mRNA_18501 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354524
Unique NamemRNA_18501
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354524 vs. uniprot
Match: A0A835YZY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY3_9STRA)

HSP 1 Score: 284 bits (726), Expect = 2.770e-96
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 
Query:    1 MLAAGENFKAAXXXXXXXXXXXXXEWERVQKDSPYYLARRIDMLDSSVKDLGNRIDKQLTDLGNNVTDLRNDMDKLVFFVTILQSMAGGALAGVGITSMSDITQLFHKTPLDATCTTEAAASDSMRNEKKRRPSLPFVTPVASALPRFNSQSLQRVSFPPTS 486
            MLAAGENFKAAXXXXXXXXXXXXXEWERVQKDSPYYLARRIDMLDSSVKDLGNRIDKQLTDLGNNVTDLRNDMDKLVFFVTILQSMAGGALAGVGITSMSDITQLFHKTPLDATCTTEAAASDSMRNEKKRRPSLPFVTPVASALPRFNSQSLQRVSFPPTS
Sbjct:    1 MLAAGENFKAAXXXXXXXXXXXXXEWERVQKDSPYYLARRIDMLDSSVKDLGNRIDKQLTDLGNNVTDLRNDMDKLVFFVTILQSMAGGALAGVGITSMSDITQLFHKTPLDATCTTEAAASDSMRNEKKRRPSLPFVTPVASALPRFNSQSLQRVSFPPTS 162
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BLAST of jgi.p|Trimin1|354524 vs. uniprot
Match: A0A836CFF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFF7_9STRA)

HSP 1 Score: 213 bits (541), Expect = 3.940e-67
Identity = 140/209 (66.99%), Postives = 144/209 (68.90%), Query Frame = 1 
Query:   10 AGENFKAAXXXXXXXXXXXXXEWERVQKDSPYYLARRIDMLDSSVKDLGNRIDK-----------QLTDLGNNVTDLRNDMDKL---VFFVTILQSMAGGALAGVGI------------------------------------TSMSDITQLFHKTPLDATCTTEAAASDSMRNEKKRRPSLPFVTPVASALPRFNSQSLQRVSFPPTS 486
            AGENFKAA XXXXXXXXXXXXEWER QKD+PYYLA RIDMLDSSVKD+GNRIDK           Q TDLG NVTDL+NDMDKL   V FVT LQS A G L GVGI                                    +SMSDITQLFHKTP D TCTTEAAASDS RNEKKRRPSLPFVTPVASALPRFNSQSLQRVSFPP S
Sbjct:   23 AGENFKAATXXXXXXXXXXXXEWERAQKDNPYYLAHRIDMLDSSVKDMGNRIDKKVMXXXXXXXXQFTDLGYNVTDLKNDMDKLQPMVVFVTALQSFATGVLNGVGIMSVPACTHVVLHFAVMPPCFNHLVVGLARSAVETMRSSMSDITQLFHKTPSDVTCTTEAAASDSTRNEKKRRPSLPFVTPVASALPRFNSQSLQRVSFPPAS 231
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BLAST of jgi.p|Trimin1|354524 vs. uniprot
Match: A0A836CHG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.750e-28
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:  244 ILQSMAGGALAGVGI----TSMSDITQLFHKTPLDATCTTEAAASDSMRNEKKRRPSLPFVTPVASALPRFNSQSLQRVSFPPTS 486
            +LQ+     LA   +    +S+SDITQLFHKTP DATCTTEAAASDS RNEKKRRPSLPFVTPVAS LPRFNSQSLQRVSFPP S
Sbjct:  816 VLQAFLVAGLARSAVETMRSSISDITQLFHKTPSDATCTTEAAASDSTRNEKKRRPSLPFVTPVASTLPRFNSQSLQRVSFPPAS 900
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354524 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YZY3_9STRA2.770e-96100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFF7_9STRA3.940e-6766.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHG0_9STRA3.750e-2875.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_263contigContig_263:73762..74781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354524|estExt_Genemark1.C_Ctg_2630007
Hectar predicted targeting categoryother localisation
TranscriptId354846
TrackFilteredModels1
ProteinId354524
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354524gene_18501Tribonema minus UTEX_B_3156 geneContig_263 73762..74781 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18501_1exon_18501_1Tribonema minus UTEX_B_3156 exonContig_263 73762..74051 +
exon_18501_2exon_18501_2Tribonema minus UTEX_B_3156 exonContig_263 74583..74781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18501CDS_18501Tribonema minus UTEX_B_3156 CDSContig_263 73762..74051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354524Trimin1|354524|estExt_Genemark1.C_Ctg_2630007Tribonema minus UTEX_B_3156 polypeptideContig_263 73762..74781 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18501 ID=mRNA_18501|Name=jgi.p|Trimin1|354524|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_263:73762..74781+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCAGCTGGGGAGAACTTCAAGGCAGCTAAGGAGAACTTCAAGGC
AGCTGGGGAGAGCTCCAAGGCAGAGTGGGAGAGGGTTCAGAAAGACAGTC
CTTACTACCTGGCTCGCAGGATCGACATGCTTGATAGCAGTGTGAAGGAC
CTGGGCAACAGGATTGACAAACAGTTAACGGACCTGGGGAACAACGTGAC
AGACCTGAGGAACGATATGGACAAGCTGGTCTTCTTCGTAACTATACTGC
AGTCAATGGCCGGCGGTGCACTGGCGGGCGTCGGCATTACCAGCATGAGC
GACATCACGCAGCTGTTCCACAAGACGCCGTTGGACGCGACGTGCACCAC
CGAGGCTGCCGCTTCCGACAGCATGCGTAATGAGAAGAAGCGGCGGCCCT
CACTGCCGTTTGTCACCCCCGTCGCCAGCGCGCTGCCGCGCTTCAACTCG
CAGTCTCTGCAGCGCGTGTCATTCCCTCCGACGAGCTGA
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protein sequence of jgi.p|Trimin1|354524

>Trimin1|354524|estExt_Genemark1.C_Ctg_2630007 ID=Trimin1|354524|estExt_Genemark1.C_Ctg_2630007|Name=jgi.p|Trimin1|354524|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp
MLAAGENFKAAKENFKAAGESSKAEWERVQKDSPYYLARRIDMLDSSVKD
LGNRIDKQLTDLGNNVTDLRNDMDKLVFFVTILQSMAGGALAGVGITSMS
DITQLFHKTPLDATCTTEAAASDSMRNEKKRRPSLPFVTPVASALPRFNS
QSLQRVSFPPTS*
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mRNA from alignment at Contig_263:73762..74781+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18501 ID=mRNA_18501|Name=jgi.p|Trimin1|354524|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1020bp|location=Sequence derived from alignment at Contig_263:73762..74781+ (Tribonema minus UTEX_B_3156 )
ATGCTGGCAGCTGGGGAGAACTTCAAGGCAGCTAAGGAGAACTTCAAGGC
AGCTGGGGAGAGCTCCAAGGCAGAGTGGGAGAGGGTTCAGAAAGACAGTC
CTTACTACCTGGCTCGCAGGATCGACATGCTTGATAGCAGTGTGAAGGAC
CTGGGCAACAGGATTGACAAACAGTTAACGGACCTGGGGAACAACGTGAC
AGACCTGAGGAACGATATGGACAAGCTGGTCTTCTTCGTAACTATACTGC
AGTCAATGGCCGGCGGTGCACTGGCGGGCGTCGGCATTACGTCCATATTG
ATCTATACTTTTGGGGAGCAAATCCGTGCTCTGTAGGTACACCGTATATT
CGTATATACGCGTATAAATACCCATATCTTGACATTTGGCCCTCGATTTC
CGTCTAAACCCATTTTTAGGGGTTTATCAGGCTTCTGCCATGTGATACAC
GTTGCAATAGGCAGTGCTGGCCATCCTGTCCCTGCTTGAGCCAACGAGGC
CGGGTACTGCAGCAGACACCGGCTGGGGGCTTCGAGACCTAGAGCTCTCG
ACTCATCACAGTAGTAATTCTGCCCGTTCATGAAATCTCAATATACAGTT
TGGCCAACCCTGCCTGTATTATTTGTCGGGAATCTGCCAGTTCAGGGCCA
CTTGCGTGCTGCAAGCTTCATGATGGCATGCCATGTTTGAGTGTACACAT
GTCGTACTGCACTTTGCCGTTATGCTGCCATGCTTCAATCATCTGGTTGT
CGGGCTGGCACGGTCCGTGGTCGAAACGATGCGCAGCAGCATGAGCGAAC
CGTGGTCGAAACGATGTGCAGCAGCATGAGCGACATCACGCAGCTGTTCC
ACAAGACGCCGTTGGACGCGACGTGCACCACCGAGGCTGCCGCTTCCGAC
AGCATGCGTAATGAGAAGAAGCGGCGGCCCTCACTGCCGTTTGTCACCCC
CGTCGCCAGCGCGCTGCCGCGCTTCAACTCGCAGTCTCTGCAGCGCGTGT
CATTCCCTCCGACGAGCTGA
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Coding sequence (CDS) from alignment at Contig_263:73762..74781+

>mRNA_18501 ID=mRNA_18501|Name=jgi.p|Trimin1|354524|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_263:73762..74781+ (Tribonema minus UTEX_B_3156 )
ATGCTGGCAGCTGGGGAGAACTTCAAGGCAGCTAAGGAGAACTTCAAGGC
AGCTGGGGAGAGCTCCAAGGCAGAGTGGGAGAGGGTTCAGAAAGACAGTC
CTTACTACCTGGCTCGCAGGATCGACATGCTTGATAGCAGTGTGAAGGAC
CTGGGCAACAGGATTGACAAACAGTTAACGGACCTGGGGAACAACGTGAC
AGACCTGAGGAACGATATGGACAAGCTGGTCTTCTTCGTAACTATACTGC
AGTCAATGGCCGGCGGTGCACTGGCGGGCGTCGGCATTACCAGCATGAGC
GACATCACGCAGCTGTTCCACAAGACGCCGTTGGACGCGACGTGCACCAC
CGAGGCTGCCGCTTCCGACAGCATGCGTAATGAGAAGAAGCGGCGGCCCT
CACTGCCGTTTGTCACCCCCGTCGCCAGCGCGCTGCCGCGCTTCAACTCG
CAGTCTCTGCAGCGCGTGTCATTCCCTCCGACGAGCTGA
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