mRNA_18486 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133309
Unique NamemRNA_18486
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835Z252_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z252_9STRA)

HSP 1 Score: 318 bits (815), Expect = 2.130e-110
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
Query:    1 RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438
            RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS
Sbjct:    1 RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 146          
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.090e-42
Identity = 75/149 (50.34%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 RCPTAGVTYNVQYQHLG---DAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438
            RCPT    + + Y+ +G    AAAP V   + TI V PS R AA DLP W PCRPAYL D+ TLP   +   + LDVR+ LN   F GP E F    +G+AQPW+V G D+HP H H+N M  G    GNQW+Q+PGWN  GDW+DT+S
Sbjct:  815 RCPTQWEHHILTYERIGAPPSAAAPRVAHPL-TIVVAPSARDAAPDLPLWSPCRPAYLTDLYTLPPTSLAKLYPLDVRESLNGAVFVGPDEYFTELPIGVAQPWSVSGDDIHPLHVHVNKMQWGADTAGNQWDQVPGWNAPGDWVDTLS 962          
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.950e-40
Identity = 72/147 (48.98%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    1 RCPTAGVTYNVQYQHLGDAAAP-EVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438
            +C  AGV +NV Y H+GD  A     P IATITV P +RP AD LP W PCRP YL D   +P+   G  F L VRD LN +KFT P       +    + W + GSD HP H H++HM LG VG  NQW   P WN+ GDW+D+IS
Sbjct:  688 KCFVAGVVHNVAYAHVGDVGAEVAAAPTIATITVTPFLRPPADPLPLWAPCRPGYLTDARKVPRRLRGPPFDLTVRDALNGQKFTSPDTYIRTMSNRNLEAWQITGSDKHPLHIHVDHMQLGAVGVTNQWPGAPNWNMPGDWVDSIS 834          
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA)

HSP 1 Score: 152 bits (383), Expect = 7.370e-40
Identity = 75/148 (50.68%), Postives = 93/148 (62.84%), Query Frame = 1
Query:    1 RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYL-VDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGE-VGDGNQWNQIPGWNVAGDWIDTIS 438
            RCPTAG  + +   H+ D AAPE    + TITV PS+R AADDLP W PCRPAYL  DI+ LP+  +     L+VR+G+  + F+          LG AQ WT+ GSDLHPFH H+NHM LG  +G  N W  +PGW   GD+IDTIS
Sbjct:  559 RCPTAGKAHTLAMMHINDPAAPEAPVPLVTITVVPSLRDAADDLPAWGPCRPAYLPADISALPEV-VPKTLALEVREGVGGQVFSSVDNYVTEIGLGFAQQWTIQGSDLHPFHIHVNHMQLGPTIGPANNWPDVPGWFQPGDYIDTIS 705          
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835YXW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW7_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.380e-36
Identity = 63/148 (42.57%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    1 RCPTAGVTYNVQYQHLGDA--AAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438
            RC  AG  + ++Y  + +A  A PEV   IAT+ V+PS RP A DLP W PCRPAYL D+T L    +G  + +++R  +N  +F+GP++  H   L + + W V G+DLHP H H+NH  +G+V   NQW + P W   GD++D++S
Sbjct:  222 RCAGAGAKHEIRYAQVNNALRADPEV---IATLEVSPSTRPPAADLPQWSPCRPAYLQDLTGLTPQQLGNAYPIELRQTINNAQFSGPEDYMHELELAVPEQWLVTGTDLHPLHVHVNHFQIGKVTAANQWAEAPEWLQEGDYMDSLS 366          
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835Z8B6_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B6_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.720e-36
Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    1 RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438
            RC  AGV + ++Y  + ++  P+   VI T+TV P  RP A DLP+W PCRPAYL D+T L    +GA + L++R  +N  +F GP    H  TLG+ + W V G+D HP H HI     G V   NQW+  P W V GDW+D++S
Sbjct:  307 RCADAGVEHEIRYTQVNNSLRPDAE-VIGTVTVTPDARPPAPDLPEWGPCRPAYLKDLTVLTPEQLGAAYPLELRQTINGAQFEGPDVIMHELTLGVPEQWLVTGTDQHPLHVHI-----GGVSAENQWDDAPDWLVVGDWMDSLS 446          
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835Z7H4_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.300e-25
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   25 YNVQYQHLGDAAAPE-----VVPVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMG--ADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438
            ++++Y+H+  + A E     ++  IA I V  S RP A +LP W+PCRPAYL  +   P  +    A   +   DG+             P TLG    W V  S LHP H H+NHM LG +   NQW+ +PGW+VAGDWIDT++
Sbjct:  306 HHIRYRHIKHSGAAELPDTDIITTIANIVVYSSARPVAPNLPVWQPCRPAYLTKLAA-PSGNPRPVAAIAVAALDGI-------------PLTLGSTVQWDVSFSFLHPLHTHVNHMQLGPITAANQWSSLPGWHVAGDWIDTLA 436          
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835YUJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 9.850e-19
Identity = 59/160 (36.88%), Postives = 80/160 (50.00%), Query Frame = 1
Query:    1 RCPTAGVTYNVQYQHLGDAAAPEVV------PVIATITVNPSVRPAADDLPDWKPCRPAYLVDITTLPKADMGADFLLDVRDGLNTEK-----FTGPKENFHPFTLGIAQP--WTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPG-WNVAGDWIDTIS 438
            RCP AG+   VQ +    +  P  +      P IATITV  +    A  LP  KPCRP YL+DI      +   D  + V DG +        +TG  +     T+ + QP  W + GS  HPFH H+NHMML    D   W+Q+   W++ GDW+D+IS
Sbjct:  602 RCPAAGMHKIVQQRINDPSCLPGCLKDTYQHPTIATITVGAAAGAPAPALPKLKPCRPGYLMDIVPTAATEQ-VDLTIRV-DGFSVNNLPGALYTGVADAAPMTTMTLGQPYQWVIDGSANHPFHAHVNHMMLSV--DIQPWDQVQANWHMPGDWLDSIS 757          
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Match: A0A835Z1F3_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.510e-15
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1
Query:  280 TLGIAQPWTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS 438
            TLG    W V  S LHP H H+NHM LG V   NQW+ +PGW+VAGDWIDT++
Sbjct:    2 TLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLA 54          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133309 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835Z252_9STRA2.130e-110100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CK08_9STRA2.090e-4250.34Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZCB5_9STRA2.950e-4048.98CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZH56_9STRA7.370e-4050.68CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YXW7_9STRA3.380e-3642.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8B6_9STRA4.720e-3643.84Plastocyanin-like domain-containing protein n=1 Ta... [more]
A0A835Z7H4_9STRA1.300e-2539.31Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
A0A835YUJ5_9STRA9.850e-1936.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1F3_9STRA1.510e-1558.49Plastocyanin-like domain-containing protein (Fragm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_272contigContig_272:19254..20989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133309|gw1.272.2.1
DescriptionMulticopper oxidase
COG categoryQ
Max annot lvl33208|Metazoa
EggNOG OGsCOG2132@1|root,2RBNT@2759|Eukaryota,3A392@33154|Opisthokonta,3BRFG@33208|Metazoa,3D96E@33213|Bilateria
Evalue1.13e-06
Seed ortholog10224.XP_002738121.1
Hectar predicted targeting categoryother localisation
TranscriptId133631
TrackFilteredModels1
ProteinId133309
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133309gene_18486Tribonema minus UTEX_B_3156 geneContig_272 19254..20989 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18486_1exon_18486_1Tribonema minus UTEX_B_3156 exonContig_272 19254..19405 +
exon_18486_2exon_18486_2Tribonema minus UTEX_B_3156 exonContig_272 19917..20179 +
exon_18486_3exon_18486_3Tribonema minus UTEX_B_3156 exonContig_272 20967..20989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18486CDS_18486Tribonema minus UTEX_B_3156 CDSContig_272 19254..19405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133309Trimin1|133309|gw1.272.2.1Tribonema minus UTEX_B_3156 polypeptideContig_272 19254..20989 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18486 ID=mRNA_18486|Name=jgi.p|Trimin1|133309|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_272:19254..20989+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGATGCCCTACAGCAGGTGTGACCTACAACGTGCAGTACCAGCACCTTGG
TGATGCTGCTGCGCCTGAAGTCGTCCCCGTCATTGCTACCATCACCGTCA
ACCCCAGCGTGCGCCCCGCTGCTGATGACCTCCCCGACTGGAAGCCGTGC
AGGCCCGCCTACCTGGTGGACATCACAACACTCCCCAAAGCAGACATGGG
CGCAGATTTCCTCTTAGATGTCCGCGATGGCCTCAACACGGAGAAGTTCA
CCGGACCGAAAGAGAACTTCCATCCGTTCACTCTGGGCATTGCACAGCCT
TGGACTGTGCTCGGCAGCGACCTTCATCCTTTCCACCAGCACATCAACCA
CATGATGCTGGGTGAAGTTGGCGATGGCAACCAGTGGAATCAGATCCCCG
GCTGGAATGTGGCAGGCGACTGGATCGACACCATCTCC
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protein sequence of jgi.p|Trimin1|133309

>Trimin1|133309|gw1.272.2.1 ID=Trimin1|133309|gw1.272.2.1|Name=jgi.p|Trimin1|133309|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp
RCPTAGVTYNVQYQHLGDAAAPEVVPVIATITVNPSVRPAADDLPDWKPC
RPAYLVDITTLPKADMGADFLLDVRDGLNTEKFTGPKENFHPFTLGIAQP
WTVLGSDLHPFHQHINHMMLGEVGDGNQWNQIPGWNVAGDWIDTIS
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mRNA from alignment at Contig_272:19254..20989+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18486 ID=mRNA_18486|Name=jgi.p|Trimin1|133309|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1736bp|location=Sequence derived from alignment at Contig_272:19254..20989+ (Tribonema minus UTEX_B_3156 )
AGATGCCCTACAGCAGGTGTGACCTACAACGTGCAGTACCAGCACCTTGG TGATGCTGCTGCGCCTGAAGTCGTCCCCGTCATTGCTACCATCACCGTCA ACCCCAGCGTGCGCCCCGCTGCTGATGACCTCCCCGACTGGAAGCCGTGC AGGTTGGTGCCATACTTGTTTTTTGTGTGCATGCTGCACGTGTGTACAAG AGCACCACATATGGCAGCTAGCTGGATTGCCACACTCCCCACAATGTGAC AAGTAATGTGATGTGATGGGCCTACACATGCAAACTGTTTCTGATTTTGA CAAAATCAAGCCTGCATGGAGCACGTTTACAGCAGCTTACACTTCTCGTG CTTGGCATACGCACCCTTGCTGCTGCTGCTGCGCTTCAGTGTTTGGTAAA AAGCGCACGCTCAGTCAAGATGCTCTGCGCCGTGTAGGTTGAGTGAACCA GGTGAAATGCATTGTGTGGTGTATCGCGTGTTAAGCTGCTCATTCGCATT GTGTTGGTCGCTCATCGCCTTGATGCCGTGACTTGACTTGGATCACATTA GCACAGCATGGCAGGCTCTAACCCCAACCCTCACTCTCATCCCAACCTCA GTTATCAATCACAGAGTGCCTTGTCTTACTTCAACATGCAACTTCAACAC ACACTCCGCGCAGGCCCGCCTACCTGGTGGACATCACAACACTCCCCAAA GCAGACATGGGCGCAGATTTCCTCTTAGATGTCCGCGATGGCCTCAACAC GGAGAAGTTCACCGGACCGAAAGAGAACTTCCATCCGTTCACTCTGGGCA TTGCACAGCCTTGGACTGTGCTCGGCAGCGACCTTCATCCTTTCCACCAG CACATCAACCACATGATGCTGGGTGAAGTTGGCGATGGCAACCAGTGGAA TCAGATCCCCGGCTGGAATGTGGCAGGTTAGTTTCAAATGCGCATGTGGT GGGTGTTTACGCGTACACGGCCAAGGAGACTGGTTGGGGCCACATTTTGT GACCGAGTACCTTGATGTCAGGATTAGTAACATTGCAGAGAGAGAGACAC ATGTGTGCTGCGGACAACCGTGCTTGTGTGCCCTCGAGTGTCTCTGGCAA GACGGCGCATGCGGCACATATGAAGCGCTGGCCTGCTTTACTTGAATGGG ATGCATCAACAACAGTTGTGTTGCTTACTACTTGACTTTGCAAGCACTCC ATAGTAGAAGTGATGTACTGCAGCACTGGATTCCCTTCTCATGTTGCGGC TGCTTTCTGCTGACGTATTGAGATCACGCAGAGCTATTGAGCAGCTGCTT ACTCAAGTTTAAGTCAATACGGTTGTCATGCGGATACTCTACAGAGCAGC GCTCACTACATTGCGTACATTGCACACTTTTTTGCAGGTTCAAGCACTCT TCATCACTATCTGAGTTGTTGTCAAAATCATGTGTTTTCAATGGAGATAC CTCATCAAGCTACACATTGCACAATGCGCACTGAGTTGCGACGTCAGCGC GAGTAAACATATAGACTACATACCTCTGTCGTTTGTTAAACGCCTGCACG TCTCTCTCTGGCATCTATGCTATAGCCGCGCGGTCATTGTGATGCTTCAT GAACATCCACGTGCGGCTGCACCCCGCGAAAAATCCACAAGTCCCCAACG GACCGACTCGTCACCACGCTCCAGATCATAACAACTGCGTGTGCGCTTGT CACGCACTCACAGGCGACTGGATCGACACCATCTCC
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Coding sequence (CDS) from alignment at Contig_272:19254..20989+

>mRNA_18486 ID=mRNA_18486|Name=jgi.p|Trimin1|133309|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_272:19254..20989+ (Tribonema minus UTEX_B_3156 )
AGATGCCCTACAGCAGGTGTGACCTACAACGTGCAGTACCAGCACCTTGG
TGATGCTGCTGCGCCTGAAGTCGTCCCCGTCATTGCTACCATCACCGTCA
ACCCCAGCGTGCGCCCCGCTGCTGATGACCTCCCCGACTGGAAGCCGTGC
AGGCCCGCCTACCTGGTGGACATCACAACACTCCCCAAAGCAGACATGGG
CGCAGATTTCCTCTTAGATGTCCGCGATGGCCTCAACACGGAGAAGTTCA
CCGGACCGAAAGAGAACTTCCATCCGTTCACTCTGGGCATTGCACAGCCT
TGGACTGTGCTCGGCAGCGACCTTCATCCTTTCCACCAGCACATCAACCA
CATGATGCTGGGTGAAGTTGGCGATGGCAACCAGTGGAATCAGATCCCCG
GCTGGAATGTGGCAGGCGACTGGATCGACACCATCTCC
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