mRNA_18515 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|51369
Unique NamemRNA_18515
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A835Z2F8_9STRA (ATG11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F8_9STRA)

HSP 1 Score: 346 bits (888), Expect = 2.170e-120
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1
Query:    1 ESAWQQYLLRGIEDAIADATGAPGVSDRPLLTLPQGVQSLAAALAPLVLELNAGANPRSGIAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAECTPPTLLLPPRAASVC 513
            ESAWQQYLLRGIEDAIADATGAPGVSDRPLLTLPQGVQSLAAALAPLVLELNAGANPRSGIAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAECTPPTLLLPPRAASVC
Sbjct:    1 ESAWQQYLLRGIEDAIADATGAPGVSDRPLLTLPQGVQSLAAALAPLVLELNAGANPRSGIAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAECTPPTLLLPPRAASVC 171          
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A7R9UFA6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFA6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.890e-20
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  181 IAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAECT 471
            I++  F +    LFL TP  ++LAFNVGAP HFLA E A+L+G D HFT +YILGR+  IERRTA       S+ Y LP G ++ V+ + +++ E T
Sbjct:  203 ISFTSFTISDIGLFLVTPGNYYLAFNVGAPRHFLAPECAELVGKDKHFTPYYILGRITDIERRTAGPPEEPESNPYHLPEGVEFCVVYLESIAEELT 299          
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A7S1U7A8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7A8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.490e-19
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  181 IAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAE 465
            I++  F +G   LF+ TP  H+LAFNVGAP HF+A ESA LIG D +FT +YILGR+  I R+TA       S+ + L  G D+ +++V +++ E
Sbjct:   76 ISFTSFTIGDVGLFMVTPGNHYLAFNVGAPRHFVAPESAALIGRDKYFTPYYILGRITDILRKTAGAPGDAQSNPFGLSEGDDFHMVSVESITEE 170          
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A812VLL7_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VLL7_SYMMI)

HSP 1 Score: 79.7 bits (195), Expect = 2.690e-14
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  181 IAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAE 465
            I+   F+    ALF PTP G +LAFN GAP+H+L+ ES  LIGHD HF + Y++G++V  E + AT         Y+L  G  Y  ++V +V+++
Sbjct:  242 ISLSSFKENDLALFFPTPRGDYLAFNAGAPHHYLSAESKALIGHDKHFRKIYVMGKIVLKEEKIAT----ADDSPYRLAPGVKYYEVSVTSVTSQ 332          
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A1V9Y4Q5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4Q5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.850e-6
Identity = 49/152 (32.24%), Postives = 66/152 (43.42%), Query Frame = 1
Query:   13 QQYLLRGIEDAIADATGAPGVSDRPLLTLPQGVQSLAAALAPLVLELNAGANPRSGIAYRGFEVGCTALFLPT-------PHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTV 447
            Q + L G+ED+  D     G+           +    A  A      +AG    S IA+R F     ALFLPT           +LAF++G PN FL+ ES        +    YILGR+V I+ R AT       + Y+L  G  + VLTV
Sbjct:  690 QIWSLVGMEDSALDVQSVDGLQRGLDAFEDMWLAKQQAEKAAPTPTADAGDGEMSKIAFRSFSFNDLALFLPTFAPSDAAASKIYLAFHLGCPNRFLSDESIATFYQTQNRYPEYILGRIVFIDEREATERD----NPYRLILGTTFYVLTV 837          
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A485LS47_9STRA (Aste57867_25053 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS47_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.440e-5
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 1
Query:  175 SGIAYRGFEVGCTALFLPT--PHGH-----FLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTV 447
            S IA+R F     ALFLPT  P+       +LAF++G PN FL+ ES        +    YILGR+V I+ R AT       + Y+L  G  + VLTV
Sbjct:  749 SKIAFRAFSYNDLALFLPTFAPNDVNAAKIYLAFHLGCPNRFLSDESITTFYQTQNRYPEYILGRIVYIDERVATERD----NPYRLITGTTFYVLTV 842          
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A397E0U3_9STRA (ATG11 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E0U3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.550e-5
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 1
Query:  166 NPRSGIAYRGFEVGCTALFLPT-------PHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTV 447
             P S IA+R F     ALFLPT           +LAF++G PN FL+ ES        +    YILGR+V I+ R A++      + Y+L  G  + VLTV
Sbjct:  147 EPSSKIAFRSFSYNDLALFLPTFAPTDAAAAKIYLAFHLGCPNRFLSDESITTFYQMHNRYPEYILGRIVFIDERVASDRD----NPYRLIAGTTFYVLTV 243          
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A6G0WZC7_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZC7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.320e-5
Identity = 39/101 (38.61%), Postives = 53/101 (52.48%), Query Frame = 1
Query:  172 RSGIAYRGFEVGCTALFLPT--PHGH-----FLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMA 453
            +S IA+R F     ALFLPT  P+       +LAF++G PN FL+ ES        +    YILGR+V I+ R A+       + Y+L  G  + VLTV A
Sbjct:  730 QSTIAFRSFSYNDLALFLPTFAPNDTNAAKIYLAFHLGCPNRFLSDESITTFYQTQNRYPEYILGRIVFIDERVASERD----NPYRLITGTTFYVLTVTA 826          
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A1V9Y798_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y798_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.700e-5
Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = 1
Query:  181 IAYRGFEVGCTALFLPT-------PHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTV 447
            IA+R FE    ALFLPT           +LAF++G PN FL+ ES        +    YILGR+V I+ R AT       + Y+L  G  + VLTV
Sbjct: 1000 IAFRSFEFDDLALFLPTFAPSDVSAPKVYLAFHLGCPNRFLSDESISTFYQTQNQYPEYILGRIVFIDERVATERD----NPYRLILGTTFYVLTV 1091          
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: W4H826_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H826_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.940e-5
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 1
Query:  166 NPRSGIAYRGFEVGCTALFLPT-------PHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTV 447
             P S IA+R F     ALFLPT           +LAF++G PN FL+ ES        +    YILGR+V I+ R A++      + Y+L  G  + VLTV
Sbjct:  746 EPSSKIAFRSFSYSDLALFLPTFAPTDAAAAKIYLAFHLGCPNRFLSDESITTFYQMHNRYPEYILGRIVFIDERVASDRD----NPYRLIAGTTFYVLTV 842          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835Z2F8_9STRA2.170e-120100.00ATG11 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7R9UFA6_9STRA1.890e-2047.42Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U7A8_9STRA3.490e-1945.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A812VLL7_SYMMI2.690e-1441.05Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A1V9Y4Q5_9STRA8.850e-632.24Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485LS47_9STRA5.440e-539.80Aste57867_25053 protein n=1 Tax=Aphanomyces stella... [more]
A0A397E0U3_9STRA5.550e-537.62ATG11 domain-containing protein (Fragment) n=2 Tax... [more]
A0A6G0WZC7_9STRA7.320e-538.61Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A1V9Y798_9STRA7.700e-539.58Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4H826_9STRA9.940e-537.62Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_269contigContig_269:85250..86483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|51369|CE51368_6
DescriptionAutophagy-related protein 11
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28MXS@1|root,2SDRJ@2759|Eukaryota
Evalue6.7e-19
Seed ortholog2880.D8LEL8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAutophagy-related protein 11
Ec32 orthologEc-23_002530.1
TranscriptId51691
TrackFilteredModels1
ProteinId51369
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|51369gene_18515Tribonema minus UTEX_B_3156 geneContig_269 85250..86483 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18515_1exon_18515_1Tribonema minus UTEX_B_3156 exonContig_269 85250..85612 +
exon_18515_2exon_18515_2Tribonema minus UTEX_B_3156 exonContig_269 86280..86483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18515CDS_18515Tribonema minus UTEX_B_3156 CDSContig_269 85250..85612 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18515UTR3_18515Tribonema minus UTEX_B_3156 three_prime_UTRContig_269 86433..86483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|51369Trimin1|51369|CE51368_6Tribonema minus UTEX_B_3156 polypeptideContig_269 85250..86432 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18515 ID=mRNA_18515|Name=jgi.p|Trimin1|51369|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=567bp|location=Sequence derived from alignment at Contig_269:85250..86483+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAATCTGCGTGGCAGCAGTACCTCCTCAGGGGCATCGAAGACGCCATTGC
CGACGCCACAGGCGCCCCTGGCGTGTCAGATCGTCCGTTACTAACCCTCC
CACAGGGGGTCCAATCGCTGGCAGCAGCGCTTGCCCCCCTGGTCCTCGAG
CTCAACGCCGGCGCCAACCCTAGGTCTGGCATCGCCTACCGAGGGTTTGA
AGTTGGGTGCACGGCGCTGTTTCTGCCGACGCCGCATGGACACTTCCTCG
CGTTCAACGTCGGTGCGCCGAACCACTTTTTGGCGCGCGAAAGCGCGCAG
CTGATTGGCCACGACCCGCACTTCACCGAGTTCTACATCCTCGGCCGCGT
CGTGCAGATTGAGCGGCGGACCGCAACAAACGGCAGCGGCGTCGGCAGCG
ACCACTACCAGCTGCCTCGTGGCTGCGACTACGCCGTCCTCACGGTGATG
GCCGTCTCAGCGGAGTGCACGCCGCCAACGCTGCTGCTGCCGCCACGCGC
TGCCAGTGTGTGCTGAGCGCTGGAGGTGGCGGCAGCGCTCTGCCCGCTGC
TGCTGCTGCCGCTGCCC
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protein sequence of jgi.p|Trimin1|51369

>Trimin1|51369|CE51368_6 ID=Trimin1|51369|CE51368_6|Name=jgi.p|Trimin1|51369|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=172bp
ESAWQQYLLRGIEDAIADATGAPGVSDRPLLTLPQGVQSLAAALAPLVLE
LNAGANPRSGIAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQ
LIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVM
AVSAECTPPTLLLPPRAASVC*
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mRNA from alignment at Contig_269:85250..86483+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18515 ID=mRNA_18515|Name=jgi.p|Trimin1|51369|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1234bp|location=Sequence derived from alignment at Contig_269:85250..86483+ (Tribonema minus UTEX_B_3156 )
GAATCTGCGTGGCAGCAGTACCTCCTCAGGGGCATCGAAGACGCCATTGC CGACGCCACAGGCGCCCCTGGCGTGTCAGATCGTCCGTTACTAACCCTCC CACAGGGGGTCCAATCGCTGGCAGCAGCGCTTGCCCCCCTGGTCCTCGAG CTCAACGCCGGCGCCAACCCTAGGTCTGGCATCGCCTACCGAGGGTTTGA AGTTGGGTGCACGGCGCTGTTTCTGCCGACGCCGCATGGACACTTCCTCG CGTTCAACGTCGGTGCGCCGAACCACTTTTTGGCGCGCGAAAGCGCGCAG CTGATTGGCCACGACCCGCACTTCACCGAGTTCTACATCCTCGGCCGCGT CGTGCAGATTGAGGTGAGGCCGAGAGTGTATAACTTTGCTATAAGTTACT GTTATGATGCTAATTACTATGTAGTATTATGGACACGTCCTCGCGTTCAA CGTTGGCGCGCCGAACCACTTTCTGGCGCGTGAGAGCGCGCAGCTGATTG GCCACGACCCGCACTTCACCGAGTTCTACATTCTGGGGCGCGTCGTGCAG ATCGAGGTGAGGCCGACTGTGTACGCTTTGCTATAGGTACTGTTGAAACA ATACTACTGTTACCGTTGTAAACAATACTAAATACTTCAGAAGTACTACT GTTGTAAACGTTTTAGAGTGGTACTGAGTGTGCATTTAGGCACAAAACCT GCACTTCACCATTGCGCCGGAGCTGGAAGCAGACAGGCCGGCCTTGAGTA GAGATGATGACACTTGACGGCGAATATTGCATGTTATGGTGTTGACTGCA CGCGCCTCAAGCACAGGGTAGGCATGTATACCACTGCTAGTGCACGGCGG TCCTGCTGCGCGGGCACCGACACACATTCACTGGCTCTCTCTCTCCCTCT GCCAATCGCTGCTGCGTCACAACAGTGCACCGACTCAACACTCACAGGCT CTCCCTCTGTCATTGCTCCACAGCAGTGCACCGACACAACACTCACTGGC TCTCCCTCTGTCATTGCTGCTGCGTTACAGCGGCGGACCGCAACAAACGG CAGCGGCGTCGGCAGCGACCACTACCAGCTGCCTCGTGGCTGCGACTACG CCGTCCTCACGGTGATGGCCGTCTCAGCGGAGTGCACGCCGCCAACGCTG CTGCTGCCGCCACGCGCTGCCAGTGTGTGCTGAGCGCTGGAGGTGGCGGC AGCGCTCTGCCCGCTGCTGCTGCTGCCGCTGCCC
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Coding sequence (CDS) from alignment at Contig_269:85250..86483+

>mRNA_18515 ID=mRNA_18515|Name=jgi.p|Trimin1|51369|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=516bp|location=Sequence derived from alignment at Contig_269:85250..86483+ (Tribonema minus UTEX_B_3156 )
GAATCTGCGTGGCAGCAGTACCTCCTCAGGGGCATCGAAGACGCCATTGC
CGACGCCACAGGCGCCCCTGGCGTGTCAGATCGTCCGTTACTAACCCTCC
CACAGGGGGTCCAATCGCTGGCAGCAGCGCTTGCCCCCCTGGTCCTCGAG
CTCAACGCCGGCGCCAACCCTAGGTCTGGCATCGCCTACCGAGGGTTTGA
AGTTGGGTGCACGGCGCTGTTTCTGCCGACGCCGCATGGACACTTCCTCG
CGTTCAACGTCGGTGCGCCGAACCACTTTTTGGCGCGCGAAAGCGCGCAG
CTGATTGGCCACGACCCGCACTTCACCGAGTTCTACATCCTCGGCCGCGT
CGTGCAGATTGAGCGGCGGACCGCAACAAACGGCAGCGGCGTCGGCAGCG
ACCACTACCAGCTGCCTCGTGGCTGCGACTACGCCGTCCTCACGGTGATG
GCCGTCTCAGCGGAGTGCACGCCGCCAACGCTGCTGCTGCCGCCACGCGC
TGCCAGTGTGTGCTGA
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