mRNA_18593 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Match: A0A835YYA1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA1_9STRA) HSP 1 Score: 1132 bits (2928), Expect = 0.000e+0 Identity = 625/625 (100.00%), Postives = 625/625 (100.00%), Query Frame = 1
Query: 1 MALRGGXXXXXXXXXXXXXXXXPDIVTLFPQSLTLGEIMGERDAATGDWREGVLPALLPRAGAGAHDSARYTWLVINTDMSYGPCLLLPALDAAAARRKLPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQVTPAALVRTWSATAFLSLLLPSVAWELTELLEHHLDAGIAHRRRRHRPPATPLPRTILALLGAVLRAXXXXXXXXXXXXXXXXXXXXXXXXXXRAPKPSARTRLAFTWCYAWGLGGGLREAAQRRRSCFTPWGAVAGAGAARPLLPLGGGGAVYGGAALFVLTVESMRKAHMMRLLARGGGDGDGGRALLLAGEAACGKAPSPWLGDAVPAVLGAAQGRRALDFVDNVALPRVGVGGGGDRAXXXXXXXAASAPRDEGRAGGVHTAQAILDEEQLKHPAIVNTETTAVNGGINGGDDACHSSPATLVTHAAYLTSLTRRSPLCCLNFLPTVSKYSFHTASFLVLQLQACPSTEAAVQQLGGSWRPGEMEGAKANFQKAFASWRTGRSQGEIPGCSGDTWRVEGAASLLCSTDGVRCAGLQRRLKTLWLQSGGEVGHHQIPHASRGDTVALQETVVGRCATLDEEQRWPPCRSLSCNKKSLYP 1875
MALRGGXXXXXXXXXXXXXXXXPDIVTLFPQSLTLGEIMGERDAATGDWREGVLPALLPRAGAGAHDSARYTWLVINTDMSYGPCLLLPALDAAAARRKLPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQVTPAALVRTWSATAFLSLLLPSVAWELTELLEHHLDAGIAHRRRRHRPPATPLPRTILALLGAVLRAXXXXXXXXXXXXXXXXXXXXXXXXXXRAPKPSARTRLAFTWCYAWGLGGGLREAAQRRRSCFTPWGAVAGAGAARPLLPLGGGGAVYGGAALFVLTVESMRKAHMMRLLARGGGDGDGGRALLLAGEAACGKAPSPWLGDAVPAVLGAAQGRRALDFVDNVALPRVGVGGGGDRAXXXXXXXAASAPRDEGRAGGVHTAQAILDEEQLKHPAIVNTETTAVNGGINGGDDACHSSPATLVTHAAYLTSLTRRSPLCCLNFLPTVSKYSFHTASFLVLQLQACPSTEAAVQQLGGSWRPGEMEGAKANFQKAFASWRTGRSQGEIPGCSGDTWRVEGAASLLCSTDGVRCAGLQRRLKTLWLQSGGEVGHHQIPHASRGDTVALQETVVGRCATLDEEQRWPPCRSLSCNKKSLYP
Sbjct: 1 MALRGGXXXXXXXXXXXXXXXXPDIVTLFPQSLTLGEIMGERDAATGDWREGVLPALLPRAGAGAHDSARYTWLVINTDMSYGPCLLLPALDAAAARRKLPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQVTPAALVRTWSATAFLSLLLPSVAWELTELLEHHLDAGIAHRRRRHRPPATPLPRTILALLGAVLRAXXXXXXXXXXXXXXXXXXXXXXXXXXRAPKPSARTRLAFTWCYAWGLGGGLREAAQRRRSCFTPWGAVAGAGAARPLLPLGGGGAVYGGAALFVLTVESMRKAHMMRLLARGGGDGDGGRALLLAGEAACGKAPSPWLGDAVPAVLGAAQGRRALDFVDNVALPRVGVGGGGDRAXXXXXXXAASAPRDEGRAGGVHTAQAILDEEQLKHPAIVNTETTAVNGGINGGDDACHSSPATLVTHAAYLTSLTRRSPLCCLNFLPTVSKYSFHTASFLVLQLQACPSTEAAVQQLGGSWRPGEMEGAKANFQKAFASWRTGRSQGEIPGCSGDTWRVEGAASLLCSTDGVRCAGLQRRLKTLWLQSGGEVGHHQIPHASRGDTVALQETVVGRCATLDEEQRWPPCRSLSCNKKSLYP 625
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Match: A0A835Z1Q4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q4_9STRA) HSP 1 Score: 380 bits (977), Expect = 3.460e-112 Identity = 293/519 (56.45%), Postives = 312/519 (60.12%), Query Frame = 1
Query: 67 PDIVTLFPQSLTLGEIMGERDAATGDWREGVLPALLPRAGAGAHDSA----RYTWLVINTDMSYGPC----LLLPALDAAAA----------RRKLPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQ--VTPAALVRTWSATAFLSLLLPSVAWELTELLEHHLDAGIAHRRRR-----------HRPPATP--------LPRTILALLGAVLRAXXXXXXXXXXXXXXXXXXXXXXXXXXRA---PKPSARTRLAFTWCYAWGLGGGLREAAQ---------RRR--------------SC---------FTPWGAVAGAGAARPLLPLGGGGAVYGGAALFVLTVESMRKAHMMRLLARGGGDGDGGRALLLAGEAACGK-----------APSPWLGDAVPAV------------------------LGAAQGRRALDFVDNVALPRVGVGGGGDRAXXXXXXXAASAPRDEGR----AGGVHTAQAILDEEQLKHPAIVNTET 1284
P+IV LFPQSLTL E+MGERD ATGDWREGVLPALL RAGAGAHDSA R TWLVI+TDMSYGPC LLLPAL+ +AA RR+LPLGSLERLRLPAALRVVFEAGDIG ASPAFVSRC LVRM QDQ VTPAALVRTWS TA LL PSVAWELTELLE HLDAGIAH R R P A L R++LALLGAVLR XXXXXXXXXXXXX P PSA RLAF WCYAWGLGGGLREAA+ R R C FTPWGAVAGAGAARPLLPLGG ALFV TVES RKAHM+RLLARGGG GRALLLAGEAACGK A W A+ LGAAQGRRAL FVD+VALPR GG XXXXXXX SAPR+ R GG H Q LD +++ +++ T
Sbjct: 843 PNIVMLFPQSLTLSELMGERDVATGDWREGVLPALLRRAGAGAHDSAVPPDRDTWLVIDTDMSYGPCRCVDLLLPALETSAAGXXXXXXXXXRRELPLGSLERLRLPAALRVVFEAGDIGGASPAFVSRCGLVRMTQDQDQVTPAALVRTWSVTALPLLLPPSVAWELTELLERHLDAGIAHVRERCCXXXXXXXXXXVPTAAGDASVSPAHLTRSVLALLGAVLRVAALHGAADAATPAXXXXXXXXXXXXXXXXXXPNPSALARLAFAWCYAWGLGGGLREAARAAFEEWARDRLRPLVGTASPFLRDLFGCALDAGGSGEFTPWGAVAGAGAARPLLPLGGX--XXXAVALFVPTVESTRKAHMLRLLARGGG----GRALLLAGEAACGKTSIAMSALTGAAEEGWATPCAVALAGASSAADARRALAGGLVHKGRSLLGAAQGRRALVFVDDVALPR----GGXXXXXXXXXXXXXSAPRELLRELLSTGGYHDPQR-LDFKRIDQLSLIAAAT 1350
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Match: A0A836CNF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNF8_9STRA) HSP 1 Score: 144 bits (363), Expect = 7.480e-37 Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 1
Query: 1465 LQACPSTEAAVQQLGGSWRPGEMEGAKANFQKAFASWRTGRSQGEIPGCSGDTWRVEGAASLLCSTDGVRCAGL 1686
L AC TEAAVQQLGGSWRPG+MEG KANFQKAFASWRTGRSQGEIPGC GDTWRVEGAASLLCSTDGVRCAG+
Sbjct: 72 LSACVHTEAAVQQLGGSWRPGKMEGGKANFQKAFASWRTGRSQGEIPGCGGDTWRVEGAASLLCSTDGVRCAGV 145
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Match: D7FN30_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN30_ECTSI) HSP 1 Score: 105 bits (261), Expect = 1.640e-19 Identity = 73/246 (29.67%), Postives = 118/246 (47.97%), Query Frame = 1
Query: 70 DIVTLFPQSLTLGEIMGERDAATGDWREGVLPALLPRA-GAGAHDSARYTWLVINTDMSYGPCLLLPALDAAAARRK-LPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQVTPAALVRTWSATAFLSLLLPSVAWELTELLEHHLDAGIAH--RRRRHRPPATP--LPRTILALLGAVLRAXXXXXXXXXXXXXXXXXXXXXXXXXXRAPKPSARTRLAFTWCYAWGLGGGLRE 789
D + L P+S+T GE+ GE + T +W +G++P ++ + AG S W++ + + + + ++ K L L + ER++LP L ++FE D+ ASPA VSRC +V M Q V +LVR+W+ +LL +V+WEL EL+E HL+AGI + P+ P L +++L LLG +L P RL F W + W +G + +
Sbjct: 1845 DRLHLNPKSITAGELYGEFNLMTSEWTDGLVPKMVRQCVQAGTEGSDNRKWIIFDGPVD---AVWIENMNTVLDDNKTLCLANSERIKLPTTLHMMFEVQDLRVASPATVSRCGMVYMEQIHVGIRSLVRSWAIRDLPALLSDTVSWELVELIERHLEAGITFVGEECKETVPSNPHNLAQSLLNLLGCMLDPAQGFDATH--------------------PNIGTLLRLVFAWAFVWSVGANVDD 2067
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Match: A0A482S485_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S485_9ARCH) HSP 1 Score: 83.2 bits (204), Expect = 1.030e-12 Identity = 51/161 (31.68%), Postives = 87/161 (54.04%), Query Frame = 1
Query: 70 DIVTLFPQSLTLGEIMGERDAATGDWREGVLPALLPRAGAGAHD-SARYTWLVINTDMSYGPCLLLPALDAAAARRK-LPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQVTPAALVRTWSATAFLSLLLPSVAWELTELLEHHLDAGI 546
D + L P+S+T GE+ GE + T +WR+G++P L+ ++ S W++ + + + + ++ K L L + ER++LPA L ++FE D+ ASPA VSRC +V M Q V ++V+TW T +L+ A + +E HL+A +
Sbjct: 779 DRLILNPKSITAGELYGEFNLLTNEWRDGIVPKLVRECVNAVNEGSENRKWVIFDGPVD---AVWIENMNTVLDDNKTLCLANSERIKLPATLHMLFEVQDLKVASPATVSRCGMVYMEQVHVGTLSIVKTWGQTTGKALVGLKYAKSIVSFIEAHLEAAL 936
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Match: UPI000E1BD3D9 (dynein heavy chain 2, axonemal-like n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=UPI000E1BD3D9) HSP 1 Score: 80.5 bits (197), Expect = 7.460e-12 Identity = 59/134 (44.03%), Postives = 73/134 (54.48%), Query Frame = 1
Query: 76 VTLFPQSLTLGEIMGERDAATGDWREGVLPALLPRAGAGAHDSARYTWLVINTDMSYGPCLLL------PALDAAAARRKLPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQVTPAALVRTW 459
V L P +L GE+ GE D TGDW++GVL ALL A A A TWLV++ GP L PALD R LPLGS ER+ LPA + ++ E ++ ASPA VSRC +V +P P VR W
Sbjct: 1337 VVLNPAALAPGELYGEYDPDTGDWQDGVLAALLRDACAEERQEA--TWLVLD-----GPAAPLWLDALHPALDEC---RVLPLGSGERIALPAQVWLLLELEELAGASPAAVSRCGVVYVPYGGWRPH--VRAW 1458
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Match: A0A7S2QVL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVL7_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.930e-11 Identity = 69/247 (27.94%), Postives = 112/247 (45.34%), Query Frame = 1
Query: 70 DIVTLFPQSLTLGEIMGERDAATGDWREGVLPALLPRAGAGAHD-SARYTWLVINTDMSYGPCLLLPALDAAAARRK-LPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQVTPAALVRTWSATAFLSLLLPSVAWE-LTELLEHHLDAGIAHRRR----RHRPPATPLPRTILALLGAVLRAXXXXXXXXXXXXXXXXXXXXXXXXXXRAPKPSARTRLAFTWCYAWGLGGGLRE 789
D + L P+S+T GE+ GE + T +W++G++P L+ D S W+V + + + + ++ K L L + ER++LP L ++FE D+ ASPA VSRC +V M Q V +LVRTW T LS LLP+ E + ++E H+ I R + + + L ++L +L +VL PK + +L F W W +G + +
Sbjct: 269 DRLILNPKSITAGELYGEFNDMTNEWKDGIVPKLVRSVCQALVDGSDNRKWIVFDGPVD---AIWIENMNTVLDDNKTLCLANSERIKLPHTLHMMFEVQDLKVASPATVSRCGMVYMEQVHVGLLSLVRTWG-TNQLSHLLPAEQVEAVVGMIEDHVVDAIEFVREFCKEKVKSDDSNLVNSLLNMLYSVLDPSRGFHPDH--------------------PKVMSNLKLFFVWSLVWSVGANISD 491
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Match: UPI0018853842 (LOW QUALITY PROTEIN: dynein heavy chain 1, axonemal-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018853842) HSP 1 Score: 74.3 bits (181), Expect = 6.140e-10 Identity = 59/184 (32.07%), Postives = 94/184 (51.09%), Query Frame = 1
Query: 82 LFPQSLTLGEIMGERDAATGDWREGVLPALLPRAGAGAHDSARYTWLVINTDMSYGPCLLLPALDAAAA-RRKLPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQVTPAALVRTWSATAFLSLLLPSVAWELTELLEHHLDAGIAHRRRRHRPPATPLPRTILALLGAVLRA 630
L P+S+T+G++ GE D T +W +G+L +L+ R G A +SA W + + + + + ++ +KL L S E ++L A ++FE GD+ ASPA VSRC +V + + ALV +W A L + A L L + L+ GIAH R + T + + A L +L A
Sbjct: 1460 LNPKSITMGQLYGEFDDMTHEWTDGILSSLI-RMGCAA-ESADKKWYMFDGPVD---AVWIENMNTVLDDNKKLCLSSGEIIKLDATQTMMFEVGDLAQASPATVSRCGMVYLEPSGLGLPALVESWLAD--LPEQMKPHADTLRALCDAWLEPGIAHMRANTKEIVTTVDSNLCATLLRLLSA 1636
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Match: A0A0P7VPJ3_SCLFO (Dynein heavy chain 6, axonemal-like (Fragment) n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7VPJ3_SCLFO) HSP 1 Score: 73.6 bits (179), Expect = 1.070e-9 Identity = 67/242 (27.69%), Postives = 108/242 (44.63%), Query Frame = 1
Query: 82 LFPQSLTLGEIMGERDAATGDWREGVLPALLPRAGAGAHDSARYTWLVINTDMSYGP--CLLLPALDAAAARRK-LPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQVTPAALVRTWSATAFLSLLLPSVAWELTELLEHHLDAGIAHRRRRHRPPATPLPRTILALLGAVLRAXXXXXXXXXXXXXXXXXXXXXXXXXXRAPKPSARTRL---AFTWCYAWGLGGGLRE 789
L P+S+T+GE+ GE + T +WR+G++ AL RA S + W++ S GP L + ++ K L L + ER++L ++ +VFE D+ ASPA VSRC +V + DQ+ V+TW T + S+ L +L E +++ G+ +R P + + + L +L A PS + F +CY W +GG L E
Sbjct: 1830 LNPKSVTMGELYGEVNLLTLEWRDGLM-ALSVRAAVN-DTSDDHKWII-----SDGPVDALWIENMNTVLDDNKMLCLANSERIKLTPSIHMVFEVQDLAVASPATVSRCGMVYIDSDQLKWMPYVQTW-ITGLPEKVTDSMKGYLLDLFEQYVEKGLQFASKRCFQPMAQVDISKVTTLCCLLEALLLGKDGLQFNMD-----------------PSRLNTILCQTFVFCYLWSVGGNLAE 2046
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Match: A0A8C9R835_SCLFO (Dynein axonemal heavy chain 6 n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9R835_SCLFO) HSP 1 Score: 72.8 bits (177), Expect = 1.840e-9 Identity = 65/239 (27.20%), Postives = 105/239 (43.93%), Query Frame = 1
Query: 82 LFPQSLTLGEIMGERDAATGDWREGVLPALLPRAGAGAHDSARYTWLVINTDMSYGP--CLLLPALDAAAARRK-LPLGSLERLRLPAALRVVFEAGDIGDASPAFVSRCALVRMPQDQVTPAALVRTWSATAFLSLLLPSVAWELTELLEHHLDAGIAHRRRRHRPPATPLPRTILALLGAVLRAXXXXXXXXXXXXXXXXXXXXXXXXXXRAPKPSARTRLAFTWCYAWGLGGGLRE 789
L P+S+T+GE+ GE + T +WR+G++ AL RA S + W++ S GP L + ++ K L L + ER++L ++ +VFE D+ ASPA VSRC +V + DQ+ V+TW T + S+ L +L E +++ G+ +R P + + + L +L A F +CY W +GG L E
Sbjct: 1714 LNPKSVTMGELYGEVNLLTLEWRDGLM-ALSVRAAVN-DTSDDHKWII-----SDGPVDALWIENMNTVLDDNKMLCLANSERIKLTPSIHMVFEVQDLAVASPATVSRCGMVYIDSDQLKWMPYVQTW-ITGLPEKVTDSMKGYLLDLFEQYVEKGLQFASKRCFQPMAQVDISKVTTLCCLLEALLLGKDGLQLNTILCQ---------------------TFVFCYLWSVGGNLAE 1923 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354549 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18593 ID=mRNA_18593|Name=jgi.p|Trimin1|354549|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1876bp|location=Sequence derived from alignment at Contig_267:80143..86047+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGCTGCGTGGCGGCGGCAGTGGCGGCAGCGGCGGCGGCGGCAGCAGback to top protein sequence of jgi.p|Trimin1|354549 >Trimin1|354549|estExt_Genemark1.C_Ctg_2670011 ID=Trimin1|354549|estExt_Genemark1.C_Ctg_2670011|Name=jgi.p|Trimin1|354549|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=625bp MALRGGGSGGSGGGGSSSSGGGPDIVTLFPQSLTLGEIMGERDAATGDWRback to top mRNA from alignment at Contig_267:80143..86047+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18593 ID=mRNA_18593|Name=jgi.p|Trimin1|354549|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5905bp|location=Sequence derived from alignment at Contig_267:80143..86047+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_267:80143..86047+ >mRNA_18593 ID=mRNA_18593|Name=jgi.p|Trimin1|354549|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1875bp|location=Sequence derived from alignment at Contig_267:80143..86047+ (Tribonema minus UTEX_B_3156 )back to top |