mRNA_18487 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835YXZ8_9STRA (CBD_IV domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ8_9STRA) HSP 1 Score: 459 bits (1181), Expect = 2.520e-163 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1 Query: 1 MVMHCHIAQHSDDGILKVSQIAGTQPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNSDAGFSLDSLQLDACGNTVAQCKKL 699 MVMHCHIAQHSDDGILKVSQIAGTQPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNSDAGFSLDSLQLDACGNTVAQCKKL Sbjct: 1 MVMHCHIAQHSDDGILKVSQIAGTQPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNSDAGFSLDSLQLDACGNTVAQCKKL 233
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA) HSP 1 Score: 229 bits (585), Expect = 7.730e-66 Identity = 132/237 (55.70%), Postives = 162/237 (68.35%), Query Frame = 1 Query: 4 VMHCHIAQHSDDGILKVSQI--AGTQPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTA-QAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATA---FMLPQGAHTLTLCFN-SDAGFSLDSLQLDACGNTVAQCK 693 VMHCHIA+HSD GI+ V + T P V ++GTC A P STPY A +PGT++AE+FDLGGE +AYHNINI RGAPSA RVGEA+VEID +G + A+TYIR GEWL+Y+V +AG Y VAL+VAAAAR Q +GM+WSL+LD AG+ CPAPGA +L+ V D WNG+GGA+ FA Y A A F LP G HTLTLCF + A +S DS + CG T C+ Sbjct: 853 VMHCHIAEHSDMGIMAVMYVRYGSTAKPFPYVKNWGTCPKAEPVSTPYGGNA-AKLPGTIEAEAFDLGGEAVAYHNINIDRGAPSAMRVGEASVEIDNIGAAKAITYIRDGEWLKYTVNVTKAGTYFVALNVAAAARPKGQA-PLGMHWSLWLD--AGNFCPAPGAKGQLLRVEDAAWNGTGGAVAFAAYAPAAALNAFTLPAGIHTLTLCFEGAAANYSFDSFTVTNCGATPGVCR 1085
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835YQ52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ52_9STRA) HSP 1 Score: 222 bits (566), Expect = 2.030e-63 Identity = 133/244 (54.51%), Postives = 156/244 (63.93%), Query Frame = 1 Query: 1 MVMHCHIAQHSDDGILKV---------------SQIAGTQPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLG----NSLAVTYIRSGEWLRYSVT-AQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFM--LPQGAHTLTLCFNSDAGFSLDSLQLDA 666 M++HCHIAQHSD G+ KV + IA P V D+GTC A +P STP+N PAAVPG +QAE FDLGGEGIAYHNIN+ RGAP A R GEA+VEID + AV YIR GEWL+YSV A AG YT +L VAAA +GM+WSL+LDV G CPAPG +L+ VADD+WNG+GGAL FA Y A FM L G HT+TLCF +AGF LDSL + A Sbjct: 752 MMIHCHIAQHSDLGVTKVMNIVPNPAAIAPLAAAPIAAGGPADIQVADWGTCPALIPASTPFNVGAPAAVPGVIQAEEFDLGGEGIAYHNINLDRGAPPAMRAGEASVEIDTIAVGKAQVTAVGYIRDGEWLKYSVNIAAAGFYTASLTVAAAPAPLLT--PLGMHWSLWLDVDGG--CPAPGTPGKLLTVADDKWNGTGGALVFAAYD-APGFMRILAPGPHTITLCFEGNAGFELDSLTIAA 990
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA) HSP 1 Score: 186 bits (472), Expect = 1.630e-50 Identity = 121/241 (50.21%), Postives = 150/241 (62.24%), Query Frame = 1 Query: 1 MVMHCHIAQHSDDGILKVSQIAGTQP---TTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTY---IRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVP----AGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNS-DAGFSLDSLQLDACGNTVAQC 690 MVMHCHIAQHSD+G++ ++ I G P V DFGTC AA+P STPY PAAVPG +QAE+FD GGEG+AYHN N+ R +AAR+ +AAVE+D L +L T+ IRSGEW+RYSV A AY + V AA + G M ++L++DV AG PAPGA V VAD + G+G + FAPY V LP GAH LTLCF++ DA +LDS ACG T A C Sbjct: 723 MVMHCHIAQHSDNGVIGIANILGNGADGEAPPTVVDFGTCPAALPASTPYLPL-PAAVPGVIQAENFDKGGEGVAYHNKNVDRNQGNAARL-DAAVEVDTLP-ALQTTFVGLIRSGEWMRYSVNVAAAAY-YQMTVTAATAAPLNG----MAFTLWVDVEGCPAAGQAVPAPGA--MAVNVADAAYAGTGSYIVFAPYVVQQPVQLPAGAHVLTLCFDAGDAAINLDSFAFAACGATAAAC 953
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.270e-49 Identity = 117/232 (50.43%), Postives = 141/232 (60.78%), Query Frame = 1 Query: 1 MVMHCHIAQHSDDGILKVSQIAGTQPTT---PDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVT-AQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPG-ADNELVA-VADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNS--DAGFSLDSLQLDACG 672 MVMHCHIA+HSD G+L V++I G P VTDFGTC A + DSTPY +PGT+QAE FD GGEGIAYHN+N R +A R VE+ G + V +++ EWLRYSV+ A AGAYTV L A G++WSL+LDVPAG GCP AD L+A V D + GSG FAPYT AF+LP GAH LTLCF+ D +LD+L L CG Sbjct: 980 MVMHCHIAEHSDMGLLAVAKITGIGSGALDPPGVTDFGTCPADLRDSTPYGLDA-VQIPGTIQAEEFDRGGEGIAYHNVNDDRLQGNALRA-VTGVEVRASGTTAWVEGVKATEWLRYSVSVAAAGAYTVTLSAGALTPLKR-----GLSWSLWLDVPAGQGCPPRAQADGRLIAAVGADDFVGSGALTTFAPYTPRAAFVLPLGAHALTLCFDESYDGRLALDALTLARCG 1204
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA) HSP 1 Score: 134 bits (336), Expect = 3.340e-32 Identity = 110/287 (38.33%), Postives = 138/287 (48.08%), Query Frame = 1 Query: 1 MVMHCHIAQHSDDGILKVSQIAGTQP---TTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDL------------------------------GGEGIAYHNINIARGAPSAARVGEAAVE---IDQLGNSLA---------VTYIRSGEWLRYSVTA---QAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCP-APGADNELVAVADDQWNGSGGALKFAPYTV-ATAFMLPQGAHTLTLCFN-------SDAGFSLDSLQLDACGNTVAQC 690 MVMHCHIA+HSD G++ V++I G +P VT+ GTC VP STP+ A VPG +QAE FD GGEGIAYHN N A + AVE I + A VT IR GEWLR+SV AG Y + L +AAA + + ++L+LD GCP + A+ LVA++D + GSGGA FAPY F LP G H LTLCF+ +D G +LDSL L CG + A C Sbjct: 1014 MVMHCHIAEHSDLGVIGVAKINGQGQGPVDSPAVTNHGTCPKDVPLSTPFKNTH-ANVPGIIQAEHFDNKERVTSHKWSPLLTPPSCPLRNSQAEHFDNGGEGIAYHNFNTDTNAAANPLRPNTAVETVIIPTAAPAAAAPAPPAAAYVTAIRGGEWLRWSVNVPAPNAGGYALTLSIAAATP-------VPLEFTLWLDSA---GCPPSEQAEGRLVALSDANYGGSGGAAAFAPYAPQGQPFALPPGPHALTLCFDGADTIVGADTGLALDSLTLTRCGASAAAC 1289
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A836CFR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR8_9STRA) HSP 1 Score: 127 bits (318), Expect = 5.310e-32 Identity = 80/189 (42.33%), Postives = 105/189 (55.56%), Query Frame = 1 Query: 154 PAAVPGTLQAESFDLGGEGIAYHNINIARGAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTAQAGAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAG--DGCPAPGADNELVAVADDQW-----NGSGG--ALKFAPYTVATAFMLPQGAHTLTLCFNSDAGFSLDSLQLDACGNTVAQCK 693 P VPG ++AE+FD P++ G+ V I L + A+T + +G+ LRYSV+A GAYTVAL VA + S + A M W+LFLD+PAG CP G +E+ V D W N SGG A + Y T FML Q HTLTLCFN DAG+++DSL+L CGN V +C+ Sbjct: 74 PIRVPGIIEAEAFD-----------------PASGTTGD--VNIAHLDGADAITNMHAGDALRYSVSALVGAYTVALRVAPLSSSGSGSSAQSMRWALFLDIPAGAPSPCPPAGDASEIAFVDDAAWDKATKNKSGGSSAQGYVRYVADTPFMLTQAVHTLTLCFNGDAGYAVDSLELSGCGNNVIECQ 243
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A836C7C1_9STRA (Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C1_9STRA) HSP 1 Score: 113 bits (282), Expect = 4.840e-25 Identity = 85/242 (35.12%), Postives = 118/242 (48.76%), Query Frame = 1 Query: 1 MVMHCHIAQHSDDGILKVSQIAGTQ--PTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIAR----------GAPSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTAQA-GAYTVALDVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPAPGADNELVAVADDQWNGSGGALKFAPYTV------ATAFMLPQGAHTLTLCFNS-DAGFSLDSLQLDA 666 MV+HCH+A+H+D+G+ V+ +AG P V D+GTC ++TP+ + +A FD G +G+AYHNI R G V+ID + VT IR GE+LRY++ GAY A +A + A G++W LFLDVP G GCP PG+ +L +W GSG P V + L G HTLTLCF++ D F L ++L A Sbjct: 565 MVVHCHVAEHADNGMSAVATVAGPDDPPDAFTVVDYGTCTTPPAETTPFFDQVYQIDGSKKRAMFFDNGKDGVAYHNIISGRRKELYVETKLGQNVRRDSSTVEVDIDPQNSEFYVTEIRPGEFLRYTINVPTTGAYQFATYIAVPIPPPNRP-APGISWGLFLDVPPGGGCPPPGSPGDLFHAYSARWRGSGPPPPAKPVIVKFPANGSWDIDLEAGLHTLTLCFDTFDRTFDLYYIELKA 805
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A836CQZ2_9STRA (Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQZ2_9STRA) HSP 1 Score: 110 bits (275), Expect = 4.070e-24 Identity = 91/245 (37.14%), Postives = 123/245 (50.20%), Query Frame = 1 Query: 1 MVMHCHIAQHSDDGILKVSQIAG-----TQPTT-PDVTDFGTCAAAVPDS--TPYN------AKGPAAVPGTLQAESFDLGGEGIAYHNINIARGAPS--------AARVGEAAVEIDQ--LGNSLAVTYIRSGEWLRYSVTAQA-GAYTVALDVAAAARSAAQGGAIG----MNWSLFLDVPAGDGCPAPGADNE--LVAVADDQWNGSGGALKFAPYTV--ATAFMLPQGAHTLTLCFNSDAG 636 MV+HCH+ +H+D G+ V+ IA T P P + D GTC D+ TPYN + G A +P FD GGEGIAYHN+NIA P+ R +AAVE+D L V +IR+GEWL+Y+++ G + AA G +G M++SL+LD DGCPAPG ++ L V D +W G+ + PY F +PQG HT+TLCF G Sbjct: 508 MVLHCHVQKHADGGMAAVANIAHHFQDYTGPLDDPTMYDSGTCCCPPADTKRTPYNDAPFFVSTGGATIPAVF----FDRGGEGIAYHNLNIAPHKPTYLELTSLPPIRDDDAAVEMDYDPLLKDNHVAFIRNGEWLKYTISVYPPGGSWYKASIGAALVLPPNGFVVGHGPGMHYSLWLDNDQ-DGCPAPGQTSKGWLATVNDSEWAGAR-VDRIQPYPADGTLKFHIPQGEHTVTLCFEGSVG 746
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Match: A0A835YXW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW7_9STRA) HSP 1 Score: 103 bits (257), Expect = 9.970e-22 Identity = 87/254 (34.25%), Postives = 115/254 (45.28%), Query Frame = 1 Query: 1 MVMHCHIAQHSDDGILKVSQIAGT-----QPTTPDVTDFGTCAAAVPDSTPYNAKGPAAVPGTLQAESFDLGGEGIAYHNINIARGA----PSAARVGEAAVEIDQLGNSLAVTYIRSGEWLRYSVTA-QAGAYTVAL-----------DVAAAARSAAQGGAIGMNWSLFLDVPAGDGCPA-PGADNELVA-VADDQWNGSGGALKFAPYTVATAFMLPQGAHTLTLCFNSD-AGFSLDSLQLDACGNTVAQC 690 M++HCHI H+D G++ V I G P DFGTC VP S P+ PA +PG ++AE FD GG+ IAY N N A P + E D G + +VT IR+GEWL+Y+V Q G Y + + A A + G G++WSL+ + CP P LV+ VAD S A + Y L G TL LCF+ D +DSL L C + A C Sbjct: 384 MIIHCHITSHADQGMMAVFNIKGKGADALSPPQVAAGDFGTCPFLVPQSAPFRGT-PATIPGVIEAEQFDTGGQNIAYWNDNTDDLAGPVPPRSLEAVEVVASTD--GATTSVTSIRAGEWLKYTVNVEQTGTYGLTMFSVRREGSTSSTYALVATLSTGPGRKGVSWSLWSGQRS---CPTDPKETTGLVSRVADSNLKLSDDADVYGAYVAPEPAALTAGPQTLLLCFDKDMVNARIDSLALRYCAASAALC 631 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18487 ID=mRNA_18487|Name=jgi.p|Trimin1|133894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_272:21041..21739+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTCATGCACTGCCACATTGCTCAGCACTCCGACGACGGCATCCTCAAback to top protein sequence of jgi.p|Trimin1|133894 >Trimin1|133894|gw1.272.3.1 ID=Trimin1|133894|gw1.272.3.1|Name=jgi.p|Trimin1|133894|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=233bp MVMHCHIAQHSDDGILKVSQIAGTQPTTPDVTDFGTCAAAVPDSTPYNAKback to top mRNA from alignment at Contig_272:21041..21739+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18487 ID=mRNA_18487|Name=jgi.p|Trimin1|133894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_272:21041..21739+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_272:21041..21739+ >mRNA_18487 ID=mRNA_18487|Name=jgi.p|Trimin1|133894|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=699bp|location=Sequence derived from alignment at Contig_272:21041..21739+ (Tribonema minus UTEX_B_3156 )back to top |