mRNA_18396 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181239
Unique NamemRNA_18396
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|181239 vs. uniprot
Match: A0A835YZH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH3_9STRA)

HSP 1 Score: 263 bits (672), Expect = 3.470e-89
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 
Query:    1 TPQEDAIVRVLVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNHLMHLVITKPSYCWVQVRLLSLSPSALWLGALLPDSA 381
            TPQEDAIVRVLVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNHLMHLVITKPSYCWVQVRLLSLSPSALWLGALLPDSA
Sbjct:    1 TPQEDAIVRVLVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNHLMHLVITKPSYCWVQVRLLSLSPSALWLGALLPDSA 127
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BLAST of jgi.p|Trimin1|181239 vs. uniprot
Match: A0A835YTC6_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTC6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 9.150e-44
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:    7 QEDAIVRVLVARHGTRD--WALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNHLMHLVITKPSYCWVQVRL 327
            +ED IVR LVARHG+    W LM   GLPQRTAKQIRERW NHL P+I KD WT++ED+VLCAA+R FGGS+AEFARLLL GRPEN IKN L  L+ + P +CW++VR+
Sbjct:   65 EEDRIVRELVARHGSGGTCWMLMNKKGLPQRTAKQIRERWLNHLAPDINKDPWTQEEDLVLCAAHRHFGGSYAEFARLLLPGRPENNIKNRLNKLLASDPVHCWLEVRV 173
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BLAST of jgi.p|Trimin1|181239 vs. uniprot
Match: A0A835YSB9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB9_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.190e-39
Identity = 68/110 (61.82%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    7 QEDAIVRVLVARHGTRD--WALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNHL--MHLVITKPSYCWVQVR 324
            +ED IVR LVARHGT    W L+   GLPQRT KQIRERW NHL P+I KD WT++ED+VLCAA+R FGG +AEFARLLL GRPEN+IKNHL    ++ + P++  ++VR
Sbjct:    8 EEDRIVRQLVARHGTGSTCWMLLNKKGLPQRTPKQIRERWLNHLVPHINKDPWTQEEDMVLCAAHRHFGGIYAEFARLLLPGRPENSIKNHLNTSKMLASDPAHFGLEVR 117
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BLAST of jgi.p|Trimin1|181239 vs. uniprot
Match: S8DNZ6_9LAMI (Uncharacterized protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DNZ6_9LAMI)

HSP 1 Score: 103 bits (258), Expect = 2.200e-24
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    1 TPQEDAIVRVLVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNH 273
            TPQED ++  +V +HG R W+ +  V LP R  KQ RERW NHL PNIKKD W+++ED++L +A+RL G  +AE AR L  GR ENTIKNH
Sbjct:  118 TPQEDGLLVEMVEKHGVRKWSAIAQV-LPGRIGKQCRERWHNHLKPNIKKDRWSEEEDMILISAHRLLGNRWAEIARSL-PGRSENTIKNH 206
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BLAST of jgi.p|Trimin1|181239 vs. uniprot
Match: A0A2G9HWG5_9LAMI (Transcription factor, Myb superfamily n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HWG5_9LAMI)

HSP 1 Score: 99.0 bits (245), Expect = 4.760e-22
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 TPQEDAIVRVLVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNH 273
            TP+ED ++  LV +HG R W+ +  + LP R  KQ RERW NHL PNIKKD W+++ED +L  A+R  G  +AE AR L  GR ENTIKNH
Sbjct:  181 TPEEDGLLMKLVEKHGVRKWSTIAQM-LPGRIGKQCRERWHNHLKPNIKKDRWSEEEDRILIEAHRQLGNKWAEIARRL-PGRSENTIKNH 269
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BLAST of jgi.p|Trimin1|181239 vs. uniprot
Match: A0A5B6UYY7_9ROSI (Myb-like protein Q n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6UYY7_9ROSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.500e-21
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 TPQEDAIVRVLVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNH 273
            TPQED ++  LV RHGT+ W+ +  + L  R  KQ RERW NHL P+IKKD W+++ED+VL AA++  G  +AE A+ L  GR ENTIKNH
Sbjct:  210 TPQEDRVLMQLVTRHGTKKWSQIAKM-LNGRVGKQCRERWHNHLRPDIKKDSWSEEEDMVLIAAHKEIGNKWAEIAKRL-PGRTENTIKNH 298
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BLAST of jgi.p|Trimin1|181239 vs. uniprot
Match: A0A059PRW0_SALMI (MYB-related transcription factor n=1 Tax=Salvia miltiorrhiza TaxID=226208 RepID=A0A059PRW0_SALMI)

HSP 1 Score: 96.7 bits (239), Expect = 2.220e-21
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 TPQEDAIVRVLVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNH 273
            TP+ED ++  LV +HG R W+ +  + LP R  KQ RERW NHL PNIKKD W+++ED +L +A++  G  +AE AR L  GR ENTIKNH
Sbjct:  167 TPEEDGLLVELVEKHGVRKWSSIAQM-LPGRIGKQCRERWHNHLKPNIKKDRWSEEEDRILISAHQKLGNRWAEIARSL-PGRSENTIKNH 255
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BLAST of jgi.p|Trimin1|181239 vs. uniprot
Match: A0A078K1D9_BRANA ((rape) hypothetical protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078K1D9_BRANA)

HSP 1 Score: 91.7 bits (226), Expect = 2.420e-21
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:   31 LVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNH 273
            LV  HGT+ W+ +  + LP R  KQ RERW NHL P+IKKDGW+++ED++L AA++  G  +AE AR L  GR ENTIKNH
Sbjct:   19 LVEHHGTKKWSHIAKM-LPGRVGKQCRERWHNHLRPDIKKDGWSEEEDMILIAAHKEIGNKWAEIARKL-PGRTENTIKNH 97
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BLAST of jgi.p|Trimin1|181239 vs. uniprot
Match: A0A1U8LH93_GOSHI (myb-like protein AA n=19 Tax=Gossypium TaxID=3633 RepID=A0A1U8LH93_GOSHI)

HSP 1 Score: 97.8 bits (242), Expect = 2.880e-21
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 TPQEDAIVRVLVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNH 273
            TPQED ++  LV RHGT+ W+ +  + L  R  KQ RERW NHL P+IKKD W+++ED++L AA++  G  +AE A+ L  GR ENTIKNH
Sbjct:  258 TPQEDRVLMQLVTRHGTKKWSEIAKM-LNGRVGKQCRERWHNHLRPDIKKDSWSEEEDMILIAAHKEIGNKWAEIAKRL-PGRTENTIKNH 346
[Close]
BLAST of jgi.p|Trimin1|181239 vs. uniprot
Match: A0A022RXP1_ERYGU (Uncharacterized protein (Fragment) n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RXP1_ERYGU)

HSP 1 Score: 97.1 bits (240), Expect = 3.300e-21
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 TPQEDAIVRVLVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKKDGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNH 273
            +P+ED ++  LV +HG R W+ +  + LP R  KQ RERW NHL PNIKKD W+++ED +L  A+R  G  +AE AR L  GR ENTIKNH
Sbjct:  228 SPEEDGLLVELVEKHGVRKWSTIAQM-LPGRIGKQCRERWHNHLKPNIKKDRWSEEEDSILIEAHRQLGNKWAEIARSL-PGRSENTIKNH 316
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181239 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZH3_9STRA3.470e-89100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTC6_9STRA9.150e-4466.06Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A835YSB9_9STRA7.190e-3961.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
S8DNZ6_9LAMI2.200e-2456.04Uncharacterized protein n=1 Tax=Genlisea aurea Tax... [more]
A0A2G9HWG5_9LAMI4.760e-2253.85Transcription factor, Myb superfamily n=1 Tax=Hand... [more]
A0A5B6UYY7_9ROSI1.500e-2153.85Myb-like protein Q n=1 Tax=Gossypium australe TaxI... [more]
A0A059PRW0_SALMI2.220e-2152.75MYB-related transcription factor n=1 Tax=Salvia mi... [more]
A0A078K1D9_BRANA2.420e-2155.56(rape) hypothetical protein (Fragment) n=1 Tax=Bra... [more]
A0A1U8LH93_GOSHI2.880e-2152.75myb-like protein AA n=19 Tax=Gossypium TaxID=3633 ... [more]
A0A022RXP1_ERYGU3.300e-2152.75Uncharacterized protein (Fragment) n=2 Tax=Erythra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_247contigContig_247:38883..39889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181239|e_gw1.247.21.1
BRITEko00000,ko03000
KEGG koko:K09422
GOsGO:0000003,GO:0000981,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001134,GO:0001135,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006935,GO:0007275,GO:0008150,GO:0009553,GO:0009605,GO:0009856,GO:0009889,GO:0010183,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0040011,GO:0042221,GO:0042330,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0044706,GO:0045595,GO:0045691,GO:0045697,GO:0048229,GO:0048856,GO:0048868,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050918,GO:0051171,GO:0051239,GO:0051252,GO:0051704,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000026,GO:2000112,GO:2001141
DescriptionMyb-like DNA-binding domain
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,37J6R@33090|Viridiplantae,3GC5E@35493|Streptophyta
Evalue3.49e-22
Seed ortholog29730.Gorai.001G263600.1
Hectar predicted targeting categoryother localisation
TranscriptId181561
TrackFilteredModels1
ProteinId181239
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181239gene_18396Tribonema minus UTEX_B_3156 geneContig_247 38883..39889 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18396_1exon_18396_1Tribonema minus UTEX_B_3156 exonContig_247 38883..39032 +
exon_18396_2exon_18396_2Tribonema minus UTEX_B_3156 exonContig_247 39656..39889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18396CDS_18396Tribonema minus UTEX_B_3156 CDSContig_247 38883..39032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181239Trimin1|181239|e_gw1.247.21.1Tribonema minus UTEX_B_3156 polypeptideContig_247 38883..39889 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18396 ID=mRNA_18396|Name=jgi.p|Trimin1|181239|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_247:38883..39889+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACTCCTCAGGAAGATGCCATCGTGAGAGTGCTAGTGGCACGCCATGGCAC
CAGGGACTGGGCCCTCATGCGCGATGTAGGCCTACCACAGAGGACAGCCA
AGCAGATCAGGGAGAGGTGGACCAACCACCTCACTCCGAACATCAAGAAG
GATGGCTGGACCAAGCAAGAGGACATTGTGCTGTGCGCTGCCTACAGACT
CTTTGGAGGCAGCTTTGCAGAATTTGCCAGGCTGCTCCTGGCTGGGAGGC
CTGAGAACACCATCAAGAACCACCTCATGCATCTTGTGATTACAAAGCCA
TCGTACTGCTGGGTGCAGGTGAGGCTATTGAGCTTGTCTCCCAGTGCACT
CTGGCTGGGTGCTTTGTTGCCCGATTCAGCGTGA
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protein sequence of jgi.p|Trimin1|181239

>Trimin1|181239|e_gw1.247.21.1 ID=Trimin1|181239|e_gw1.247.21.1|Name=jgi.p|Trimin1|181239|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
TPQEDAIVRVLVARHGTRDWALMRDVGLPQRTAKQIRERWTNHLTPNIKK
DGWTKQEDIVLCAAYRLFGGSFAEFARLLLAGRPENTIKNHLMHLVITKP
SYCWVQVRLLSLSPSALWLGALLPDSA*
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mRNA from alignment at Contig_247:38883..39889+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18396 ID=mRNA_18396|Name=jgi.p|Trimin1|181239|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1007bp|location=Sequence derived from alignment at Contig_247:38883..39889+ (Tribonema minus UTEX_B_3156 )
ACTCCTCAGGAAGATGCCATCGTGAGAGTGCTAGTGGCACGCCATGGCAC
CAGGGACTGGGCCCTCATGCGCGATGTAGGCCTACCACAGAGGACAGCCA
AGCAGATCAGGGAGAGGTGGACCAACCACCTCACTCCGAACATCAAGAAG
GTGACCAATTTCAACAAATCGAACAAGGTTTAAGTTCAAGCAGTTGTTTG
CTGCCTCATCCTTGGACTATTCACCTGCCATGATATGGTTATGTTTTTGG
CGACTTATCTTGGTTTGCTGCAATAAGCTGCAGACGAACCAGAGGCAGTG
CCTCATCCTGGTCACATGCCACCGTGTGCACCTAATGTCAACAAGGTTTA
TGTGCTTGTGGTGCTGTTGCCGTGTCATGAAATCCTGTTGCTATTGCTGC
ACACAAGACACTCTATGCCATATAGAGCATGCAGGGCATTCAGGTACCCC
ATCTATGTCACTATGCAGGCCGGTCTCAAGAATCTGCAACTCGAACCTCA
AAATAATTTCATTTTCTTCATGTCATTTGGCTATAGTGCTCAGACCCTGG
GACATGGCAGATGGTTGTATACACTGTACCTCAATAATGTCCACCATGAT
TCGACACGACACTCACGTAACCTAGAACATCAGGCAATGTGCGCTGGCAC
CATGCTCTGCTTCGAACCAGCATGAGCACATGGCGCTCTGCACAATGCCC
GCTATTGTGATACACAGACTCTGACAGAGAGAAGCACCAAAATTCACTGT
CTTACTTGTGCATGGTTGTACAGGATGGCTGGACCAAGCAAGAGGACATT
GTGCTGTGCGCTGCCTACAGACTCTTTGGAGGCAGCTTTGCAGAATTTGC
CAGGCTGCTCCTGGCTGGGAGGCCTGAGAACACCATCAAGAACCACCTCA
TGCATCTTGTGATTACAAAGCCATCGTACTGCTGGGTGCAGGTGAGGCTA
TTGAGCTTGTCTCCCAGTGCACTCTGGCTGGGTGCTTTGTTGCCCGATTC
AGCGTGA
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Coding sequence (CDS) from alignment at Contig_247:38883..39889+

>mRNA_18396 ID=mRNA_18396|Name=jgi.p|Trimin1|181239|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_247:38883..39889+ (Tribonema minus UTEX_B_3156 )
ACTCCTCAGGAAGATGCCATCGTGAGAGTGCTAGTGGCACGCCATGGCAC
CAGGGACTGGGCCCTCATGCGCGATGTAGGCCTACCACAGAGGACAGCCA
AGCAGATCAGGGAGAGGTGGACCAACCACCTCACTCCGAACATCAAGAAG
GATGGCTGGACCAAGCAAGAGGACATTGTGCTGTGCGCTGCCTACAGACT
CTTTGGAGGCAGCTTTGCAGAATTTGCCAGGCTGCTCCTGGCTGGGAGGC
CTGAGAACACCATCAAGAACCACCTCATGCATCTTGTGATTACAAAGCCA
TCGTACTGCTGGGTGCAGGTGAGGCTATTGAGCTTGTCTCCCAGTGCACT
CTGGCTGGGTGCTTTGTTGCCCGATTCAGCGTGA
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