mRNA_18515 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A835Z2F8_9STRA (ATG11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F8_9STRA) HSP 1 Score: 346 bits (888), Expect = 2.170e-120 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 Query: 1 ESAWQQYLLRGIEDAIADATGAPGVSDRPLLTLPQGVQSLAAALAPLVLELNAGANPRSGIAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAECTPPTLLLPPRAASVC 513 ESAWQQYLLRGIEDAIADATGAPGVSDRPLLTLPQGVQSLAAALAPLVLELNAGANPRSGIAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAECTPPTLLLPPRAASVC Sbjct: 1 ESAWQQYLLRGIEDAIADATGAPGVSDRPLLTLPQGVQSLAAALAPLVLELNAGANPRSGIAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAECTPPTLLLPPRAASVC 171
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A7R9UFA6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFA6_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.890e-20 Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 1 Query: 181 IAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAECT 471 I++ F + LFL TP ++LAFNVGAP HFLA E A+L+G D HFT +YILGR+ IERRTA S+ Y LP G ++ V+ + +++ E T Sbjct: 203 ISFTSFTISDIGLFLVTPGNYYLAFNVGAPRHFLAPECAELVGKDKHFTPYYILGRITDIERRTAGPPEEPESNPYHLPEGVEFCVVYLESIAEELT 299
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A7S1U7A8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7A8_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.490e-19 Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 1 Query: 181 IAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAE 465 I++ F +G LF+ TP H+LAFNVGAP HF+A ESA LIG D +FT +YILGR+ I R+TA S+ + L G D+ +++V +++ E Sbjct: 76 ISFTSFTIGDVGLFMVTPGNHYLAFNVGAPRHFVAPESAALIGRDKYFTPYYILGRITDILRKTAGAPGDAQSNPFGLSEGDDFHMVSVESITEE 170
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A812VLL7_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VLL7_SYMMI) HSP 1 Score: 79.7 bits (195), Expect = 2.690e-14 Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 181 IAYRGFEVGCTALFLPTPHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMAVSAE 465 I+ F+ ALF PTP G +LAFN GAP+H+L+ ES LIGHD HF + Y++G++V E + AT Y+L G Y ++V +V+++ Sbjct: 242 ISLSSFKENDLALFFPTPRGDYLAFNAGAPHHYLSAESKALIGHDKHFRKIYVMGKIVLKEEKIAT----ADDSPYRLAPGVKYYEVSVTSVTSQ 332
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A1V9Y4Q5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4Q5_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 8.850e-6 Identity = 49/152 (32.24%), Postives = 66/152 (43.42%), Query Frame = 1 Query: 13 QQYLLRGIEDAIADATGAPGVSDRPLLTLPQGVQSLAAALAPLVLELNAGANPRSGIAYRGFEVGCTALFLPT-------PHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTV 447 Q + L G+ED+ D G+ + A A +AG S IA+R F ALFLPT +LAF++G PN FL+ ES + YILGR+V I+ R AT + Y+L G + VLTV Sbjct: 690 QIWSLVGMEDSALDVQSVDGLQRGLDAFEDMWLAKQQAEKAAPTPTADAGDGEMSKIAFRSFSFNDLALFLPTFAPSDAAASKIYLAFHLGCPNRFLSDESIATFYQTQNRYPEYILGRIVFIDEREATERD----NPYRLILGTTFYVLTV 837
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A485LS47_9STRA (Aste57867_25053 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS47_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 5.440e-5 Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 1 Query: 175 SGIAYRGFEVGCTALFLPT--PHGH-----FLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTV 447 S IA+R F ALFLPT P+ +LAF++G PN FL+ ES + YILGR+V I+ R AT + Y+L G + VLTV Sbjct: 749 SKIAFRAFSYNDLALFLPTFAPNDVNAAKIYLAFHLGCPNRFLSDESITTFYQTQNRYPEYILGRIVYIDERVATERD----NPYRLITGTTFYVLTV 842
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A397E0U3_9STRA (ATG11 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E0U3_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 5.550e-5 Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 1 Query: 166 NPRSGIAYRGFEVGCTALFLPT-------PHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTV 447 P S IA+R F ALFLPT +LAF++G PN FL+ ES + YILGR+V I+ R A++ + Y+L G + VLTV Sbjct: 147 EPSSKIAFRSFSYNDLALFLPTFAPTDAAAAKIYLAFHLGCPNRFLSDESITTFYQMHNRYPEYILGRIVFIDERVASDRD----NPYRLIAGTTFYVLTV 243
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A6G0WZC7_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZC7_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 7.320e-5 Identity = 39/101 (38.61%), Postives = 53/101 (52.48%), Query Frame = 1 Query: 172 RSGIAYRGFEVGCTALFLPT--PHGH-----FLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTVMA 453 +S IA+R F ALFLPT P+ +LAF++G PN FL+ ES + YILGR+V I+ R A+ + Y+L G + VLTV A Sbjct: 730 QSTIAFRSFSYNDLALFLPTFAPNDTNAAKIYLAFHLGCPNRFLSDESITTFYQTQNRYPEYILGRIVFIDERVASERD----NPYRLITGTTFYVLTVTA 826
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: A0A1V9Y798_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y798_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 7.700e-5 Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = 1 Query: 181 IAYRGFEVGCTALFLPT-------PHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTV 447 IA+R FE ALFLPT +LAF++G PN FL+ ES + YILGR+V I+ R AT + Y+L G + VLTV Sbjct: 1000 IAFRSFEFDDLALFLPTFAPSDVSAPKVYLAFHLGCPNRFLSDESISTFYQTQNQYPEYILGRIVFIDERVATERD----NPYRLILGTTFYVLTV 1091
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Match: W4H826_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H826_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 9.940e-5 Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 1 Query: 166 NPRSGIAYRGFEVGCTALFLPT-------PHGHFLAFNVGAPNHFLARESAQLIGHDPHFTEFYILGRVVQIERRTATNGSGVGSDHYQLPRGCDYAVLTV 447 P S IA+R F ALFLPT +LAF++G PN FL+ ES + YILGR+V I+ R A++ + Y+L G + VLTV Sbjct: 746 EPSSKIAFRSFSYSDLALFLPTFAPTDAAAAKIYLAFHLGCPNRFLSDESITTFYQMHNRYPEYILGRIVFIDERVASDRD----NPYRLIAGTTFYVLTV 842 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|51369 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18515 ID=mRNA_18515|Name=jgi.p|Trimin1|51369|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=567bp|location=Sequence derived from alignment at Contig_269:85250..86483+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAATCTGCGTGGCAGCAGTACCTCCTCAGGGGCATCGAAGACGCCATTGCback to top protein sequence of jgi.p|Trimin1|51369 >Trimin1|51369|CE51368_6 ID=Trimin1|51369|CE51368_6|Name=jgi.p|Trimin1|51369|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=172bp ESAWQQYLLRGIEDAIADATGAPGVSDRPLLTLPQGVQSLAAALAPLVLEback to top mRNA from alignment at Contig_269:85250..86483+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18515 ID=mRNA_18515|Name=jgi.p|Trimin1|51369|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1234bp|location=Sequence derived from alignment at Contig_269:85250..86483+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_269:85250..86483+ >mRNA_18515 ID=mRNA_18515|Name=jgi.p|Trimin1|51369|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=516bp|location=Sequence derived from alignment at Contig_269:85250..86483+ (Tribonema minus UTEX_B_3156 )back to top |