mRNA_1853 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137109
Unique NamemRNA_1853
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A836CHL5_9STRA (Collar domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL5_9STRA)

HSP 1 Score: 227 bits (579), Expect = 7.950e-75
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1
Query:    1 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVNTDHTLGTSIGSETHTLSMSEIPSHTHSATIDAAXXXXXXXXXXXXXXXGHNATSVTQGLAFSDGLHTMTGSDDQNPSGTELNLNGA 399
            WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVNTDHTLGTSIGSETHTLSMSEIPSHTHSATIDAAXXXXXXXXXXXXXXXGHNATSVTQGLAFSDGLHTMTGSDDQNPSGTELNLNGA
Sbjct:    1 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVNTDHTLGTSIGSETHTLSMSEIPSHTHSATIDAAXXXXXXXXXXXXXXXGHNATSVTQGLAFSDGLHTMTGSDDQNPSGTELNLNGA 133          
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A835ZHE3_9STRA (Collar domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 5.070e-41
Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 WLKCDGRSIARTAFPLLFQLLGVSFASADSST-FNLPDARGHVVAAVNTDHTLGTSIGSETHTLSMSEIPSHTHSATIDAAXXXXXXXXXXXXXXXGHNATSVTQGLAFSDGLHTMTGSDDQNPSGTELNLNGA 399
            WLKCDGRS++R AFP+LF +LG +F +A +ST F LPDARG V+A+V+ DH +G S G+ETH LS+SEIPSH+H ATID+A XXXXXXXXXXXXXX   ATS TQG+  SDG +TM GSD +NPSGTELNL GA
Sbjct:   19 WLKCDGRSLSRVAFPVLFAMLGNTFGAASTSTTFKLPDARGRVIASVSGDHAVGGSSGAETHALSVSEIPSHSHVATIDSAGXXXXXXXXXXXXXXXXXATSSTQGIVVSDGANTMVGSDSENPSGTELNLGGA 152          
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A6C0DW18_9ZZZZ (Collar domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DW18_9ZZZZ)

HSP 1 Score: 87.4 bits (215), Expect = 6.210e-19
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVNTD-----HTLGTSIGSETHTLSMSEIPSHTHS 222
            WLKCDGRS++RT +  LF+++G +F + DS TF LPD RG V+  + T       +LG  +G+ETHTL++ EIPSHTH+
Sbjct:   51 WLKCDGRSLSRTLYAKLFEVIGTAFGNDDSETFKLPDCRGRVLGTIGTGAGLTARSLGAMVGAETHTLTVGEIPSHTHT 129          
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A835ZKI7_9STRA (Collar domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.930e-15
Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = 1
Query:    1 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVN------TDHTLGTSIGSETHTLSMSEIPSHTHSATIDAAXXXXXXXXXXXXXXXGHNATSVTQGLAFSDGLHTMTGSDDQNPSGTELNLN 393
            WL CDGR ++R  +  LF ++G  F S   +TFNLPD R   + A        +    G ++G+ETHTL++ E+PSH+H+ T  + XXXXXXXXXXXXXXX  NAT    GL   +G  TMT SD    S  E+N N
Sbjct:   40 WLVCDGRQLSRETYKDLFDVIGTDFGSGCGNTFNLPDCRSRGIGACGDGGNSLSARARGDAVGAETHTLTVGEMPSHSHTGTTSSNXXXXXXXXXXXXXXXXXNATGDNIGLTVINGYGTMTSSD---ASSGEINNN 173          
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A6C0ALD8_9ZZZZ (Collar domain-containing protein n=2 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ALD8_9ZZZZ)

HSP 1 Score: 78.6 bits (192), Expect = 3.910e-15
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVN-----TDHTLGTSIGSETHTLSMSEIPSHTHSAT 228
            W+ CDGRS++RT +  L+ ++G+ F S  SSTF +PD RG V   +      T+  LGTS+G E HTL++ E+P+H H  T
Sbjct:   64 WMICDGRSLSRTDYEELYDIIGIQFGSNHSSTFKIPDMRGRVAGGIGDGPSTTNRPLGTSLGEEEHTLTVGEMPTHNHGVT 144          
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A5B8XJ48_9RICK (Phage tail collar domain protein n=1 Tax=Candidatus Deianiraea vastatrix TaxID=2163644 RepID=A0A5B8XJ48_9RICK)

HSP 1 Score: 79.7 bits (195), Expect = 8.980e-15
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 WLKCDGRSIARTAFPLLFQLLGVSFASADSS-TFNLPDARGHVVAAVN-----TDHTLGTSIGSETHTLSMSEIPSHTHS 222
            WL C+G++++RT +  LF LLG +F + D + TFNLPD RG   AA+      T+ TLG  +G+ETHTL+++E+PSH+HS
Sbjct:  449 WLLCNGQAVSRTTYSELFALLGTNFGAGDGTLTFNLPDFRGRTFAAIGQGSGLTNRTLGQKVGAETHTLTVNEMPSHSHS 528          
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A8K0YSH4_9CAUD (Minor tail protein n=1 Tax=Microbacterium phage PoRanda TaxID=2743924 RepID=A0A8K0YSH4_9CAUD)

HSP 1 Score: 74.7 bits (182), Expect = 4.340e-14
Identity = 38/84 (45.24%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 WLKCDGRSIARTAFPLLFQLLGVSFASAD-SSTFNLPDARGHVVAAVNTDHT----LGTSIGSETHTLSMSEIPSHTHSATIDA 237
            +L  DGR+I+RT +P LF L+GV++   + S+TFN+PDARG  + +++T  T    LG + G++THTL+++++PSHTH A  +A
Sbjct:   42 YLPMDGRAISRTEYPALFALIGVTYGPGNGSTTFNVPDARGRALVSIDTAQTEFNVLGKTGGAKTHTLTVAQMPSHTHGAGANA 125          
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: UPI00115D163A (phage tail fiber protein n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115D163A)

HSP 1 Score: 74.7 bits (182), Expect = 5.020e-13
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 WLKCDGRSIARTAFPLLFQLLGVSFASAD-SSTFNLPDARGHVVAAVN-----TDHTLGTSIGSETHTLSMSEIPSHTHS 222
            WL C G++++RT +  LF ++G ++ + + SSTFNLPD RG     V      T+  LG  +G+ETHTLS++EIPSH+HS
Sbjct:  425 WLLCQGQAVSRTTYSALFAVIGTTYGAGNGSSTFNLPDFRGRAPIGVGQGSGLTNRALGARVGAETHTLSINEIPSHSHS 504          
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: UPI001B8B5580 (tail fiber protein n=1 Tax=Magnetospirillum sp. J10 TaxID=611300 RepID=UPI001B8B5580)

HSP 1 Score: 71.2 bits (173), Expect = 1.570e-12
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 WLKCDGRSIARTAFPLLFQLLGVSFASAD-SSTFNLPDARGHVVAAVN-----TDHTLGTSIGSETHTLSMSEIPSHTHSATI 231
            WL CDG  ++RT +  LF +LG +F + D S+TF LPD RG            T+ T+G  IG+ETH LS++E+PSH+H   +
Sbjct:   86 WLICDGAVVSRTTYAALFTVLGATFGAGDGSTTFALPDLRGRAAIGAGLGTNLTNRTIGGKIGTETHILSIAEMPSHSHGCAV 168          
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Match: A0A0U4JXW2_9CAUD (Tail protein n=1 Tax=Arthrobacter phage Gordon TaxID=1772298 RepID=A0A0U4JXW2_9CAUD)

HSP 1 Score: 72.0 bits (175), Expect = 4.180e-12
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 WLKCDGRSIARTAFPLLFQLLGVSFASAD-SSTFNLPDARGHVVAAVNTDHT----LGTSIGSETHTLSMSEIPSHTH 219
            W+ CDG +++RT FP L+ +LG  + + D S+TFNLP+ +G V   V+   T    LG   GS+THTLS++E+PSHTH
Sbjct:   76 WMFCDGAAVSRTNFPDLYNILGTMYGAGDGSTTFNLPNLKGRVPVGVDVAQTEFEVLGRLGGSKTHTLSVAELPSHTH 153          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137109 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHL5_9STRA7.950e-75100.00Collar domain-containing protein (Fragment) n=1 Ta... [more]
A0A835ZHE3_9STRA5.070e-4167.91Collar domain-containing protein n=1 Tax=Tribonema... [more]
A0A6C0DW18_9ZZZZ6.210e-1950.63Collar domain-containing protein n=1 Tax=viral met... [more]
A0A835ZKI7_9STRA1.930e-1545.99Collar domain-containing protein n=1 Tax=Tribonema... [more]
A0A6C0ALD8_9ZZZZ3.910e-1544.44Collar domain-containing protein n=2 Tax=viral met... [more]
A0A5B8XJ48_9RICK8.980e-1548.75Phage tail collar domain protein n=1 Tax=Candidatu... [more]
A0A8K0YSH4_9CAUD4.340e-1445.24Minor tail protein n=1 Tax=Microbacterium phage Po... [more]
UPI00115D163A5.020e-1346.25phage tail fiber protein n=1 Tax=Telmatospirillum ... [more]
UPI001B8B55801.570e-1243.37tail fiber protein n=1 Tax=Magnetospirillum sp. J1... [more]
A0A0U4JXW2_9CAUD4.180e-1247.44Tail protein n=1 Tax=Arthrobacter phage Gordon Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:313272..313670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137109|gw1.26.108.1
DescriptionPhage Tail Collar Domain
COG categoryMU
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG4675@1|root,COG4675@2|Bacteria,2INZS@201174|Actinobacteria,4FQNX@85023|Microbacteriaceae
Evalue4.56e-12
Seed ortholog1416759.AYMR01000014_gene4106
Hectar predicted targeting categorysignal peptide
TranscriptId137431
TrackFilteredModels1
ProteinId137109
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137109gene_1853Tribonema minus UTEX_B_3156 geneContig_26 313272..313670 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1853_1exon_1853_1Tribonema minus UTEX_B_3156 exonContig_26 313272..313670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1853CDS_1853Tribonema minus UTEX_B_3156 CDSContig_26 313272..313670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137109Trimin1|137109|gw1.26.108.1Tribonema minus UTEX_B_3156 polypeptideContig_26 313272..313670 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1853 ID=mRNA_1853|Name=jgi.p|Trimin1|137109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_26:313272..313670- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGCTCAAATGCGACGGCAGGTCCATAGCACGCACAGCATTTCCCCTGCT
GTTTCAGCTGCTCGGTGTAAGCTTTGCATCAGCGGACTCATCCACTTTCA
ACCTTCCTGATGCACGTGGACACGTTGTTGCTGCAGTGAACACTGACCAC
ACTCTCGGAACGTCTATCGGCTCGGAGACACACACGCTGTCCATGTCTGA
AATTCCGAGTCACACACACAGTGCCACCATCGATGCAGCAGGCGTGCACA
CTCACAGCGTCGACTCTGCAGGGTCGCACACTCACGGTCATAACGCTACA
AGCGTTACGCAGGGGCTTGCATTTTCAGATGGATTGCACACAATGACGGG
GAGTGACGATCAGAACCCATCTGGCACCGAGCTGAACCTGAATGGAGCA
back to top

protein sequence of jgi.p|Trimin1|137109

>Trimin1|137109|gw1.26.108.1 ID=Trimin1|137109|gw1.26.108.1|Name=jgi.p|Trimin1|137109|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
WLKCDGRSIARTAFPLLFQLLGVSFASADSSTFNLPDARGHVVAAVNTDH
TLGTSIGSETHTLSMSEIPSHTHSATIDAAGVHTHSVDSAGSHTHGHNAT
SVTQGLAFSDGLHTMTGSDDQNPSGTELNLNGA
back to top

mRNA from alignment at Contig_26:313272..313670-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1853 ID=mRNA_1853|Name=jgi.p|Trimin1|137109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_26:313272..313670- (Tribonema minus UTEX_B_3156 )
TGGCTCAAATGCGACGGCAGGTCCATAGCACGCACAGCATTTCCCCTGCT GTTTCAGCTGCTCGGTGTAAGCTTTGCATCAGCGGACTCATCCACTTTCA ACCTTCCTGATGCACGTGGACACGTTGTTGCTGCAGTGAACACTGACCAC ACTCTCGGAACGTCTATCGGCTCGGAGACACACACGCTGTCCATGTCTGA AATTCCGAGTCACACACACAGTGCCACCATCGATGCAGCAGGCGTGCACA CTCACAGCGTCGACTCTGCAGGGTCGCACACTCACGGTCATAACGCTACA AGCGTTACGCAGGGGCTTGCATTTTCAGATGGATTGCACACAATGACGGG GAGTGACGATCAGAACCCATCTGGCACCGAGCTGAACCTGAATGGAGCA
back to top

Coding sequence (CDS) from alignment at Contig_26:313272..313670-

>mRNA_1853 ID=mRNA_1853|Name=jgi.p|Trimin1|137109|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_26:313272..313670- (Tribonema minus UTEX_B_3156 )
TGGCTCAAATGCGACGGCAGGTCCATAGCACGCACAGCATTTCCCCTGCT
GTTTCAGCTGCTCGGTGTAAGCTTTGCATCAGCGGACTCATCCACTTTCA
ACCTTCCTGATGCACGTGGACACGTTGTTGCTGCAGTGAACACTGACCAC
ACTCTCGGAACGTCTATCGGCTCGGAGACACACACGCTGTCCATGTCTGA
AATTCCGAGTCACACACACAGTGCCACCATCGATGCAGCAGGCGTGCACA
CTCACAGCGTCGACTCTGCAGGGTCGCACACTCACGGTCATAACGCTACA
AGCGTTACGCAGGGGCTTGCATTTTCAGATGGATTGCACACAATGACGGG
GAGTGACGATCAGAACCCATCTGGCACCGAGCTGAACCTGAATGGAGCA
back to top