mRNA_18487 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133894
Unique NamemRNA_18487
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835YXZ8_9STRA (CBD_IV domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ8_9STRA)

HSP 1 Score: 459 bits (1181), Expect = 2.520e-163
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1
Query:    1 MVMHCHIAQHSDDGILKVSQIAGTQPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNSDAGFSLDSLQLDACGNTVAQCKKL 699
            MVMHCHIAQHSDDGILKVSQIAGTQPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNSDAGFSLDSLQLDACGNTVAQCKKL
Sbjct:    1 MVMHCHIAQHSDDGILKVSQIAGTQPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNSDAGFSLDSLQLDACGNTVAQCKKL 233          
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA)

HSP 1 Score: 229 bits (585), Expect = 7.730e-66
Identity = 132/237 (55.70%), Postives = 162/237 (68.35%), Query Frame = 1
Query:    4 VMHCHIAQHSDDGILKVSQI--AGTQPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTA-QAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATA---FMLPQGAHTLTLCFN-SDAGFSLDSLQLDACGNTVAQCK 693
            VMHCHIA+HSD GI+ V  +    T    P V ++GTC  A P STPY     A +PGT++AE+FDLGGE +AYHNINI RGAPSA RVGEA+VEID +G + A+TYIR GEWL+Y+V   +AG Y VAL+VAAAAR   Q   +GM+WSL+LD  AG+ CPAPGA  +L+ V D  WNG+GGA+ FA Y  A A   F LP G HTLTLCF  + A +S DS  +  CG T   C+
Sbjct:  853 VMHCHIAEHSDMGIMAVMYVRYGSTAKPFPYVKNWGTCPKAEPVSTPYGGNA-AKLPGTIEAEAFDLGGEAVAYHNINIDRGAPSAMRVGEASVEIDNIGAAKAITYIRDGEWLKYTVNVTKAGTYFVALNVAAAARPKGQA-PLGMHWSLWLD--AGNFCPAPGAKGQLLRVEDAAWNGTGGAVAFAAYAPAAALNAFTLPAGIHTLTLCFEGAAANYSFDSFTVTNCGATPGVCR 1085          
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835YQ52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ52_9STRA)

HSP 1 Score: 222 bits (566), Expect = 2.030e-63
Identity = 133/244 (54.51%), Postives = 156/244 (63.93%), Query Frame = 1
Query:    1 MVMHCHIAQHSDDGILKV---------------SQIAGTQPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLG----NSLAVTYIRSGEWLRYSVT-AQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFM--LPQGAHTLTLCFNSDAGFSLDSLQLDA 666
            M++HCHIAQHSD G+ KV               + IA   P    V D+GTC A +P STP+N   PAAVPG +QAE FDLGGEGIAYHNIN+ RGAP A R GEA+VEID +        AV YIR GEWL+YSV  A AG YT +L VAAA         +GM+WSL+LDV  G  CPAPG   +L+ VADD+WNG+GGAL FA Y  A  FM  L  G HT+TLCF  +AGF LDSL + A
Sbjct:  752 MMIHCHIAQHSDLGVTKVMNIVPNPAAIAPLAAAPIAAGGPADIQVADWGTCPALIPASTPFNVGAPAAVPGVIQAEEFDLGGEGIAYHNINLDRGAPPAMRAGEASVEIDTIAVGKAQVTAVGYIRDGEWLKYSVNIAAAGFYTASLTVAAAPAPLLT--PLGMHWSLWLDVDGG--CPAPGTPGKLLTVADDKWNGTGGALVFAAYD-APGFMRILAPGPHTITLCFEGNAGFELDSLTIAA 990          
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.630e-50
Identity = 121/241 (50.21%), Postives = 150/241 (62.24%), Query Frame = 1
Query:    1 MVMHCHIAQHSDDGILKVSQIAGTQP---TTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTY---IRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVP----AGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNS-DAGFSLDSLQLDACGNTVAQC 690
            MVMHCHIAQHSD+G++ ++ I G        P V DFGTC AA+P STPY    PAAVPG +QAE+FD GGEG+AYHN N+ R   +AAR+ +AAVE+D L  +L  T+   IRSGEW+RYSV   A AY   + V AA  +   G    M ++L++DV     AG   PAPGA    V VAD  + G+G  + FAPY V     LP GAH LTLCF++ DA  +LDS    ACG T A C
Sbjct:  723 MVMHCHIAQHSDNGVIGIANILGNGADGEAPPTVVDFGTCPAALPASTPYLPL-PAAVPGVIQAENFDKGGEGVAYHNKNVDRNQGNAARL-DAAVEVDTLP-ALQTTFVGLIRSGEWMRYSVNVAAAAY-YQMTVTAATAAPLNG----MAFTLWVDVEGCPAAGQAVPAPGA--MAVNVADAAYAGTGSYIVFAPYVVQQPVQLPAGAHVLTLCFDAGDAAINLDSFAFAACGATAAAC 953          
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.270e-49
Identity = 117/232 (50.43%), Postives = 141/232 (60.78%), Query Frame = 1
Query:    1 MVMHCHIAQHSDDGILKVSQIAGTQPTT---PDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVT-AQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPG-ADNELVA-VADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNS--DAGFSLDSLQLDACG 672
            MVMHCHIA+HSD G+L V++I G        P VTDFGTC A + DSTPY       +PGT+QAE FD GGEGIAYHN+N  R   +A R     VE+   G +  V  +++ EWLRYSV+ A AGAYTV L   A           G++WSL+LDVPAG GCP    AD  L+A V  D + GSG    FAPYT   AF+LP GAH LTLCF+   D   +LD+L L  CG
Sbjct:  980 MVMHCHIAEHSDMGLLAVAKITGIGSGALDPPGVTDFGTCPADLRDSTPYGLDA-VQIPGTIQAEEFDRGGEGIAYHNVNDDRLQGNALRA-VTGVEVRASGTTAWVEGVKATEWLRYSVSVAAAGAYTVTLSAGALTPLKR-----GLSWSLWLDVPAGQGCPPRAQADGRLIAAVGADDFVGSGALTTFAPYTPRAAFVLPLGAHALTLCFDESYDGRLALDALTLARCG 1204          
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.340e-32
Identity = 110/287 (38.33%), Postives = 138/287 (48.08%), Query Frame = 1
Query:    1 MVMHCHIAQHSDDGILKVSQIAGTQP---TTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDL------------------------------GGEGIAYHNINIARGAPSAARVGEAAVE---IDQLGNSLA---------VTYIRSGEWLRYSVTA---QAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCP-APGADNELVAVADDQWNGSGGALKFAPYTV-ATAFMLPQGAHTLTLCFN-------SDAGFSLDSLQLDACGNTVAQC 690
            MVMHCHIA+HSD G++ V++I G       +P VT+ GTC   VP STP+     A VPG +QAE FD                               GGEGIAYHN N    A +       AVE   I     + A         VT IR GEWLR+SV      AG Y + L +AAA         + + ++L+LD     GCP +  A+  LVA++D  + GSGGA  FAPY      F LP G H LTLCF+       +D G +LDSL L  CG + A C
Sbjct: 1014 MVMHCHIAEHSDLGVIGVAKINGQGQGPVDSPAVTNHGTCPKDVPLSTPFKNTH-ANVPGIIQAEHFDNKERVTSHKWSPLLTPPSCPLRNSQAEHFDNGGEGIAYHNFNTDTNAAANPLRPNTAVETVIIPTAAPAAAAPAPPAAAYVTAIRGGEWLRWSVNVPAPNAGGYALTLSIAAATP-------VPLEFTLWLDSA---GCPPSEQAEGRLVALSDANYGGSGGAAAFAPYAPQGQPFALPPGPHALTLCFDGADTIVGADTGLALDSLTLTRCGASAAAC 1289          
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A836CFR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR8_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.310e-32
Identity = 80/189 (42.33%), Postives = 105/189 (55.56%), Query Frame = 1
Query:  154 PAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAG--DGCPAPGADNELVAVADDQW-----NGSGG--ALKFAPYTVATAFMLPQGAHTLTLCFNSDAGFSLDSLQLDACGNTVAQCK 693
            P  VPG ++AE+FD                 P++   G+  V I  L  + A+T + +G+ LRYSV+A  GAYTVAL VA  + S +   A  M W+LFLD+PAG    CP  G  +E+  V D  W     N SGG  A  +  Y   T FML Q  HTLTLCFN DAG+++DSL+L  CGN V +C+
Sbjct:   74 PIRVPGIIEAEAFD-----------------PASGTTGD--VNIAHLDGADAITNMHAGDALRYSVSALVGAYTVALRVAPLSSSGSGSSAQSMRWALFLDIPAGAPSPCPPAGDASEIAFVDDAAWDKATKNKSGGSSAQGYVRYVADTPFMLTQAVHTLTLCFNGDAGYAVDSLELSGCGNNVIECQ 243          
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A836C7C1_9STRA (Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.840e-25
Identity = 85/242 (35.12%), Postives = 118/242 (48.76%), Query Frame = 1
Query:    1 MVMHCHIAQHSDDGILKVSQIAGTQ--PTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIAR----------GAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTAQA-GAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTV------ATAFMLPQGAHTLTLCFNS-DAGFSLDSLQLDA 666
            MV+HCH+A+H+D+G+  V+ +AG    P    V D+GTC     ++TP+  +         +A  FD G +G+AYHNI   R          G           V+ID   +   VT IR GE+LRY++     GAY  A  +A       +  A G++W LFLDVP G GCP PG+  +L      +W GSG      P  V      +    L  G HTLTLCF++ D  F L  ++L A
Sbjct:  565 MVVHCHVAEHADNGMSAVATVAGPDDPPDAFTVVDYGTCTTPPAETTPFFDQVYQIDGSKKRAMFFDNGKDGVAYHNIISGRRKELYVETKLGQNVRRDSSTVEVDIDPQNSEFYVTEIRPGEFLRYTINVPTTGAYQFATYIAVPIPPPNRP-APGISWGLFLDVPPGGGCPPPGSPGDLFHAYSARWRGSGPPPPAKPVIVKFPANGSWDIDLEAGLHTLTLCFDTFDRTFDLYYIELKA 805          
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A836CQZ2_9STRA (Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQZ2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.070e-24
Identity = 91/245 (37.14%), Postives = 123/245 (50.20%), Query Frame = 1
Query:    1 MVMHCHIAQHSDDGILKVSQIAG-----TQPTT-PDVTDFGTCAAAVPDS--TPYN------AKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPS--------AARVGEAAVEIDQ--LGNSLAVTYIRSGEWLRYSVTAQA-GAYTVALDVAAAARSAAQGGAIG----MNWSLFLDVPAGDGCPAPGADNE--LVAVADDQWNGSGGALKFAPYTV--ATAFMLPQGAHTLTLCFNSDAG 636
            MV+HCH+ +H+D G+  V+ IA      T P   P + D GTC     D+  TPYN      + G A +P       FD GGEGIAYHN+NIA   P+          R  +AAVE+D   L     V +IR+GEWL+Y+++    G       + AA      G  +G    M++SL+LD    DGCPAPG  ++  L  V D +W G+    +  PY       F +PQG HT+TLCF    G
Sbjct:  508 MVLHCHVQKHADGGMAAVANIAHHFQDYTGPLDDPTMYDSGTCCCPPADTKRTPYNDAPFFVSTGGATIPAVF----FDRGGEGIAYHNLNIAPHKPTYLELTSLPPIRDDDAAVEMDYDPLLKDNHVAFIRNGEWLKYTISVYPPGGSWYKASIGAALVLPPNGFVVGHGPGMHYSLWLDNDQ-DGCPAPGQTSKGWLATVNDSEWAGAR-VDRIQPYPADGTLKFHIPQGEHTVTLCFEGSVG 746          
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835YXW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 9.970e-22
Identity = 87/254 (34.25%), Postives = 115/254 (45.28%), Query Frame = 1
Query:    1 MVMHCHIAQHSDDGILKVSQIAGT-----QPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGA----PSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTA-QAGAYTVAL-----------DVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPA-PGADNELVA-VADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNSD-AGFSLDSLQLDACGNTVAQC 690
            M++HCHI  H+D G++ V  I G       P      DFGTC   VP S P+    PA +PG ++AE FD GG+ IAY N N    A    P +    E     D  G + +VT IR+GEWL+Y+V   Q G Y + +             A  A  +   G  G++WSL+    +   CP  P     LV+ VAD     S  A  +  Y       L  G  TL LCF+ D     +DSL L  C  + A C
Sbjct:  384 MIIHCHITSHADQGMMAVFNIKGKGADALSPPQVAAGDFGTCPFLVPQSAPFRGT-PATIPGVIEAEQFDTGGQNIAYWNDNTDDLAGPVPPRSLEAVEVVASTD--GATTSVTSIRAGEWLKYTVNVEQTGTYGLTMFSVRREGSTSSTYALVATLSTGPGRKGVSWSLWSGQRS---CPTDPKETTGLVSRVADSNLKLSDDADVYGAYVAPEPAALTAGPQTLLLCFDKDMVNARIDSLALRYCAASAALC 631          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXZ8_9STRA2.520e-163100.00CBD_IV domain-containing protein (Fragment) n=1 Ta... [more]
A0A835ZCB5_9STRA7.730e-6655.70CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YQ52_9STRA2.030e-6354.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZH56_9STRA1.630e-5050.21CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CK08_9STRA1.270e-4950.43Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YVH6_9STRA3.340e-3238.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFR8_9STRA5.310e-3242.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C7C1_9STRA4.840e-2535.12Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A836CQZ2_9STRA4.070e-2437.14Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835YXW7_9STRA9.970e-2234.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_272contigContig_272:21041..21739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133894|gw1.272.3.1
DescriptionF5/8 type C domain
COG categoryG
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG1472@1|root,COG1472@2|Bacteria,2I34M@201174|Actinobacteria
Evalue5.96e-10
Seed ortholog479433.Caci_7479
Hectar predicted targeting categoryother localisation
TranscriptId134216
TrackFilteredModels1
ProteinId133894
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133894gene_18487Tribonema minus UTEX_B_3156 geneContig_272 21041..21739 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18487_1exon_18487_1Tribonema minus UTEX_B_3156 exonContig_272 21041..21739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18487CDS_18487Tribonema minus UTEX_B_3156 CDSContig_272 21041..21739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133894Trimin1|133894|gw1.272.3.1Tribonema minus UTEX_B_3156 polypeptideContig_272 21041..21739 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18487 ID=mRNA_18487|Name=jgi.p|Trimin1|133894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_272:21041..21739+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATGCACTGCCACATTGCTCAGCACTCCGACGACGGCATCCTCAA
GGTGTCGCAGATTGCGGGCACGCAGCCCACCACTCCCGACGTCACCGACT
TTGGCACGTGCGCTGCAGCTGTGCCCGACAGCACGCCCTACAACGCCAAG
GGCCCCGCCGCCGTCCCCGGCACCCTGCAAGCCGAGTCCTTTGACCTCGG
CGGCGAGGGCATTGCCTACCACAACATCAACATCGCCCGGGGCGCGCCCT
CCGCGGCGCGCGTCGGCGAGGCAGCGGTGGAGATTGACCAGCTCGGCAAC
TCGCTGGCGGTCACCTACATCCGCAGCGGCGAGTGGCTGCGCTACAGCGT
CACGGCGCAGGCCGGCGCGTACACGGTGGCGCTGGACGTCGCCGCCGCTG
CACGCAGCGCTGCTCAGGGCGGCGCCATCGGCATGAACTGGTCGCTCTTC
CTAGACGTGCCCGCGGGCGACGGCTGCCCCGCACCCGGCGCCGACAACGA
GCTCGTAGCCGTGGCGGACGACCAGTGGAACGGCAGCGGCGGCGCGCTCA
AGTTTGCGCCGTACACGGTCGCCACGGCGTTCATGCTGCCGCAGGGCGCG
CACACCCTCACGCTGTGCTTCAACAGCGACGCGGGGTTCTCCCTTGACAG
CCTGCAGCTCGACGCGTGCGGCAACACCGTGGCACAGTGCAAGAAGCTG
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protein sequence of jgi.p|Trimin1|133894

>Trimin1|133894|gw1.272.3.1 ID=Trimin1|133894|gw1.272.3.1|Name=jgi.p|Trimin1|133894|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=233bp
MVMHCHIAQHSDDGILKVSQIAGTQPTTPDVTDFGTCAAAVPDSTPYNAK
GPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGN
SLAVTYIRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLF
LDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFMLPQGA
HTLTLCFNSDAGFSLDSLQLDACGNTVAQCKKL
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mRNA from alignment at Contig_272:21041..21739+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18487 ID=mRNA_18487|Name=jgi.p|Trimin1|133894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_272:21041..21739+ (Tribonema minus UTEX_B_3156 )
ATGGTCATGCACTGCCACATTGCTCAGCACTCCGACGACGGCATCCTCAA GGTGTCGCAGATTGCGGGCACGCAGCCCACCACTCCCGACGTCACCGACT TTGGCACGTGCGCTGCAGCTGTGCCCGACAGCACGCCCTACAACGCCAAG GGCCCCGCCGCCGTCCCCGGCACCCTGCAAGCCGAGTCCTTTGACCTCGG CGGCGAGGGCATTGCCTACCACAACATCAACATCGCCCGGGGCGCGCCCT CCGCGGCGCGCGTCGGCGAGGCAGCGGTGGAGATTGACCAGCTCGGCAAC TCGCTGGCGGTCACCTACATCCGCAGCGGCGAGTGGCTGCGCTACAGCGT CACGGCGCAGGCCGGCGCGTACACGGTGGCGCTGGACGTCGCCGCCGCTG CACGCAGCGCTGCTCAGGGCGGCGCCATCGGCATGAACTGGTCGCTCTTC CTAGACGTGCCCGCGGGCGACGGCTGCCCCGCACCCGGCGCCGACAACGA GCTCGTAGCCGTGGCGGACGACCAGTGGAACGGCAGCGGCGGCGCGCTCA AGTTTGCGCCGTACACGGTCGCCACGGCGTTCATGCTGCCGCAGGGCGCG CACACCCTCACGCTGTGCTTCAACAGCGACGCGGGGTTCTCCCTTGACAG CCTGCAGCTCGACGCGTGCGGCAACACCGTGGCACAGTGCAAGAAGCTG
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Coding sequence (CDS) from alignment at Contig_272:21041..21739+

>mRNA_18487 ID=mRNA_18487|Name=jgi.p|Trimin1|133894|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=699bp|location=Sequence derived from alignment at Contig_272:21041..21739+ (Tribonema minus UTEX_B_3156 )
ATGGTCATGCACTGCCACATTGCTCAGCACTCCGACGACGGCATCCTCAA
GGTGTCGCAGATTGCGGGCACGCAGCCCACCACTCCCGACGTCACCGACT
TTGGCACGTGCGCTGCAGCTGTGCCCGACAGCACGCCCTACAACGCCAAG
GGCCCCGCCGCCGTCCCCGGCACCCTGCAAGCCGAGTCCTTTGACCTCGG
CGGCGAGGGCATTGCCTACCACAACATCAACATCGCCCGGGGCGCGCCCT
CCGCGGCGCGCGTCGGCGAGGCAGCGGTGGAGATTGACCAGCTCGGCAAC
TCGCTGGCGGTCACCTACATCCGCAGCGGCGAGTGGCTGCGCTACAGCGT
CACGGCGCAGGCCGGCGCGTACACGGTGGCGCTGGACGTCGCCGCCGCTG
CACGCAGCGCTGCTCAGGGCGGCGCCATCGGCATGAACTGGTCGCTCTTC
CTAGACGTGCCCGCGGGCGACGGCTGCCCCGCACCCGGCGCCGACAACGA
GCTCGTAGCCGTGGCGGACGACCAGTGGAACGGCAGCGGCGGCGCGCTCA
AGTTTGCGCCGTACACGGTCGCCACGGCGTTCATGCTGCCGCAGGGCGCG
CACACCCTCACGCTGTGCTTCAACAGCGACGCGGGGTTCTCCCTTGACAG
CCTGCAGCTCGACGCGTGCGGCAACACCGTGGCACAGTGCAAGAAGCTG
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