mRNA_18649 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: A0A835Z3N9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N9_9STRA) HSP 1 Score: 280 bits (716), Expect = 3.370e-95 Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 Query: 1 QFQEKKHEPEYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL 447 QFQEKKHEPEYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL Sbjct: 1 QFQEKKHEPEYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL 149
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: D7FPE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPE0_ECTSI) HSP 1 Score: 137 bits (346), Expect = 5.450e-38 Identity = 78/150 (52.00%), Postives = 103/150 (68.67%), Query Frame = 1 Query: 1 QFQEKKHEPEYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDT-YSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL 447 +F EK+ EP+Y+RNVL GL+ IM + T F ICA VVA AG VLT L L WE G++ L++RGP S GFL+G +LV+ +T TA+YWGQLA CD+ Y GD +YSC+++ AMRG AFA +IW++QLPF+ L V +R VL Sbjct: 15 EFFEKQDEPQYMRNVLSGLSGIMLVFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKRGPHDTSLGFLIGVTLVLNVITLMTAIYWGQLAGCDSDYDGDYD--QYSCSNKSAMRGVAAFASIIWVLQLPFIYLLVQRRGVL 162
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: A0A7S2V692_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V692_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 4.700e-20 Identity = 52/126 (41.27%), Postives = 80/126 (63.49%), Query Frame = 1 Query: 28 EYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQ 405 ++ + L G+ A G+LT + IC+ VVA TA AG AVLT L + G+ ++ + ALS GFL+G S ++ L+ ETA+YWGQLA C+T S ++ +YSC+++ R CAFA L++++Q Sbjct: 8 DHTKATLFGIGA-HGVLTACYLICSFVVASTANAGFNAVLTGLVYAVYCVGAYQVLHKSKTALSVGFLIGFSALLIVLSLETAIYWGQLANCETVSESIS--QYSCSNKSGYRAVCAFASLLFILQ 130
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: W7TS32_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS32_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 2.930e-18 Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 1 Query: 28 EYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQR 438 ++ + + GL G+ + + IC+ VVA TA G AVLTAL + + AG+ ++QR L+ GF++G S+++T L+ TA++WGQLA C D+ RYSC +R A CAFA L++LVQL F + V R Sbjct: 8 DHEKLITAGLVT-QGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIK--RYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWR 141
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: A0A7R9U3K6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3K6_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 3.510e-14 Identity = 50/123 (40.65%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 37 RNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQ 405 RN G+ A+ L F ICACVV+ TA AG A TAL + + I + G AL LVG M + F+TA++WGQLA C+ ++ YSC+ R A CAFAVL++L Q Sbjct: 34 RNRTNGVIALQSLFAFCFFICACVVSSTANAGFNAFTTALLNIIFCVVMIRAINFGRNALLSNVLVGVGYTMMLMNFQTAIFWGQLADCEKVKEEIP--GYSCSTRSAYGATCAFAVLLFLAQ 154
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: A0A7S2S6Q8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6Q8_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.860e-9 Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 1 Query: 34 VRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRG-PAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQ 405 V +L+G A L T F ICACV A TA G V T+ A I ++ R L GFL+G S L+ +TA++WGQLA CD ++ L++YSC++ A + CAFA L++++Q Sbjct: 22 VLKLLLGAHA---LFTGCFFICACVAAKTANMGFNVVFTSFCFGFHVAVGILVIHRSLHTQLWVGFLLGLSGATAWLSLQTAIFWGQLADCDRHAHH--LSQYSCSNVSAYKAVCAFAALLFILQ 141
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: A0A5D6XQJ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQJ5_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 3.010e-5 Identity = 26/59 (44.07%), Postives = 43/59 (72.88%), Query Frame = 1 Query: 130 GAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCD 306 G A +TA AL+A+ ++ L+ + P+A + G++VG+SL++ ALTFE A+YWG +AQ + Sbjct: 39 GFDAFVTAGALVAYAFSTVVLLNKAPSAYAIGYVVGSSLLVLALTFEGALYWGLVAQAN 97 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18649 ID=mRNA_18649|Name=jgi.p|Trimin1|150813|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=447bp|location=Sequence derived from alignment at Contig_314:25565..26011- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGTTCCAGGAGAAGAAGCACGAGCCCGAGTACGTGCGCAACGTGCTCATback to top protein sequence of jgi.p|Trimin1|150813 >Trimin1|150813|gw1.314.8.1 ID=Trimin1|150813|gw1.314.8.1|Name=jgi.p|Trimin1|150813|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=149bp QFQEKKHEPEYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTback to top mRNA from alignment at Contig_314:25565..26011- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18649 ID=mRNA_18649|Name=jgi.p|Trimin1|150813|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=447bp|location=Sequence derived from alignment at Contig_314:25565..26011- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_314:25565..26011- >mRNA_18649 ID=mRNA_18649|Name=jgi.p|Trimin1|150813|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=447bp|location=Sequence derived from alignment at Contig_314:25565..26011- (Tribonema minus UTEX_B_3156 )back to top |