mRNA_18664 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140907
Unique NamemRNA_18664
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|140907 vs. uniprot
Match: A0A835YRR2_9STRA (Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.590e-36
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 186
            IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT
Sbjct:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 62
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BLAST of jgi.p|Trimin1|140907 vs. uniprot
Match: A0A3M8ETS2_DESBX (Rhamnosyl O-methyltransferase n=1 Tax=Desulfuromonadales bacterium TaxID=2099678 RepID=A0A3M8ETS2_DESBX)

HSP 1 Score: 107 bits (268), Expect = 2.360e-27
Identity = 50/62 (80.65%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 186
            IQMIQGSSIA D+IAQV+ VAARY RV+VCLDSNHTHDHVLAEL+AYAP+ S++SYC+VFDT
Sbjct:  139 IQMIQGSSIAPDIIAQVKTVAARYSRVLVCLDSNHTHDHVLAELDAYAPLTSVNSYCVVFDT 200
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BLAST of jgi.p|Trimin1|140907 vs. uniprot
Match: A0A1A1VJI5_9MYCO (Rhamnosyl O-methyltransferase n=4 Tax=Mycobacterium TaxID=1763 RepID=A0A1A1VJI5_9MYCO)

HSP 1 Score: 107 bits (267), Expect = 3.130e-27
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 186
            IQMIQGSSIA DV+AQV ++AA+Y RV+VCLDSNHTHDHVLAELEAYAP+ S+ SYC+VFDT
Sbjct:  136 IQMIQGSSIAPDVVAQVNEIAAKYERVLVCLDSNHTHDHVLAELEAYAPLTSVGSYCVVFDT 197
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BLAST of jgi.p|Trimin1|140907 vs. uniprot
Match: A0A6G6FG33_9RHOB (Rhamnosyl O-methyltransferase n=1 Tax=Pseudohalocynthiibacter aestuariivivens TaxID=1591409 RepID=A0A6G6FG33_9RHOB)

HSP 1 Score: 105 bits (262), Expect = 1.740e-26
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 186
            IQMIQGSSIA DVIAQVRDVAA Y RV+VCLDSNHTHDHV +ELE YAP+ SL SYC+VFDT
Sbjct:  136 IQMIQGSSIADDVIAQVRDVAAGYDRVLVCLDSNHTHDHVRSELELYAPLTSLGSYCVVFDT 197
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BLAST of jgi.p|Trimin1|140907 vs. uniprot
Match: A0A7Z0SCV8_9BURK (Rhamnosyl O-methyltransferase n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A7Z0SCV8_9BURK)

HSP 1 Score: 105 bits (261), Expect = 2.610e-26
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 186
            IQMIQGSSIAS+VI QVR +A  Y RV+VCLDSNHTH+HVLAEL+AYAPMVSL SYC+VFDT
Sbjct:  139 IQMIQGSSIASEVIEQVRSIAVDYSRVLVCLDSNHTHEHVLAELQAYAPMVSLGSYCVVFDT 200
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BLAST of jgi.p|Trimin1|140907 vs. uniprot
Match: A0A8J8FQB0_9GAMM (Rhamnosyl O-methyltransferase n=1 Tax=Methylomarinum sp. TaxID=2685872 RepID=A0A8J8FQB0_9GAMM)

HSP 1 Score: 104 bits (259), Expect = 4.770e-26
Identity = 46/62 (74.19%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 186
            IQM+QGSSIA D+I QV+D+A  Y+R++VCLDSNHTH HVLAELEAYAP+ S+DSYC+VFDT
Sbjct:  122 IQMLQGSSIAEDMIKQVKDIAKNYKRILVCLDSNHTHKHVLAELEAYAPLTSVDSYCVVFDT 183
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BLAST of jgi.p|Trimin1|140907 vs. uniprot
Match: A0A849KHW9_9BURK (Rhamnosyl O-methyltransferase n=1 Tax=Ramlibacter sp. B156 TaxID=2732512 RepID=A0A849KHW9_9BURK)

HSP 1 Score: 104 bits (259), Expect = 4.970e-26
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 186
            IQMIQGSSIA +++ QV+D A  YRRV+VCLDSNHTHDHVLAELEAYAPM S+ SYC+VFDT
Sbjct:  137 IQMIQGSSIAPEIVQQVKDAARGYRRVLVCLDSNHTHDHVLAELEAYAPMTSVGSYCVVFDT 198
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BLAST of jgi.p|Trimin1|140907 vs. uniprot
Match: UPI000F8309B8 (cephalosporin hydroxylase family protein n=1 Tax=Sulfuriflexus mobilis TaxID=1811807 RepID=UPI000F8309B8)

HSP 1 Score: 104 bits (259), Expect = 5.180e-26
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 186
            IQMIQGSSIA D+I QVR  AA Y RV+VCLDSNHTHDHVLAEL+AYAP+ S DSYC+VFDT
Sbjct:  139 IQMIQGSSIAPDIIEQVRHAAANYSRVLVCLDSNHTHDHVLAELQAYAPLTSKDSYCVVFDT 200
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BLAST of jgi.p|Trimin1|140907 vs. uniprot
Match: A0A1A3CQJ0_9MYCO (Rhamnosyl O-methyltransferase n=2 Tax=Mycobacterium sp. 1245805.9 TaxID=1856862 RepID=A0A1A3CQJ0_9MYCO)

HSP 1 Score: 103 bits (257), Expect = 7.370e-26
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 186
            IQMIQGSSIASDV+A+VR++AA YRRV+VCLDSNHTH HVLAELEAYAP+ S+ S C+VFDT
Sbjct:  119 IQMIQGSSIASDVVARVREIAAGYRRVLVCLDSNHTHAHVLAELEAYAPLTSVGSSCVVFDT 180
[Close]
BLAST of jgi.p|Trimin1|140907 vs. uniprot
Match: UPI001F26EC6B (cephalosporin hydroxylase family protein n=1 Tax=Mycolicibacterium celeriflavum TaxID=1249101 RepID=UPI001F26EC6B)

HSP 1 Score: 102 bits (255), Expect = 1.660e-25
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPMVSLDSYCIVFDT 186
            IQMI+GSSIAS+V+AQVR+VAA Y +V+VCLDSNHTH HVLAELEAYAP+ S+ SYC+VFDT
Sbjct:  129 IQMIEGSSIASEVVAQVREVAAGYEQVLVCLDSNHTHAHVLAELEAYAPLTSVGSYCVVFDT 190
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140907 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRR2_9STRA2.590e-36100.00Rhamnosyl O-methyltransferase/Cephalosporin hydrox... [more]
A0A3M8ETS2_DESBX2.360e-2780.65Rhamnosyl O-methyltransferase n=1 Tax=Desulfuromon... [more]
A0A1A1VJI5_9MYCO3.130e-2779.03Rhamnosyl O-methyltransferase n=4 Tax=Mycobacteriu... [more]
A0A6G6FG33_9RHOB1.740e-2682.26Rhamnosyl O-methyltransferase n=1 Tax=Pseudohalocy... [more]
A0A7Z0SCV8_9BURK2.610e-2680.65Rhamnosyl O-methyltransferase n=1 Tax=Alcaligenace... [more]
A0A8J8FQB0_9GAMM4.770e-2674.19Rhamnosyl O-methyltransferase n=1 Tax=Methylomarin... [more]
A0A849KHW9_9BURK4.970e-2677.42Rhamnosyl O-methyltransferase n=1 Tax=Ramlibacter ... [more]
UPI000F8309B85.180e-2679.03cephalosporin hydroxylase family protein n=1 Tax=S... [more]
A0A1A3CQJ0_9MYCO7.370e-2679.03Rhamnosyl O-methyltransferase n=2 Tax=Mycobacteriu... [more]
UPI001F26EC6B1.660e-2577.42cephalosporin hydroxylase family protein n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_459contigContig_459:14242..14427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140907|gw1.459.7.1
GOsGO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009273,GO:0009987,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0030166,GO:0030203,GO:0030204,GO:0030206,GO:0034645,GO:0042546,GO:0043170,GO:0043436,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044464,GO:0050650,GO:0050654,GO:0071554,GO:0071704,GO:0071766,GO:0071770,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Descriptioncephalosporin hydroxylase
COG categoryV
Max annot lvl2|Bacteria
EggNOG OGsCOG3510@1|root,COG3510@2|Bacteria
Evalue3.15e-26
Seed ortholog768670.Calni_1158
Hectar predicted targeting categoryother localisation
TranscriptId141229
TrackFilteredModels1
ProteinId140907
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140907gene_18664Tribonema minus UTEX_B_3156 geneContig_459 14242..14427 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18664_1exon_18664_1Tribonema minus UTEX_B_3156 exonContig_459 14242..14427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18664CDS_18664Tribonema minus UTEX_B_3156 CDSContig_459 14242..14427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140907Trimin1|140907|gw1.459.7.1Tribonema minus UTEX_B_3156 polypeptideContig_459 14242..14427 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18664 ID=mRNA_18664|Name=jgi.p|Trimin1|140907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=186bp|location=Sequence derived from alignment at Contig_459:14242..14427- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCCAGATGATCCAGGGATCGAGCATCGCTTCTGACGTGATTGCACAAGT
GCGTGATGTGGCCGCCCGCTATCGGCGGGTGATGGTGTGCCTGGATAGCA
ACCATACGCATGACCACGTACTGGCGGAACTCGAGGCCTATGCTCCCATG
GTGTCCTTGGACAGCTACTGCATCGTGTTTGATACC
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protein sequence of jgi.p|Trimin1|140907

>Trimin1|140907|gw1.459.7.1 ID=Trimin1|140907|gw1.459.7.1|Name=jgi.p|Trimin1|140907|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=62bp
IQMIQGSSIASDVIAQVRDVAARYRRVMVCLDSNHTHDHVLAELEAYAPM
VSLDSYCIVFDT
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mRNA from alignment at Contig_459:14242..14427-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18664 ID=mRNA_18664|Name=jgi.p|Trimin1|140907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=186bp|location=Sequence derived from alignment at Contig_459:14242..14427- (Tribonema minus UTEX_B_3156 )
ATCCAGATGATCCAGGGATCGAGCATCGCTTCTGACGTGATTGCACAAGT
GCGTGATGTGGCCGCCCGCTATCGGCGGGTGATGGTGTGCCTGGATAGCA
ACCATACGCATGACCACGTACTGGCGGAACTCGAGGCCTATGCTCCCATG
GTGTCCTTGGACAGCTACTGCATCGTGTTTGATACC
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Coding sequence (CDS) from alignment at Contig_459:14242..14427-

>mRNA_18664 ID=mRNA_18664|Name=jgi.p|Trimin1|140907|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=186bp|location=Sequence derived from alignment at Contig_459:14242..14427- (Tribonema minus UTEX_B_3156 )
ATCCAGATGATCCAGGGATCGAGCATCGCTTCTGACGTGATTGCACAAGT
GCGTGATGTGGCCGCCCGCTATCGGCGGGTGATGGTGTGCCTGGATAGCA
ACCATACGCATGACCACGTACTGGCGGAACTCGAGGCCTATGCTCCCATG
GTGTCCTTGGACAGCTACTGCATCGTGTTTGATACC
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