mRNA_1855 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132248
Unique NamemRNA_1855
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A835Z068_9STRA (Cysteamine dioxygenase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z068_9STRA)

HSP 1 Score: 247 bits (630), Expect = 4.040e-83
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1
Query:    1 MTFVPLHSRAATYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVDRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQGCTFLEVLIPAYDDDAHRCTYFKVVS 351
            MTFVPLHSRAATYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVDRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQGCTFLEVLIPAYDDDAHRCTYFKVVS
Sbjct:    1 MTFVPLHSRAATYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVDRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQGCTFLEVLIPAYDDDAHRCTYFKVVS 117          
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A6A3TW72_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TW72_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.230e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWV-DV--DRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYD-DDAHRCTYFKVVS 351
            T+++G+F+LPP  ++PLHDH GM+V+SRVL G   + S D V DV  ++H A     E++  P    +LPD  N+H+++ G   GC FL+++ P YD +D   CTY++VVS
Sbjct:  124 TFSIGIFILPPGVSIPLHDHPGMSVISRVLYGSLHIKSFDLVADVGGNKHTARLQADEVLTAPHTTELLPDCGNLHQLMGGEDVGCAFLDIITPPYDSNDGRDCTYYRVVS 234          
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A225V3G5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V3G5_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.470e-21
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVD------RHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYDDDAHR-CTYFKVV 348
            T+++G+F+LPP   +PLHDH GM+VV+R+L G   V S D V +D      R +A     E+V  P    +LPD  N+H++V G   GC F +++ P YD +  R CTYF+VV
Sbjct:   93 TFSIGIFILPPGVAIPLHDHPGMSVVTRLLYGSLHVKSYDLVQIDAAPLGKRQMARIRADEVVTAPHTAELLPDCGNLHELVGGDDVGCAFFDIITPPYDANEGRDCTYFRVV 205          
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A2P4Y2Z7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2Z7_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.300e-21
Identity = 44/114 (38.60%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVD------RHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYD-DDAHRCTYFKVVS 351
            T+++G+F+LPP  ++PLHDH GM+V+SR+L G   + S D V         +H A     E+V  P    +LPD+ N+H++V G   GC F++++ P YD +D   CTY++V++
Sbjct:   91 TFSIGIFILPPGVSIPLHDHPGMSVISRLLYGSLHIKSYDLVKDGAVPVGKKHKARLQADEIVVAPHTAELLPDYGNLHELVGGEDIGCAFVDIITPPYDANDGRDCTYYRVIA 204          
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: G4YJZ4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YJZ4_PHYSP)

HSP 1 Score: 92.4 bits (228), Expect = 1.520e-20
Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 1
Query:   34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVD-------VDRHIASAITT-EMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYD-DDAHRCTYFKVV 348
            T+++G+F+LPP A++PLHDH GMTVVSR+L G   + S D V        V + + + +   E++  P    +LPD  N+H +V G   GC FL+++ P YD +D   CTYF+VV
Sbjct:   95 TFSIGIFILPPGASIPLHDHPGMTVVSRMLYGSLHIKSYDLVKDGATTAAVGKKVTARLQADEVLTAPHTTELLPDCGNLHHLVGGDDTGCAFLDIITPPYDSNDGRDCTYFRVV 209          
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A5D6Y5D8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5D8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.850e-20
Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   37 YAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVDRHIASAITT--------EMVHPPACHVVLPDHKNIHKIVAG-AQGCTFLEVLIPAYD-DDAHRCTYFKVV 348
            +++G+F+LPP A++PLHDH  M+V+SRVL G   V S D V       SA           E +H P    +LPDH N+H+ VAG A GC   ++L P Y+ DD   CTY++VV
Sbjct:  111 FSMGIFILPPGASIPLHDHPEMSVISRVLYGSLHVRSCDLVAGSPARTSAAAPLMARVCADEEIHAPHTAELLPDHGNLHEFVAGDALGCAIFDILTPPYEPDDGRDCTYYRVV 224          
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A329RUH3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RUH3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.560e-20
Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWV------DVDRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYDDDAHR-CTYFKVV 348
            T+++G+F+LPP  ++PLHDH GM+V+SRVL G   + S D +         +  A     E++  P    +LPD+ N+H+I+A    GC FL+++ P YD +  R CTYF+VV
Sbjct:   94 TFSIGIFILPPGVSIPLHDHPGMSVISRVLYGSLHIKSYDLIKDGAVPSGKKQRAILRVDEVITAPYTTELLPDYGNLHEIIADDDVGCAFLDIITPPYDSNVGRDCTYFRVV 206          
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: W2PKA0_PHYPN (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2PKA0_PHYPN)

HSP 1 Score: 91.3 bits (225), Expect = 3.840e-20
Identity = 45/113 (39.82%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDV-----DRHIASAITT-EMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYDDDAHR-CTYFKVV 348
            T+++G+F+LPP A++PLHDH GM+V+SRVL G   + S D +       D+ + + +   E++  P    +LPD+ N+H+IV   + GC FL+++ P YD +  R C YF+VV
Sbjct:   94 TFSIGIFILPPGASIPLHDHPGMSVISRVLYGSLHIKSYDLIKDSAAPRDKKLRARLRVDEVITAPYTTELLPDYGNLHEIVGDDEIGCAFLDIITPPYDSNVGRDCAYFRVV 206          
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A3R7JLL6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JLL6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.170e-20
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVD-------RHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYD-DDAHRCTYFKVVS 351
            T+++G+F+LPP  ++PLHDH GM+V+SRVL G   V + D V  +        H+A     E+V  P    +LP+  N+H++  G   GC F +++ P YD DD   CTY++VV+
Sbjct:  244 TFSIGIFILPPGVSIPLHDHPGMSVISRVLYGSLHVKAYDLVPNEGARRGNKSHMARLRVDEVVTAPLTVELLPERNNLHELTGGDDIGCAFFDIITPPYDADDGRDCTYYRVVN 358          
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A8K1FI05_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI05_PYTOL)

HSP 1 Score: 91.7 bits (226), Expect = 5.490e-20
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   31 ATYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVD--------RHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYD-DDAHRCTYFKVV 348
            AT+++G+FVLPP A++PLHDH  M+V+SRVL G   V S D V  +        RH+A     E+V  P    +LP+  N+H+ VA  + GC   ++L P Y+ +D   CTYF++V
Sbjct:  134 ATFSMGIFVLPPGASIPLHDHPEMSVISRVLYGRLHVKSCDIVTPNQEDESSSTRHVAQIYKDEVVTAPYTTELLPNRGNLHEFVADDELGCAIFDILTPPYEPEDGRDCTYFRIV 249          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z068_9STRA4.040e-83100.00Cysteamine dioxygenase (Fragment) n=1 Tax=Tribonem... [more]
A0A6A3TW72_9STRA5.230e-2243.24Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A225V3G5_9STRA2.470e-2142.48Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A2P4Y2Z7_9STRA9.300e-2138.60Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
G4YJZ4_PHYSP1.520e-2041.74Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A5D6Y5D8_9STRA1.850e-2042.98Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A329RUH3_9STRA3.560e-2039.82Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W2PKA0_PHYPN3.840e-2039.82Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A3R7JLL6_9STRA5.170e-2039.13Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A8K1FI05_PYTOL5.490e-2041.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:320486..320836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132248|gw1.26.39.1
BRITEko00000,ko00001,ko01000
KEGG rclassRC00404
KEGG ReactionR02467
KEGG Pathwayko00430,ko01100,map00430,map01100
KEGG koko:K10712
EC1.13.11.19
DescriptionPCO_ADO
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGsKOG4281@1|root,KOG4281@2759|Eukaryota,3QAT1@4776|Peronosporales
Evalue1.15e-21
Seed ortholog4792.ETI33751
Hectar predicted targeting categoryother localisation
TranscriptId132570
TrackFilteredModels1
ProteinId132248
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132248gene_1855Tribonema minus UTEX_B_3156 geneContig_26 320486..320836 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1855_1exon_1855_1Tribonema minus UTEX_B_3156 exonContig_26 320486..320836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1855CDS_1855Tribonema minus UTEX_B_3156 CDSContig_26 320486..320836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132248Trimin1|132248|gw1.26.39.1Tribonema minus UTEX_B_3156 polypeptideContig_26 320486..320836 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1855 ID=mRNA_1855|Name=jgi.p|Trimin1|132248|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_26:320486..320836- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTTTGTGCCCCTTCATAGCCGCGCAGCAACATATGCCGTTGGGGT
GTTTGTGCTGCCACCATTGGCTACGCTGCCCTTGCACGACCATCGCGGCA
TGACTGTGGTATCTCGTGTGCTGCTCGGCTGCGCAGAAGTGGCTTCCACG
GACTGGGTAGACGTGGACCGCCACATAGCTTCCGCAATCACAACCGAGAT
GGTCCATCCACCCGCTTGCCATGTGGTCTTGCCAGATCACAAGAATATTC
ATAAGATCGTAGCAGGGGCGCAAGGGTGCACATTTCTGGAGGTTTTGATC
CCGGCTTACGATGATGATGCTCACAGGTGCACATACTTCAAAGTTGTTTC
T
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protein sequence of jgi.p|Trimin1|132248

>Trimin1|132248|gw1.26.39.1 ID=Trimin1|132248|gw1.26.39.1|Name=jgi.p|Trimin1|132248|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
MTFVPLHSRAATYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVAST
DWVDVDRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQGCTFLEVLI
PAYDDDAHRCTYFKVVS
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mRNA from alignment at Contig_26:320486..320836-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1855 ID=mRNA_1855|Name=jgi.p|Trimin1|132248|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_26:320486..320836- (Tribonema minus UTEX_B_3156 )
ATGACCTTTGTGCCCCTTCATAGCCGCGCAGCAACATATGCCGTTGGGGT GTTTGTGCTGCCACCATTGGCTACGCTGCCCTTGCACGACCATCGCGGCA TGACTGTGGTATCTCGTGTGCTGCTCGGCTGCGCAGAAGTGGCTTCCACG GACTGGGTAGACGTGGACCGCCACATAGCTTCCGCAATCACAACCGAGAT GGTCCATCCACCCGCTTGCCATGTGGTCTTGCCAGATCACAAGAATATTC ATAAGATCGTAGCAGGGGCGCAAGGGTGCACATTTCTGGAGGTTTTGATC CCGGCTTACGATGATGATGCTCACAGGTGCACATACTTCAAAGTTGTTTC T
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Coding sequence (CDS) from alignment at Contig_26:320486..320836-

>mRNA_1855 ID=mRNA_1855|Name=jgi.p|Trimin1|132248|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_26:320486..320836- (Tribonema minus UTEX_B_3156 )
ATGACCTTTGTGCCCCTTCATAGCCGCGCAGCAACATATGCCGTTGGGGT
GTTTGTGCTGCCACCATTGGCTACGCTGCCCTTGCACGACCATCGCGGCA
TGACTGTGGTATCTCGTGTGCTGCTCGGCTGCGCAGAAGTGGCTTCCACG
GACTGGGTAGACGTGGACCGCCACATAGCTTCCGCAATCACAACCGAGAT
GGTCCATCCACCCGCTTGCCATGTGGTCTTGCCAGATCACAAGAATATTC
ATAAGATCGTAGCAGGGGCGCAAGGGTGCACATTTCTGGAGGTTTTGATC
CCGGCTTACGATGATGATGCTCACAGGTGCACATACTTCAAAGTTGTTTC
T
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