mRNA_1855 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A835Z068_9STRA (Cysteamine dioxygenase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z068_9STRA) HSP 1 Score: 247 bits (630), Expect = 4.040e-83 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 Query: 1 MTFVPLHSRAATYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVDRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQGCTFLEVLIPAYDDDAHRCTYFKVVS 351 MTFVPLHSRAATYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVDRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQGCTFLEVLIPAYDDDAHRCTYFKVVS Sbjct: 1 MTFVPLHSRAATYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVDRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQGCTFLEVLIPAYDDDAHRCTYFKVVS 117
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A6A3TW72_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TW72_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 5.230e-22 Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWV-DV--DRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYD-DDAHRCTYFKVVS 351 T+++G+F+LPP ++PLHDH GM+V+SRVL G + S D V DV ++H A E++ P +LPD N+H+++ G GC FL+++ P YD +D CTY++VVS Sbjct: 124 TFSIGIFILPPGVSIPLHDHPGMSVISRVLYGSLHIKSFDLVADVGGNKHTARLQADEVLTAPHTTELLPDCGNLHQLMGGEDVGCAFLDIITPPYDSNDGRDCTYYRVVS 234
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A225V3G5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V3G5_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.470e-21 Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVD------RHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYDDDAHR-CTYFKVV 348 T+++G+F+LPP +PLHDH GM+VV+R+L G V S D V +D R +A E+V P +LPD N+H++V G GC F +++ P YD + R CTYF+VV Sbjct: 93 TFSIGIFILPPGVAIPLHDHPGMSVVTRLLYGSLHVKSYDLVQIDAAPLGKRQMARIRADEVVTAPHTAELLPDCGNLHELVGGDDVGCAFFDIITPPYDANEGRDCTYFRVV 205
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A2P4Y2Z7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2Z7_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 9.300e-21 Identity = 44/114 (38.60%), Postives = 71/114 (62.28%), Query Frame = 1 Query: 34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVD------RHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYD-DDAHRCTYFKVVS 351 T+++G+F+LPP ++PLHDH GM+V+SR+L G + S D V +H A E+V P +LPD+ N+H++V G GC F++++ P YD +D CTY++V++ Sbjct: 91 TFSIGIFILPPGVSIPLHDHPGMSVISRLLYGSLHIKSYDLVKDGAVPVGKKHKARLQADEIVVAPHTAELLPDYGNLHELVGGEDIGCAFVDIITPPYDANDGRDCTYYRVIA 204
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: G4YJZ4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YJZ4_PHYSP) HSP 1 Score: 92.4 bits (228), Expect = 1.520e-20 Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 1 Query: 34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVD-------VDRHIASAITT-EMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYD-DDAHRCTYFKVV 348 T+++G+F+LPP A++PLHDH GMTVVSR+L G + S D V V + + + + E++ P +LPD N+H +V G GC FL+++ P YD +D CTYF+VV Sbjct: 95 TFSIGIFILPPGASIPLHDHPGMTVVSRMLYGSLHIKSYDLVKDGATTAAVGKKVTARLQADEVLTAPHTTELLPDCGNLHHLVGGDDTGCAFLDIITPPYDSNDGRDCTYFRVV 209
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A5D6Y5D8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5D8_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.850e-20 Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 37 YAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVDRHIASAITT--------EMVHPPACHVVLPDHKNIHKIVAG-AQGCTFLEVLIPAYD-DDAHRCTYFKVV 348 +++G+F+LPP A++PLHDH M+V+SRVL G V S D V SA E +H P +LPDH N+H+ VAG A GC ++L P Y+ DD CTY++VV Sbjct: 111 FSMGIFILPPGASIPLHDHPEMSVISRVLYGSLHVRSCDLVAGSPARTSAAAPLMARVCADEEIHAPHTAELLPDHGNLHEFVAGDALGCAIFDILTPPYEPDDGRDCTYYRVV 224
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A329RUH3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RUH3_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 3.560e-20 Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWV------DVDRHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYDDDAHR-CTYFKVV 348 T+++G+F+LPP ++PLHDH GM+V+SRVL G + S D + + A E++ P +LPD+ N+H+I+A GC FL+++ P YD + R CTYF+VV Sbjct: 94 TFSIGIFILPPGVSIPLHDHPGMSVISRVLYGSLHIKSYDLIKDGAVPSGKKQRAILRVDEVITAPYTTELLPDYGNLHEIIADDDVGCAFLDIITPPYDSNVGRDCTYFRVV 206
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: W2PKA0_PHYPN (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2PKA0_PHYPN) HSP 1 Score: 91.3 bits (225), Expect = 3.840e-20 Identity = 45/113 (39.82%), Postives = 72/113 (63.72%), Query Frame = 1 Query: 34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDV-----DRHIASAITT-EMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYDDDAHR-CTYFKVV 348 T+++G+F+LPP A++PLHDH GM+V+SRVL G + S D + D+ + + + E++ P +LPD+ N+H+IV + GC FL+++ P YD + R C YF+VV Sbjct: 94 TFSIGIFILPPGASIPLHDHPGMSVISRVLYGSLHIKSYDLIKDSAAPRDKKLRARLRVDEVITAPYTTELLPDYGNLHEIVGDDEIGCAFLDIITPPYDSNVGRDCAYFRVV 206
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A3R7JLL6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JLL6_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 5.170e-20 Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1 Query: 34 TYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVD-------RHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYD-DDAHRCTYFKVVS 351 T+++G+F+LPP ++PLHDH GM+V+SRVL G V + D V + H+A E+V P +LP+ N+H++ G GC F +++ P YD DD CTY++VV+ Sbjct: 244 TFSIGIFILPPGVSIPLHDHPGMSVISRVLYGSLHVKAYDLVPNEGARRGNKSHMARLRVDEVVTAPLTVELLPERNNLHELTGGDDIGCAFFDIITPPYDADDGRDCTYYRVVN 358
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Match: A0A8K1FI05_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI05_PYTOL) HSP 1 Score: 91.7 bits (226), Expect = 5.490e-20 Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1 Query: 31 ATYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTDWVDVD--------RHIASAITTEMVHPPACHVVLPDHKNIHKIVAGAQ-GCTFLEVLIPAYD-DDAHRCTYFKVV 348 AT+++G+FVLPP A++PLHDH M+V+SRVL G V S D V + RH+A E+V P +LP+ N+H+ VA + GC ++L P Y+ +D CTYF++V Sbjct: 134 ATFSMGIFVLPPGASIPLHDHPEMSVISRVLYGRLHVKSCDIVTPNQEDESSSTRHVAQIYKDEVVTAPYTTELLPNRGNLHEFVADDELGCAIFDILTPPYEPEDGRDCTYFRIV 249 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132248 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1855 ID=mRNA_1855|Name=jgi.p|Trimin1|132248|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_26:320486..320836- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACCTTTGTGCCCCTTCATAGCCGCGCAGCAACATATGCCGTTGGGGTback to top protein sequence of jgi.p|Trimin1|132248 >Trimin1|132248|gw1.26.39.1 ID=Trimin1|132248|gw1.26.39.1|Name=jgi.p|Trimin1|132248|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp MTFVPLHSRAATYAVGVFVLPPLATLPLHDHRGMTVVSRVLLGCAEVASTback to top mRNA from alignment at Contig_26:320486..320836- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1855 ID=mRNA_1855|Name=jgi.p|Trimin1|132248|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_26:320486..320836- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_26:320486..320836- >mRNA_1855 ID=mRNA_1855|Name=jgi.p|Trimin1|132248|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_26:320486..320836- (Tribonema minus UTEX_B_3156 )back to top |