mRNA_18313 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Match: A0A836CHW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW1_9STRA) HSP 1 Score: 397 bits (1021), Expect = 2.230e-140 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 Query: 1 DCVFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNLGGLKVPANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVASPLGSLGFAFAVLKNAGIRPPGGPLLKLSRRFGDSRKNYTKSVSHVDDLPDKWKPYGRKYGPRSRDAWDNYENYADEWLTP 567 DCVFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNLGGLKVPANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVASPLGSLGFAFAVLKNAGIRPPGGPLLKLSRRFGDSRKNYTKSVSHVDDLPDKWKPYGRKYGPRSRDAWDNYENYADEWLTP Sbjct: 1 DCVFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNLGGLKVPANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVASPLGSLGFAFAVLKNAGIRPPGGPLLKLSRRFGDSRKNYTKSVSHVDDLPDKWKPYGRKYGPRSRDAWDNYENYADEWLTP 189
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Match: A0A8J2WDX5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WDX5_9STRA) HSP 1 Score: 160 bits (406), Expect = 2.270e-45 Identity = 83/178 (46.63%), Postives = 106/178 (59.55%), Query Frame = 1 Query: 1 DCVFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNLG-GLKVPANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVASPLGSLGFAFAVLKNAGIRPPGGPLLKLSRRFGDSRKNYTKSVSHVDDLPDKWKPYGRKYGPRSRDAWD 531 D V+ GPIVGPLNK D+ T MF++Y FPDL+M +EFT DP+E RYW I+R++GT T G G NK+ VGPQ SVTF+ V +TGGYVVD G LG FA+ K G P + K+ G KN+ K+ SH DDLP KW+ GR++G R+ +AWD Sbjct: 129 DFVWFGPIVGPLNKQDFLRTVDMFKVYEGFPDLKMHLAEFTRDPVEENRYWSILRLEGTNTEPQASGTGFSYKPTNNKLDVGPQCISVTFDADGRVSRYTGGYVVDRTQGKTGMLGAMFAITKTVGGFVPSLRVAKILNAIGARLKNFPKARSHRDDLPAKWRSLGRRFGKRTAEAWD 306
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Match: A0A7S3FN30_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FN30_9EUKA) HSP 1 Score: 126 bits (317), Expect = 3.210e-34 Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 1 Query: 1 DCVFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNLGGLKVPANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVASPLGSLGFAFA 357 D VF GP+VGPLN +DY T +F++Y AFPD+++ + FT DP E R+W I+RV GT TG L++G KVP +G +M VGPQ+ SVTFN+ +V+ TGGY+ D G G FA Sbjct: 4 DFVFMGPVVGPLNAIDYLGTLGVFKVYDAFPDVQVNMAPFTQDPHEHKRFWSIIRVTGTHTGELDVGDAKVPPSGKRMRVGPQAVSVTFNDADKVVRMTGGYIADVRDGETGDAGAMFA 122
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Match: A0A0G4FTC6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FTC6_9ALVE) HSP 1 Score: 97.1 bits (240), Expect = 5.730e-20 Identity = 53/121 (43.80%), Postives = 64/121 (52.89%), Query Frame = 1 Query: 1 DCVFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNLGGLKVPANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVASPLGSLGFAFAVL 363 D F P+VGPL K Y F +Y AFPDL ++ F VDP+EP R W + R T G GG G ++ PQ S+TFNE EVI+FTGGYV D A G LG F +L Sbjct: 103 DFTFVFPVVGPLTKDQYLKAVKSFDLYGAFPDLNPQYFNFAVDPLEPSRVWYLSRAVATHKGK---GGFGFEPTGTEIESPPQILSLTFNENGEVIKFTGGYVADRTAGNTGGLGGVFGLL 220
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Match: A0A250X4G9_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4G9_9CHLO) HSP 1 Score: 91.7 bits (226), Expect = 3.500e-19 Identity = 61/173 (35.26%), Postives = 89/173 (51.45%), Query Frame = 1 Query: 1 DCVFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNL--GGLKVPANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVA--SPLGSLGFAFAVLKNAGIRPPGGPLLKLSRRFGDSRKNY-----TKSVSHVDDLPDKWKPY 492 D VF+GP++GPLNK DY + F++Y AFPDL F +DP+EP R +R GT G LNL G K VGP++ S+ NE+ V GY VD A + G AF +L++ GI P GP + ++ + K + +SVS +++P +K + Sbjct: 73 DFVFRGPVIGPLNKRDYLISLDSFQMYNAFPDLNSNAFGFCLDPLEPGRIRFFVRQTGTHKGPLNLVDGFGSYEPTFRKANVGPEAYSMMLNEEGRVKLLNVGYPVDFDAPNTTANKYGAAFGLLQSVGISLPTGPAFGVVQKLTNGLKEFGIGSSARSVSKWEEIPQWYKEF 245
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Match: A0A6U3SEY5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SEY5_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.170e-18 Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 1 Query: 7 VFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNL-GGLKVPANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVASPLGSLGFAFAVLKNAGIR-PPGGPLLKLSRRFGDSRKNYTKSVSHVDDLPDKW 483 VF+GPI+GPLNK DY T F++Y A PD+ F++DP + R W ++R GT TG L L ANG + P++ S+TF++ +++ T GYV D + G A + G+ P GPLL+ ++ FG + D+P+ W Sbjct: 98 VFRGPIIGPLNKKDYLKTMDAFQVYNAIPDINPNAWGFSIDPQDDNRVWFMVRNSGTFTGRAFLPDSLNYEANGAMIDGCPETFSITFDDDQKMKCLTVGYVADRFSGNTKGQGAAAGIFNAIGLPFPKVGPLLRFAQWFGTEVVDVGLPSYSAKDVPEWW 258
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Match: A0A7S3L5Z9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5Z9_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.090e-15 Identity = 57/174 (32.76%), Postives = 83/174 (47.70%), Query Frame = 1 Query: 1 DCVFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNLGG-LKVPANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVASPLGSLGFAFAVLKNAGI---RPPGGPLLKLSRRFGDSRKNYTKSVSHVDDLPDKWKPYGRKYGP 510 D +F+GPIVGP+N+ D T ++F + ++FPDL+ + F VDP P R R GT TG L+L G LK P GNK V S+T+ + ++I VD F +L+ A I G P+L+ ++ + + S DD+P WK R P Sbjct: 84 DYIFRGPIVGPINREDLVRTNSLFGLDKSFPDLKRQPFGFAVDPENPFRVVFFERWVGTHTGELDLLGILKAPPTGNKSVSPLFPFSITWTPEGKIIYEALTTAVDRFEGNARGKVAVFGLLETACISLENSVGNPILRFQQKLNCFLNSSAQIYSRDDDIPSWWKSKARGADP 257
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Match: A0A7S3Z7T1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z7T1_9EUKA) HSP 1 Score: 82.8 bits (203), Expect = 1.180e-15 Identity = 53/153 (34.64%), Postives = 73/153 (47.71%), Query Frame = 1 Query: 7 VFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNLGGLKVP--ANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVASPLGSLGFAFAVLKNAGIRPPGGPLLKLSRRFGDSRK--NYTKSV 453 VF+GP++GPLNK DY NT + Y+AFPD+ +TVDP P + W +R GT T L P A K+ + +S SVT + + +V T GYV D G A +L G GPL ++ G R+ NY + Sbjct: 115 VFRGPVIGPLNKKDYINTLSALAPYKAFPDINPNAFGWTVDPQNPFKVWFFVRTTGTHTEPWRLVSFAPPFEATNKKVALATESYSVTLSPEGKVKLLTVGYVADRFEGNANGYGAALGLLAGIGY----GPLALVADAAGAVREANNYANDI 263
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Match: A0A1E7EXE0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXE0_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.590e-13 Identity = 53/148 (35.81%), Postives = 74/148 (50.00%), Query Frame = 1 Query: 1 DCVFKGPIVGPLNKVDYCNT-QAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQT----GALNLGG---------LKVPANGNKMVVGPQSCSVTFN--EKKEVIEFTGGYVVDSVASPLGSL---GFAFAVLKNAGIRPP 387 D VFKGP++GPLNK DY + FRIY AFPDL FTVD ++P+ ++ GT GA+ LGG + +G + + +S S+TFN E+ +V GGYVV A + + F +L+ GI P Sbjct: 4 DFVFKGPLIGPLNKPDYFDVVDNYFRIYEAFPDLNPNCYGFTVDVVDPLTVRFFVKATGTYQQPLEGAIGLGGGLLGKAATFMTGKPDGRRYIGATESWSITFNSLERMQVRCLRGGYVVGEAAGGMTTAQGKDSIFGILQTLGIPVP 151
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Match: K0TA52_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TA52_THAOC) HSP 1 Score: 75.9 bits (185), Expect = 3.170e-13 Identity = 52/172 (30.23%), Postives = 80/172 (46.51%), Query Frame = 1 Query: 7 VFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYWGIMRVQGTQTGALNLGGL-KVPANGNKMVVGPQSCSVTFNEKKEVIEFTGGYVVDSVASPLGSLGFAFAVLKNAGI---RPPGGPLLKLSRRFGDSRKNYTKSVSHVDDLPDKWKPYGRKYGP 510 +F+GPIVGP+N+ D T ++F + ++FPDL+ E +DP P R R + T TG NL GL K A K + S+T+ + ++I VD F +L+ AGI G P L++ ++ G ++ S +D+P WK R P Sbjct: 92 LFRGPIVGPINRKDLVETNSIFGLDKSFPDLKRETFGLCIDPDNPYRVLFFERWKATHTGEFNLMGLLKTDATQQKSISPAFPFSITWTPEGKIIYECLTTAVDRFEGTTKGKVAVFGLLETAGIPLENGVGNPFLRIGQKIGRFVNLPAQTYSREEDIPSWWKSSARAADP 263 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181384 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18313 ID=mRNA_18313|Name=jgi.p|Trimin1|181384|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=570bp|location=Sequence derived from alignment at Contig_254:98243..100932+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GATTGCGTGTTCAAAGGCCCAATCGTCGGACCTCTGAACAAGGTGGACTAback to top protein sequence of jgi.p|Trimin1|181384 >Trimin1|181384|e_gw1.254.17.1 ID=Trimin1|181384|e_gw1.254.17.1|Name=jgi.p|Trimin1|181384|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=190bp DCVFKGPIVGPLNKVDYCNTQAMFRIYRAFPDLEMEFSEFTVDPIEPMRYback to top mRNA from alignment at Contig_254:98243..100932+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18313 ID=mRNA_18313|Name=jgi.p|Trimin1|181384|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2690bp|location=Sequence derived from alignment at Contig_254:98243..100932+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_254:98243..100932+ >mRNA_18313 ID=mRNA_18313|Name=jgi.p|Trimin1|181384|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=570bp|location=Sequence derived from alignment at Contig_254:98243..100932+ (Tribonema minus UTEX_B_3156 )back to top |