mRNA_18485 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132651
Unique NamemRNA_18485
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Match: A0A835Z5M5_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M5_9STRA)

HSP 1 Score: 275 bits (702), Expect = 1.020e-93
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL
Sbjct:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 129          
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Match: A0A835YGN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN2_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.170e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAW 267
            MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAW
Sbjct:   93 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAW 181          
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Match: A0A835YUJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ5_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.830e-49
Identity = 81/125 (64.80%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGN--GAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTP 369
            M+PGPVIRM+ACNTYKL + ND A WPAG N +  G +NG   PT+TN+H HGLHISG AP D + T+++AG+   YTYT+PC+H S T WYHPH HGS ALQADGGAAGML++EGAPRE A  P
Sbjct:  336 MVPGPVIRMQACNTYKLRLVNDQAGWPAGLNADQIGGVNGFHDPTVTNLHLHGLHISGMAPGDSMDTLLEAGEMNVYTYTIPCEHASGTFWYHPHGHGSTALQADGGAAGMLIVEGAPRESAKFP 460          
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.490e-47
Identity = 77/129 (59.69%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            +IPGP+IRMKAC  Y LTV NDL AWP G    G +NG  GPT+TN+HTHGLHISGE+P+D+ F  I  G  + Y Y +PCDH+    WYHPHKHG+VALQ  GGAAG+++IE   RE + TPA IQT+
Sbjct:  427 LIPGPIIRMKACQVYYLTVRNDLGAWPEGKPETGVMNGFHGPTVTNIHTHGLHISGESPADNPFVSILPGQEYTYQYRIPCDHIGGLHWYHPHKHGAVALQTHGGAAGLIVIEPMAREASVTPAAIQTM 555          
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Match: A0A835Z7H4_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.740e-47
Identity = 80/130 (61.54%), Postives = 96/130 (73.85%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTV-IDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            M+PGP+IRMKAC  Y++TVHN LA +P G  G G+  G   PT TN+H HGLH+SG+APSDDV TV I  G +F YTY +PCDH   T WYHPHK GS ALQADGGAAGM++IEG+ RE A+TP    T+
Sbjct:   41 MVPGPLIRMKACRNYRITVHNMLAEYPVGKTGTGS--GQYDPTWTNLHLHGLHVSGDAPSDDVLTVNIQPGLSFTYTYRIPCDHAGGTNWYHPHKRGSTALQADGGAAGMVIIEGSVREAANTPVAYGTV 168          
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 166 bits (420), Expect = 4.040e-45
Identity = 81/132 (61.36%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGA---INGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            MIPGP++RM+ C TY LTV N L  WPA      A   +N +  P +TN+H HGLH+SGEAP DDVF VI+ GDA  YTYT+PCDH S T WYHPH HGSVALQ  GGAAGML+IE + RE   TPAEI  L
Sbjct:  567 MIPGPLMRMQPCGTYHLTVKNALKGWPAPPPRIAAAAQLNSVHDPLVTNVHVHGLHVSGEAPGDDVFGVIEPGDAAMYTYTIPCDHASGTNWYHPHHHGSVALQTGGGAAGMLVIEPSAREALGTPAEIAAL 698          
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Match: A0A836C7C1_9STRA (Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.380e-44
Identity = 84/136 (61.76%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAG------NNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVF-TVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            MIPGP+IRMKACNTYKLTV N L  WP G       NGNGA      PT+TN+H HGLH+S  AP DDV  T I  G    YTY +PCDHVS T WYHPH+HGS ALQAD GAAGML+IEG  RE  DT A  + L
Sbjct:  102 MIPGPLIRMKACNTYKLTVVNKLGNWPEGVLDPPYPNGNGANR----PTVTNLHVHGLHVSSAAPGDDVVDTKIAPGHELTYTYKIPCDHVSGTYWYHPHRHGSTALQADSGAAGMLIIEGGGREAYDTAAPYKDL 233          
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA)

HSP 1 Score: 159 bits (403), Expect = 7.630e-43
Identity = 71/127 (55.91%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    7 PGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            PGP++RM+AC  Y LT+ N L  WP G      +NG   PT+TN+H HG+HISG AP DDVF  I AG+  EY YT+PCDH   T WYHPH HG VALQ+  GA GML++E  PRE  D P EIQ +
Sbjct:  306 PGPIMRMQACGVYHLTLKNTLEGWPEGIGPEAGVNGEHDPTVTNIHLHGMHISGMAPGDDVFAAIAAGEEQEYVYTVPCDHTGGTNWYHPHHHGIVALQSGTGAMGMLIVESNPREAQDMPPEIQMM 432          
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Match: A0A835ZAX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX7_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.670e-41
Identity = 76/132 (57.58%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    1 MIPGPVIRMKA---CNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            M+PGP++RMKA   C  Y L V NDLA WPA   G   IN +  PT+TN+H HGLH+SG AP DDV  +I+ G   +YTYTLPCDH S T WYHPH HGS ALQ  GGA G+L+IE + RE AD PA    L
Sbjct:  292 MLPGPIMRMKASGTCGKYTLNVINDLARWPAPEGG--MINTLHDPTVTNLHLHGLHVSGMAPGDDVSIMIEPGQTNKYTYTLPCDHSSGTNWYHPHNHGSSALQTTGGAYGLLVIESSARELADMPAAYAAL 421          
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.940e-37
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTHGLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVALQADGGAAGMLLIEGAPREYADTPAEIQTL 387
            MIPGP++RM+ C  Y + V ND A +P     + A+N M  PT TN+H HGLH+SGE+P DD F  I+ G   +YT  +PCDH S + WYHPH HGSVA+Q +GGAAG+L++  +P E + TP +IQ L
Sbjct:  615 MIPGPLMRMEPCGVYHINVFNDQAEFPDTAR-DYALNTMGAPTHTNLHVHGLHVSGESPGDDSFVTIEPGATQQYTIAVPCDHSSGSNWYHPHHHGSVAIQTEGGAAGLLVVGPSPTEASGTPNDIQAL 742          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132651 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5M5_9STRA1.020e-93100.00Plastocyanin-like domain-containing protein (Fragm... [more]
A0A835YGN2_9STRA1.170e-60100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUJ5_9STRA1.830e-4964.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCB5_9STRA1.490e-4759.69CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z7H4_9STRA2.740e-4761.54Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
A0A836CK08_9STRA4.040e-4561.36Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C7C1_9STRA3.380e-4461.76Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835ZH56_9STRA7.630e-4355.91CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZAX7_9STRA1.670e-4157.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVH6_9STRA1.940e-3751.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_272contigContig_272:4612..5975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132651|gw1.272.1.1
DescriptionMulticopper oxidase
COG categoryQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2132@1|root,2RBNT@2759|Eukaryota
Evalue2.38e-27
Seed ortholog2903.EOD27587
Hectar predicted targeting categoryother localisation
TranscriptId132973
TrackFilteredModels1
ProteinId132651
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132651gene_18485Tribonema minus UTEX_B_3156 geneContig_272 4612..5975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18485_1exon_18485_1Tribonema minus UTEX_B_3156 exonContig_272 4612..4641 +
exon_18485_2exon_18485_2Tribonema minus UTEX_B_3156 exonContig_272 4965..5200 +
exon_18485_3exon_18485_3Tribonema minus UTEX_B_3156 exonContig_272 5855..5975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18485CDS_18485Tribonema minus UTEX_B_3156 CDSContig_272 4612..4641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132651Trimin1|132651|gw1.272.1.1Tribonema minus UTEX_B_3156 polypeptideContig_272 4612..5975 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18485 ID=mRNA_18485|Name=jgi.p|Trimin1|132651|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_272:4612..5975+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCTGGTCCCGTCATTCGCATGAAGGCCTGCAACACGTACAAGTT
GACAGTGCACAACGACCTTGCCGCGTGGCCGGCCGGCAACAACGGCAACG
GCGCCATCAATGGCATGATGGGACCCACAATGACCAACATGCACACGCAC
GGCCTGCACATCAGTGGCGAGGCGCCCAGTGACGACGTGTTTACGGTCAT
CGACGCGGGCGACGCGTTTGAGTACACGTACACGCTGCCCTGCGACCACG
TCAGCAGCACTGCATGGTACCACCCCCACAAGCACGGCAGCGTCGCGCTG
CAAGCTGATGGCGGTGCGGCAGGCATGCTGCTAATTGAGGGGGCCCCGCG
TGAGTACGCCGACACCCCCGCTGAAATCCAGACCCTG
back to top

protein sequence of jgi.p|Trimin1|132651

>Trimin1|132651|gw1.272.1.1 ID=Trimin1|132651|gw1.272.1.1|Name=jgi.p|Trimin1|132651|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
MIPGPVIRMKACNTYKLTVHNDLAAWPAGNNGNGAINGMMGPTMTNMHTH
GLHISGEAPSDDVFTVIDAGDAFEYTYTLPCDHVSSTAWYHPHKHGSVAL
QADGGAAGMLLIEGAPREYADTPAEIQTL
back to top

mRNA from alignment at Contig_272:4612..5975+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18485 ID=mRNA_18485|Name=jgi.p|Trimin1|132651|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1364bp|location=Sequence derived from alignment at Contig_272:4612..5975+ (Tribonema minus UTEX_B_3156 )
ATGATTCCTGGTCCCGTCATTCGCATGAAGGTGAGCTTCAGCTGATTAAA AGTGTGTGCATTGAGGTAATTCACTGCACGAATGCAAATTACCCCCCCCC GGCACTGCATGCAGAACCTCACATTATGCAGTCGAGATTATGCATGAAAT TGACCCCGATGGATCAACAGCAGGTAAGCTCTTTTTACTGGCGCAGCCCG TCCTTACGCTGCTTGTTGATGTTGCTCAGTGCGGTGGCTGAAGTGAGCCC CGCCGGCTCTCCCATCTAGGTATCACTGCGACTTACTCATGGTGTCACCA CTGCCTACATCTATGAACCTCCACCCCTTCTACCCTGTGCTGTGCACCGA CAGGCCTGCAACACGTACAAGTTGACAGTGCACAACGACCTTGCCGCGTG GCCGGCCGGCAACAACGGCAACGGCGCCATCAATGGCATGATGGGACCCA CAATGACCAACATGCACACGCACGGCCTGCACATCAGTGGCGAGGCGCCC AGTGACGACGTGTTTACGGTCATCGACGCGGGCGACGCGTTTGAGTACAC GTACACGCTGCCCTGCGACCACGTCAGCAGCACTGCATGGTGAGCACTCG CAACAATGGGCGTACGTTGAAACGTATCAGACGGGCGAGCGTTGGGTACA CACAGCCTGCCTGGCTCAACTTTAGGTGTTTCCATGTTCGCAGGAAGTGT GCAACATATCTGCAGAACCCCAAGTATGCTGCGCACACAACACCAACACC AGTTCAACATTGCTTGGTGCCACTTCAAACCATGACCTGCCTGTGCATAT GTTGATCGCACGCCAGTTGGGCCTCTCCATGTGCGCTGCACTAATGTCAT GTCTGGTGCCTGGCAGTAGCAGAGCACACGGCCATGGACTTTGCAGAAGT TATTCTGAACATATTATGTGTACATGAATGACACTAAGTACATGCGCCTC GTGGCCTCCGACGCTATGTCCAGTTCTGCTGCCAGCGCGCATTGCTCACA AAAACCAGTGCGCGGTACACTTGTTCTGCTTGTTGGTAGCATGAGGATTG CAGGTGGCAAACTTCAATTCACTTGCCGTCCGCTACGTATACCCACAGCA CGAAAGCAGACGAAGCACGGTTGAACTGCTGCCAGCAAAGCACCGCCGTG AGACGCAACAACAGCACTCTTACCCGCATCATCATGGATGCATCATGTCT CAGCACTCAACACGTGGCCCTTGCCCGCCCCTGTGCTGCTTAGGTACCAC CCCCACAAGCACGGCAGCGTCGCGCTGCAAGCTGATGGCGGTGCGGCAGG CATGCTGCTAATTGAGGGGGCCCCGCGTGAGTACGCCGACACCCCCGCTG AAATCCAGACCCTG
back to top

Coding sequence (CDS) from alignment at Contig_272:4612..5975+

>mRNA_18485 ID=mRNA_18485|Name=jgi.p|Trimin1|132651|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_272:4612..5975+ (Tribonema minus UTEX_B_3156 )
ATGATTCCTGGTCCCGTCATTCGCATGAAGGCCTGCAACACGTACAAGTT
GACAGTGCACAACGACCTTGCCGCGTGGCCGGCCGGCAACAACGGCAACG
GCGCCATCAATGGCATGATGGGACCCACAATGACCAACATGCACACGCAC
GGCCTGCACATCAGTGGCGAGGCGCCCAGTGACGACGTGTTTACGGTCAT
CGACGCGGGCGACGCGTTTGAGTACACGTACACGCTGCCCTGCGACCACG
TCAGCAGCACTGCATGGTACCACCCCCACAAGCACGGCAGCGTCGCGCTG
CAAGCTGATGGCGGTGCGGCAGGCATGCTGCTAATTGAGGGGGCCCCGCG
TGAGTACGCCGACACCCCCGCTGAAATCCAGACCCTG
back to top