGCC
AGCCAGCTCGTCTACTACTACAGAGCACGCTCACGTGATGCTTTGATGTG
ACACCTTACATCCGCCTCAACGCAGGCGGCGCCGCCTCTGGCCCTCGGGT
TAAGTGCCCGGCGCCTCTGATAGAGCGCCTGCCAGCACCCGGTGGCGTCT
ACCGATGCAAGGTGAGGCCTAACAGCACTTGACACTGTCACGTGTACAGC
ACCCAAGACCTGCGAGATTGCGGGATTGCTGGATTGCTACTGAGGTCATG
TAACCTTCCCCTATGAAGACGTTTGAACACGGTAAGTTGTCATTTATAGT
ACCTTCTCCCTGGTTTAGTGGCGACGGGTCACTATAACGAGTAAATAATG
CCAAGCCACCCTAATGCCTTTCGCCCCCCTCTTCTTACCAGCAAACACGT
CCTTTAGGAAGAGGGTATATGGCACTGTACGATACATCACTCACACTCTT
CTCTCCTGCTTCTACGTACCCCTCCGCATCGCTCAGATGGTGGTGACCAA
CGAGCTGCTTGATAGCTGGCTGCCAGAGCTGCCAGCCCTGAGGAGGATGG
GCGAGCGGCTTGCGCAACCAAACGCTGAGCTCTATGACGTGTTGATGACT
GGATTGACGCGCTCCGCCAGCAGTGCGCTGCAGATGAAGGAGAAGGACCT
AGAGATGAAGGAGAAGGACCTGATCATCAGTGCCAAGGAGGTGAGCAACA
GAATGTTTCATGATCCAATTTTGTTGAAGAAAGCGCTTTGGACAGCACAC
CTGCTCATACAATTTGCGATTTTGACGCCCCCATGACCAAAGGCAAGTTC
AAGGCACTTGGCTGATTGCTGAACCCTCATGTGCTTGTAACCGCGAACCA
ATCACGAAGCACCTCTTTCCCAGGCGTCTCTCGCAGGCGTCATGGCATGG
CATTGATGTACGCGACGCGTAGTGGTGCGAGCACAGCTTACCAGTACACT
GTGGTGAGAGCTTAGATGCGGCTCGCGGTGGTCATGCGCCCTCCTATCAC
CGCTGCAGCGCTCGATAGGGTGCGAAGTATGTTAGTATGCGCGAGCATCC
TTGCAAGGGGTGCTCGCTACGCTCGCACATCAGAGGGGGTAGAGCGACAC
TCACCTTTTCCAGCGGTGCTGTGTATAGGGGTGTTGACGCATGAGGCATT
GCCAGCTGCATTGCATGGACAGCAGTATCTAACCTGTGCATGCATGTGGT
AGGGCAGTTGACACATTCTCTCTGTATGCCCTTTTTTGATATGCCGTATG
TCGCTCATCACGATTCGCAGACGGAGCTGGTCACAAGAGAGCTGGAGGCG
GCAAATGGCCTGCTCATGAGGGTGCAGGGCATGCTTCACTGCCGCGGTCT
GATTGAGAAGATTGAGGAGAAGGGAGGAAAGAAGGAAACCGGACGGTCTG
TGTGGTGGCGCGGCTACCTCAAGCGTCACCCTGAGCTGCGATACAACCTT
ATTGCGGCGACAAGCTGGCCTGAGGACCAGCTGCCATATAACATCGCGGC
TGTGTACAGCAGATCTTCAGACGAAATACACAGCACCATCCGCACAGCAG
AAGACAAGGTCGTGATTTTTGTAGATCACTGGAGCACGGCGGATGTAGCG
TGCTTTCTCCAACTGTGCAAGCATCACAAAGTTGCGCCGGAGGTGCGCAG
GTTTGGTGGTGAGGGCGAGGCAGGCGACATGCACAACAGCGAGTAGGCGT
CGCAGCTCTTAGCTGTGCAATGCAGTTTGATGTACATATTGCATGTACAT
TGAAGGACATGTTTGGCAGCAAATCCCATGGGCTGCTTCACATTTTGATA
CGCCTATTGAGGCCC
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Coding sequence (CDS) from alignment at Contig_285:15551..17615-

>mRNA_18666 ID=mRNA_18666|Name=jgi.p|Trimin1|53223|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=789bp|location=Sequence derived from alignment at Contig_285:15551..17615- (Tribonema minus UTEX_B_3156 )
ATGCCAGGCACAAGCATAGCTGCTCTGGGTGCGCTAGCCTGCAGCGTATC
CGCATTCGCCCTCCTCGGTGCGGGCGGCGCCGCCTCTGGCCCTCGGGTTA
AGTGCCCGGCGCCTCTGATAGAGCGCCTGCCAGCACCCGGTGGCGTCTAC
CGATGCAAGATGGTGGTGACCAACGAGCTGCTTGATAGCTGGCTGCCAGA
GCTGCCAGCCCTGAGGAGGATGGGCGAGCGGCTTGCGCAACCAAACGCTG
AGCTCTATGACGTGTTGATGACTGGATTGACGCGCTCCGCCAGCAGTGCG
CTGCAGATGAAGGAGAAGGACCTAGAGATGAAGGAGAAGGACCTGATCAT
CAGTGCCAAGGAGACGGAGCTGGTCACAAGAGAGCTGGAGGCGGCAAATG
GCCTGCTCATGAGGGTGCAGGGCATGCTTCACTGCCGCGGTCTGATTGAG
AAGATTGAGGAGAAGGGAGGAAAGAAGGAAACCGGACGGTCTGTGTGGTG
GCGCGGCTACCTCAAGCGTCACCCTGAGCTGCGATACAACCTTATTGCGG
CGACAAGCTGGCCTGAGGACCAGCTGCCATATAACATCGCGGCTGTGTAC
AGCAGATCTTCAGACGAAATACACAGCACCATCCGCACAGCAGAAGACAA
GGTCGTGATTTTTGTAGATCACTGGAGCACGGCGGATGTAGCGTGCTTTC
TCCAACTGTGCAAGCATCACAAAGTTGCGCCGGAGGTGCGCAGGTTTGGT
GGTGAGGGCGAGGCAGGCGACATGCACAACAGCGAGTAG
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