mRNA_18649 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150813
Unique NamemRNA_18649
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: A0A835Z3N9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N9_9STRA)

HSP 1 Score: 280 bits (716), Expect = 3.370e-95
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1
Query:    1 QFQEKKHEPEYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL 447
            QFQEKKHEPEYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL
Sbjct:    1 QFQEKKHEPEYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL 149          
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: D7FPE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPE0_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 5.450e-38
Identity = 78/150 (52.00%), Postives = 103/150 (68.67%), Query Frame = 1
Query:    1 QFQEKKHEPEYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDT-YSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL 447
            +F EK+ EP+Y+RNVL GL+ IM + T  F ICA VVA    AG   VLT L L  WE G++ L++RGP   S GFL+G +LV+  +T  TA+YWGQLA CD+ Y GD    +YSC+++ AMRG  AFA +IW++QLPF+ L V +R VL
Sbjct:   15 EFFEKQDEPQYMRNVLSGLSGIMLVFTAAFFICALVVASIDNAGFDVVLTGLLLCVWEVGAMWLLKRGPHDTSLGFLIGVTLVLNVITLMTAIYWGQLAGCDSDYDGDYD--QYSCSNKSAMRGVAAFASIIWVLQLPFIYLLVQRRGVL 162          
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: A0A7S2V692_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V692_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.700e-20
Identity = 52/126 (41.27%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   28 EYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQ 405
            ++ +  L G+ A  G+LT  + IC+ VVA TA AG  AVLT L    +  G+  ++ +   ALS GFL+G S ++  L+ ETA+YWGQLA C+T S  ++  +YSC+++   R  CAFA L++++Q
Sbjct:    8 DHTKATLFGIGA-HGVLTACYLICSFVVASTANAGFNAVLTGLVYAVYCVGAYQVLHKSKTALSVGFLIGFSALLIVLSLETAIYWGQLANCETVSESIS--QYSCSNKSGYRAVCAFASLLFILQ 130          
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: W7TS32_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS32_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.930e-18
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   28 EYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQR 438
            ++ + +  GL    G+  + + IC+ VVA TA  G  AVLTAL  + + AG+  ++QR    L+ GF++G S+++T L+  TA++WGQLA C     D+   RYSC +R A    CAFA L++LVQL F +  V  R
Sbjct:    8 DHEKLITAGLVT-QGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIK--RYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWR 141          
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: A0A7R9U3K6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3K6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.510e-14
Identity = 50/123 (40.65%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   37 RNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQ 405
            RN   G+ A+  L    F ICACVV+ TA AG  A  TAL  + +    I  +  G  AL    LVG    M  + F+TA++WGQLA C+    ++    YSC+ R A    CAFAVL++L Q
Sbjct:   34 RNRTNGVIALQSLFAFCFFICACVVSSTANAGFNAFTTALLNIIFCVVMIRAINFGRNALLSNVLVGVGYTMMLMNFQTAIFWGQLADCEKVKEEIP--GYSCSTRSAYGATCAFAVLLFLAQ 154          
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: A0A7S2S6Q8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6Q8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.860e-9
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   34 VRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLTALALLAWEAGSIALMQRG-PAALSQGFLVGASLVMTALTFETAVYWGQLAQCDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQ 405
            V  +L+G  A   L T  F ICACV A TA  G   V T+       A  I ++ R     L  GFL+G S     L+ +TA++WGQLA CD ++    L++YSC++  A +  CAFA L++++Q
Sbjct:   22 VLKLLLGAHA---LFTGCFFICACVAAKTANMGFNVVFTSFCFGFHVAVGILVIHRSLHTQLWVGFLLGLSGATAWLSLQTAIFWGQLADCDRHAHH--LSQYSCSNVSAYKAVCAFAALLFILQ 141          
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Match: A0A5D6XQJ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQJ5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.010e-5
Identity = 26/59 (44.07%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  130 GAGAVLTALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQCD 306
            G  A +TA AL+A+   ++ L+ + P+A + G++VG+SL++ ALTFE A+YWG +AQ +
Sbjct:   39 GFDAFVTAGALVAYAFSTVVLLNKAPSAYAIGYVVGSSLLVLALTFEGALYWGLVAQAN 97          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150813 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z3N9_9STRA3.370e-95100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FPE0_ECTSI5.450e-3852.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V692_9STRA4.700e-2041.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TS32_9STRA2.930e-1840.15Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7R9U3K6_9STRA3.510e-1440.65Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2S6Q8_9STRA1.860e-938.40Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5D6XQJ5_9STRA3.010e-544.07Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_314contigContig_314:25565..26011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150813|gw1.314.8.1
Descriptionfunction. Source PGD
COG categoryS
Max annot lvl121069|Pythiales
EggNOG OGs2BD89@1|root,2S120@2759|Eukaryota,1MGS5@121069|Pythiales
Evalue0.000129
Seed ortholog65071.PYU1_T004035
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004580.1
TranscriptId151135
TrackFilteredModels1
ProteinId150813
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150813gene_18649Tribonema minus UTEX_B_3156 geneContig_314 25565..26011 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18649_1exon_18649_1Tribonema minus UTEX_B_3156 exonContig_314 25565..26011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18649CDS_18649Tribonema minus UTEX_B_3156 CDSContig_314 25565..26011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150813Trimin1|150813|gw1.314.8.1Tribonema minus UTEX_B_3156 polypeptideContig_314 25565..26011 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18649 ID=mRNA_18649|Name=jgi.p|Trimin1|150813|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=447bp|location=Sequence derived from alignment at Contig_314:25565..26011- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGTTCCAGGAGAAGAAGCACGAGCCCGAGTACGTGCGCAACGTGCTCAT
AGGGCTCGCGGCGATCATGGGCCTGCTCACGGTGCCGTTCGCCATCTGCG
CGTGCGTCGTCGCGGGCACCGCCGCCGCGGGCGCCGGCGCCGTCCTCACC
GCGCTCGCGCTCCTCGCGTGGGAGGCGGGGTCCATCGCGCTCATGCAGCG
CGGCCCCGCGGCGCTGTCGCAGGGCTTCCTCGTGGGCGCGTCGCTCGTGA
TGACGGCGCTCACCTTCGAGACGGCCGTCTACTGGGGGCAGCTCGCGCAG
TGCGATACATATAGCGGCGACGTGGCGCTCGCGCGCTACTCGTGCGCGCA
CCGCGGCGCCATGCGCGGCGCGTGCGCCTTCGCCGTCCTCATCTGGCTCG
TGCAGCTGCCGTTCGTCGCGCTCGCCGTCGCGCAGCGCCACGTCCTC
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protein sequence of jgi.p|Trimin1|150813

>Trimin1|150813|gw1.314.8.1 ID=Trimin1|150813|gw1.314.8.1|Name=jgi.p|Trimin1|150813|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=149bp
QFQEKKHEPEYVRNVLIGLAAIMGLLTVPFAICACVVAGTAAAGAGAVLT
ALALLAWEAGSIALMQRGPAALSQGFLVGASLVMTALTFETAVYWGQLAQ
CDTYSGDVALARYSCAHRGAMRGACAFAVLIWLVQLPFVALAVAQRHVL
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mRNA from alignment at Contig_314:25565..26011-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18649 ID=mRNA_18649|Name=jgi.p|Trimin1|150813|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=447bp|location=Sequence derived from alignment at Contig_314:25565..26011- (Tribonema minus UTEX_B_3156 )
CAGTTCCAGGAGAAGAAGCACGAGCCCGAGTACGTGCGCAACGTGCTCAT AGGGCTCGCGGCGATCATGGGCCTGCTCACGGTGCCGTTCGCCATCTGCG CGTGCGTCGTCGCGGGCACCGCCGCCGCGGGCGCCGGCGCCGTCCTCACC GCGCTCGCGCTCCTCGCGTGGGAGGCGGGGTCCATCGCGCTCATGCAGCG CGGCCCCGCGGCGCTGTCGCAGGGCTTCCTCGTGGGCGCGTCGCTCGTGA TGACGGCGCTCACCTTCGAGACGGCCGTCTACTGGGGGCAGCTCGCGCAG TGCGATACATATAGCGGCGACGTGGCGCTCGCGCGCTACTCGTGCGCGCA CCGCGGCGCCATGCGCGGCGCGTGCGCCTTCGCCGTCCTCATCTGGCTCG TGCAGCTGCCGTTCGTCGCGCTCGCCGTCGCGCAGCGCCACGTCCTC
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Coding sequence (CDS) from alignment at Contig_314:25565..26011-

>mRNA_18649 ID=mRNA_18649|Name=jgi.p|Trimin1|150813|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=447bp|location=Sequence derived from alignment at Contig_314:25565..26011- (Tribonema minus UTEX_B_3156 )
CAGTTCCAGGAGAAGAAGCACGAGCCCGAGTACGTGCGCAACGTGCTCAT
AGGGCTCGCGGCGATCATGGGCCTGCTCACGGTGCCGTTCGCCATCTGCG
CGTGCGTCGTCGCGGGCACCGCCGCCGCGGGCGCCGGCGCCGTCCTCACC
GCGCTCGCGCTCCTCGCGTGGGAGGCGGGGTCCATCGCGCTCATGCAGCG
CGGCCCCGCGGCGCTGTCGCAGGGCTTCCTCGTGGGCGCGTCGCTCGTGA
TGACGGCGCTCACCTTCGAGACGGCCGTCTACTGGGGGCAGCTCGCGCAG
TGCGATACATATAGCGGCGACGTGGCGCTCGCGCGCTACTCGTGCGCGCA
CCGCGGCGCCATGCGCGGCGCGTGCGCCTTCGCCGTCCTCATCTGGCTCG
TGCAGCTGCCGTTCGTCGCGCTCGCCGTCGCGCAGCGCCACGTCCTC
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