mRNA_18587 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140801
Unique NamemRNA_18587
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Match: A0A835YND3_9STRA (SET domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND3_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.300e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1
Query:    1 MLNHSCIPNVALCFSFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210
            MLNHSCIPNVALCFSFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC
Sbjct:  141 MLNHSCIPNVALCFSFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210          
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Match: A0A1C7LSN3_GRIFR (SET domain-containing protein 5 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7LSN3_GRIFR)

HSP 1 Score: 70.1 bits (170), Expect = 2.050e-12
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    4 LNHSCIPNVALCFSFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210
            LNHSC PNVA  +    +     +TFRALR+ISAGEELC +YVD+  T AQR   L+ A+ F C C  C
Sbjct:  331 LNHSCAPNVARSW----DSCARTMTFRALRDISAGEELCVNYVDVLGTRAQRAEELKGAFGFLCACEEC 395          
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Match: C5LCK8_PERM5 (SET domain-containing protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LCK8_PERM5)

HSP 1 Score: 66.2 bits (160), Expect = 3.690e-12
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 MLNHSCIPNVALCFSFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210
            + NHSC PNV   F  G+      L+FRA+R+IS GEE+C+SYV+L   + +RR +L   Y F C C RC
Sbjct:   67 LFNHSCHPNVIPAFGHGS-----TLSFRAIRDISPGEEICHSYVELTLPSWKRRDVLLRDYEFLCECERC 131          
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Match: K0SA77_THAOC (SET domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SA77_THAOC)

HSP 1 Score: 67.0 bits (162), Expect = 2.530e-11
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 MLNHSCIPNVALCFSFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210
            +LNHSC PN  L +  G E + P L   A ++IS+GEEL +SYVDL   T  RR+ L+  + F C C RC
Sbjct:  486 LLNHSCSPNCILRYKIGLESSPPQLEIVACKDISSGEELVHSYVDLVLPTETRRNRLRDTHGFICECKRC 555          
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Match: A0A060SFF0_PYCCI (SET domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SFF0_PYCCI)

HSP 1 Score: 66.2 bits (160), Expect = 4.330e-11
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    4 LNHSCIPNVALCFSFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210
            LNHSC PNV   +    +     +TFRALR+I  GEELC +YVD+  T AQR   L+ A+ F C CV C
Sbjct:  192 LNHSCQPNVERSWDESAQR----MTFRALRDIVEGEELCMNYVDVLGTRAQRMEELRTAFGFECACVAC 256          
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Match: A0A482R4M8_9EURY (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R4M8_9EURY)

HSP 1 Score: 66.2 bits (160), Expect = 4.700e-11
Identity = 37/84 (44.05%), Postives = 43/84 (51.19%), Query Frame = 1
Query:    1 MLNHSCIPNVALCFSFGTEHNVPVL--------------TFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210
            +LNHSC PN    +   T   V  L               FR  R +SAGE+LC+SYV+L  T  QRRH LQ AY FTC C  C
Sbjct:  246 LLNHSCAPNCVPMYLPSTHPEVVALQAKDMPPLVAPLVQVFRTTRAVSAGEQLCHSYVELAATQQQRRHELQDAYGFTCCCTVC 329          
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Match: A0A1Y2IX37_PYCCO (SET domain-containing protein n=1 Tax=Trametes coccinea BRFM310 TaxID=1353009 RepID=A0A1Y2IX37_PYCCO)

HSP 1 Score: 65.5 bits (158), Expect = 8.140e-11
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    4 LNHSCIPNVALCFSFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210
            LNHSC PNVA  +    +     +TFRALR+I  GEELC +YVD+  T AQR   L+ A+ F C C  C
Sbjct:  192 LNHSCQPNVARSWDECAQR----MTFRALRDIGEGEELCMNYVDVLGTRAQRMEELRTAFGFECACEAC 256          
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Match: F2U089_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U089_SALR5)

HSP 1 Score: 65.1 bits (157), Expect = 1.170e-10
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    7 NHSCIPNVALCF---SFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210
            NHSC PN        S     N P +  RA+ +I+ GEE+C SY++L  TT +RR  LQ  Y+FTC C RC
Sbjct:  183 NHSCRPNACQYIDPNSTRARLNSPSIVLRAVSDIAEGEEVCISYIELMDTTPERREALQELYYFTCQCPRC 253          
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Match: A0A2I4CST8_9TELE (histone-lysine N-methyltransferase SMYD1 n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CST8_9TELE)

HSP 1 Score: 64.7 bits (156), Expect = 1.620e-10
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    1 MLNHSCIPNVALCFSFGTE-------HNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210
            ++NH C PN  + F+ G +       H+   +  RALRNIS GEEL +SY+D    +A R+  L+  +HF C C RC
Sbjct:  200 LVNHDCWPNCTVTFNHGNQSAVSSALHSKMRMELRALRNISKGEELTFSYMDPLNLSADRQKQLKERFHFDCSCERC 276          
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Match: F6RQ08_CIOIN (Histone-lysine N-methyltransferase SMYD3 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6RQ08_CIOIN)

HSP 1 Score: 63.9 bits (154), Expect = 2.990e-10
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    4 LNHSCIPNVALCFSFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTTAQRRHMLQAAYHFTCGCVRC 210
            +NHSC PN         E N+  L  RA++NI+AGEE+  SYVDL+ T+ +R+  L + YHF C C  C
Sbjct:  204 INHSCEPNCV------AEFNMRTLKIRAVKNITAGEEVLISYVDLFATSFERQRELMSIYHFQCTCHSC 266          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140801 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YND3_9STRA3.300e-42100.00SET domain-containing protein n=2 Tax=Tribonema mi... [more]
A0A1C7LSN3_GRIFR2.050e-1252.17SET domain-containing protein 5 n=1 Tax=Grifola fr... [more]
C5LCK8_PERM53.690e-1247.14SET domain-containing protein (Fragment) n=1 Tax=P... [more]
K0SA77_THAOC2.530e-1147.14SET domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A060SFF0_PYCCI4.330e-1149.28SET domain-containing protein n=1 Tax=Pycnoporus c... [more]
A0A482R4M8_9EURY4.700e-1144.05SET domain-containing protein-lysine N-methyltrans... [more]
A0A1Y2IX37_PYCCO8.140e-1149.28SET domain-containing protein n=1 Tax=Trametes coc... [more]
F2U089_SALR51.170e-1045.07Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A2I4CST8_9TELE1.620e-1040.26histone-lysine N-methyltransferase SMYD1 n=1 Tax=A... [more]
F6RQ08_CIOIN2.990e-1044.93Histone-lysine N-methyltransferase SMYD3 n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_267contigContig_267:9040..9640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140801|gw1.267.7.1
BRITEko00000,ko00001,ko03029,ko03036,ko04131
KEGG Pathwayko04137,ko04140,map04137,map04140
KEGG koko:K11426,ko:K17985
Descriptionmethyltransferase activity
COG categoryE
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2940@1|root,KOG2084@2759|Eukaryota
Evalue4.14e-12
Seed ortholog159749.K0SA77
Hectar predicted targeting categoryother localisation
TranscriptId141123
TrackFilteredModels1
ProteinId140801
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140801gene_18587Tribonema minus UTEX_B_3156 geneContig_267 9040..9640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140801Trimin1|140801|gw1.267.7.1Tribonema minus UTEX_B_3156 polypeptideContig_267 9040..9640 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18587_2exon_18587_2Tribonema minus UTEX_B_3156 exonContig_267 9040..9166 -
exon_18587_1exon_18587_1Tribonema minus UTEX_B_3156 exonContig_267 9558..9640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18587CDS_18587Tribonema minus UTEX_B_3156 CDSContig_267 9558..9640 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18587 ID=mRNA_18587|Name=jgi.p|Trimin1|140801|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_267:9040..9640- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAACCACTCCTGCATCCCCAATGTGGCGCTGTGTTTCAGCTTTGG
CACGGAACACAACGTACCAGTGCTGACGTTCAGGGCACTGAGGAACATCA
GTGCCGGCGAGGAACTGTGCTATTCTTACGTGGACCTCTACCAGACCACA
GCTCAGCGGAGGCACATGCTGCAAGCCGCATACCACTTCACATGTGGTTG
CGTCCGGTGC
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protein sequence of jgi.p|Trimin1|140801

>Trimin1|140801|gw1.267.7.1 ID=Trimin1|140801|gw1.267.7.1|Name=jgi.p|Trimin1|140801|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=70bp
MLNHSCIPNVALCFSFGTEHNVPVLTFRALRNISAGEELCYSYVDLYQTT
AQRRHMLQAAYHFTCGCVRC
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mRNA from alignment at Contig_267:9040..9640-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18587 ID=mRNA_18587|Name=jgi.p|Trimin1|140801|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=601bp|location=Sequence derived from alignment at Contig_267:9040..9640- (Tribonema minus UTEX_B_3156 )
ATGCTGAACCACTCCTGCATCCCCAATGTGGCGCTGTGTTTCAGCTTTGG CACGGAACACAACGTACCAGTGCTGACGTTCAGGTGTGTGATTGTGGCAA TGATTGCTTTCGTAGACACTCCGTATGAGCGCATTGCGAACATTGCACCA GCATGTAGAGATCCACGATGTCTACCTCAATGCGCTGTCTGCAAGAAGCT GTTTGATTGCATAATGAATGCAGTGTCGTGTCCCATTGCACAATGATGTC CCATTGCACAATGAATGCAGTGCCCTGTCACATTGATTTCTGTATTTTGC CATACTGAAAGCTTGTAGGTATTGGTATGTTAATTGACGATGCCGTAAAG CTGCTCAACAGCGCATGAGTGTGGCCGCAGTTTATTGATATGAGGCTTGT TCGAGTGCAGTGTAGCGGACTTTAATCTGCTTGCATGTTCCTCAGTTGTG TGTCCTTGAACACCCGCGATACAGGGCACTGAGGAACATCAGTGCCGGCG AGGAACTGTGCTATTCTTACGTGGACCTCTACCAGACCACAGCTCAGCGG AGGCACATGCTGCAAGCCGCATACCACTTCACATGTGGTTGCGTCCGGTG C
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Coding sequence (CDS) from alignment at Contig_267:9040..9640-

>mRNA_18587 ID=mRNA_18587|Name=jgi.p|Trimin1|140801|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=210bp|location=Sequence derived from alignment at Contig_267:9040..9640- (Tribonema minus UTEX_B_3156 )
ATGCTGAACCACTCCTGCATCCCCAATGTGGCGCTGTGTTTCAGCTTTGG
CACGGAACACAACGTACCAGTGCTGACGTTCAGGGCACTGAGGAACATCA
GTGCCGGCGAGGAACTGTGCTATTCTTACGTGGACCTCTACCAGACCACA
GCTCAGCGGAGGCACATGCTGCAAGCCGCATACCACTTCACATGTGGTTG
CGTCCGGTGC
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