mRNA_1829 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|163503
Unique Name	mRNA_1829
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|163503 vs. uniprot
Match: A0A835Z662_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z662_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.750e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1

Query:    1 MVDVLSAKCAADGCVKKPTFEKPDEPGVLYCRGCGGDDAV 120
            MVDVLSAKCAADGCVKKPTFEKPDEPGVLYCRGCGGDDAV
Sbjct:    1 MVDVLSAKCAADGCVKKPTFEKPDEPGVLYCRGCGGDDAV 40

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|163503 vs. uniprot

BLAST of jgi.p|Trimin1|163503 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z662_9STRA	1.750e-16	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_26	contig	Contig_26:231787..233064 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|163503\|e_gw1.26.31.1
Hectar predicted targeting category	other localisation
TranscriptId	163825
Track	FilteredModels1
ProteinId	163503

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163503	gene_1829	Tribonema minus UTEX_B_3156	gene	Contig_26 231787..233064 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1829_1	exon_1829_1	Tribonema minus UTEX_B_3156	exon	Contig_26 231787..233064 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1829	CDS_1829	Tribonema minus UTEX_B_3156	CDS	Contig_26 231787..233064 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|163503	Trimin1\|163503\|e_gw1.26.31.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_26 231787..233064 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_26:231787..233064-
coding sequence from alignment at Contig_26:231787..233064-

spliced messenger RNA

>mRNA_1829 ID=mRNA_1829|Name=jgi.p|Trimin1|163503|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1278bp|location=Sequence derived from alignment at Contig_26:231787..233064- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGACGTCCTCAGTGCAAAATGCGCGGCTGACGGGTGCGTTAAGAA
GCCGACGTTTGAGAAGCCCGACGAGCCAGGTGTGCTCTACTGCCGCGGAT
GCGGCGGTGATGATGCCGTCGACGTCAAGAGCCGGAGGTGTGCGGGCGTC
GGGTGCAACAAGCAGCCGGTGTTTGAGAAGCCCGACGAGCCGGGCGTGCT
ATACTGCCGCGGATGCGGCGGTGATGATGCCGTCGACGTCAAGAGCCGGA
GGTGTGCGGCCGAAGGATGCAATAAGGGACCGTCGTTTGAGAAGCCCGAC
GAGCCGGGCGTGCTATACTGCCGCGGATGCGGCGGTGATGATGCCGTAGA
CGTCAAGAGCCGGAGATGCGCGGCTGACGGGTGCAATAAGCATCCGGCTT
TTGAGAAGCGCGACGAGCCGGGTGTGCTTTACTGCCGTGGCTGCGCCGGC
CCCGACGGCGTCAATGTCGCCTCGAAAAAGTGCGCGGCCCACGGGTGCAA
TAAGCAGCCGGTTTTTGAGAAGCGCGACGAGCCGGGTGTGCTTTACTGCC
GTGGCTGCGCCGGCCCCGACGGCGTCGATGTCACCTCGAAAAAGTGCGCG
GCCGACGGGTGCAATAAGCGGCCGGCATACGAGAATCCCGACGAGCCGGG
CGTGCTCTACTGCCGTGGCTGCACTGGCCCCGACGGCGTCAATGTCAAGA
ACCGGAGGTGCGCGGCCGACGGGTGCAATAAATACCCGGCATTCGAGAAG
CCCGAGGAGCCGGATGTGCTCTACTGCCGCGGCTGCGCCGGCCCCGACGC
CGTCGATGTCAAGAACCGGGCGTGTGCGGTTGACGGGTGTGAAAAGCGAC
CGAGCTTTGAGAACCCCAATGAGCCAGGCGTGCTCTACTGCCGTGCCTGC
GCCGGCCCCGACGCCGTCGATGTCAGACATACGAAGTGTGCGGCTGACGG
GTGCGATAAGGGACCGTCATTCGAGAAGCCTGACGAGCCGGGCGTGCTCT
ACTGCCGTGCCTGCGCCGGCCCCGGCGCCGTCGATATCAGGAGCCGGAGG
TGCGCGGCCGACGGGTGCAATAAGCAGCCGGCATTCGAGAAGCCCGACGA
GCCCGATGTGCTCTACTGTCGTGGCTGTGCCGGCCCTGACGCTGTCAACA
TCCGCAACAAACGGTGCGCGGGCGATGGATGTGACAAGAGCCCATCATTC
GAGAAGCCTAACGAGCCGGGCGTGCTCTACTGCCGTGCCTGCGCCGGCCC
CGGCGCCGTCGATATCAGGAGCCGGAGG

protein sequence of jgi.p|Trimin1|163503

>Trimin1|163503|e_gw1.26.31.1 ID=Trimin1|163503|e_gw1.26.31.1|Name=jgi.p|Trimin1|163503|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=426bp
MVDVLSAKCAADGCVKKPTFEKPDEPGVLYCRGCGGDDAVDVKSRRCAGV
GCNKQPVFEKPDEPGVLYCRGCGGDDAVDVKSRRCAAEGCNKGPSFEKPD
EPGVLYCRGCGGDDAVDVKSRRCAADGCNKHPAFEKRDEPGVLYCRGCAG
PDGVNVASKKCAAHGCNKQPVFEKRDEPGVLYCRGCAGPDGVDVTSKKCA
ADGCNKRPAYENPDEPGVLYCRGCTGPDGVNVKNRRCAADGCNKYPAFEK
PEEPDVLYCRGCAGPDAVDVKNRACAVDGCEKRPSFENPNEPGVLYCRAC
AGPDAVDVRHTKCAADGCDKGPSFEKPDEPGVLYCRACAGPGAVDIRSRR
CAADGCNKQPAFEKPDEPDVLYCRGCAGPDAVNIRNKRCAGDGCDKSPSF
EKPNEPGVLYCRACAGPGAVDIRSRR

mRNA from alignment at Contig_26:231787..233064-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1829 ID=mRNA_1829|Name=jgi.p|Trimin1|163503|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1278bp|location=Sequence derived from alignment at Contig_26:231787..233064- (Tribonema minus UTEX_B_3156 )
ATGGTCGACGTCCTCAGTGCAAAATGCGCGGCTGACGGGTGCGTTAAGAA
GCCGACGTTTGAGAAGCCCGACGAGCCAGGTGTGCTCTACTGCCGCGGAT
GCGGCGGTGATGATGCCGTCGACGTCAAGAGCCGGAGGTGTGCGGGCGTC
GGGTGCAACAAGCAGCCGGTGTTTGAGAAGCCCGACGAGCCGGGCGTGCT
ATACTGCCGCGGATGCGGCGGTGATGATGCCGTCGACGTCAAGAGCCGGA
GGTGTGCGGCCGAAGGATGCAATAAGGGACCGTCGTTTGAGAAGCCCGAC
GAGCCGGGCGTGCTATACTGCCGCGGATGCGGCGGTGATGATGCCGTAGA
CGTCAAGAGCCGGAGATGCGCGGCTGACGGGTGCAATAAGCATCCGGCTT
TTGAGAAGCGCGACGAGCCGGGTGTGCTTTACTGCCGTGGCTGCGCCGGC
CCCGACGGCGTCAATGTCGCCTCGAAAAAGTGCGCGGCCCACGGGTGCAA
TAAGCAGCCGGTTTTTGAGAAGCGCGACGAGCCGGGTGTGCTTTACTGCC
GTGGCTGCGCCGGCCCCGACGGCGTCGATGTCACCTCGAAAAAGTGCGCG
GCCGACGGGTGCAATAAGCGGCCGGCATACGAGAATCCCGACGAGCCGGG
CGTGCTCTACTGCCGTGGCTGCACTGGCCCCGACGGCGTCAATGTCAAGA
ACCGGAGGTGCGCGGCCGACGGGTGCAATAAATACCCGGCATTCGAGAAG
CCCGAGGAGCCGGATGTGCTCTACTGCCGCGGCTGCGCCGGCCCCGACGC
CGTCGATGTCAAGAACCGGGCGTGTGCGGTTGACGGGTGTGAAAAGCGAC
CGAGCTTTGAGAACCCCAATGAGCCAGGCGTGCTCTACTGCCGTGCCTGC
GCCGGCCCCGACGCCGTCGATGTCAGACATACGAAGTGTGCGGCTGACGG
GTGCGATAAGGGACCGTCATTCGAGAAGCCTGACGAGCCGGGCGTGCTCT
ACTGCCGTGCCTGCGCCGGCCCCGGCGCCGTCGATATCAGGAGCCGGAGG
TGCGCGGCCGACGGGTGCAATAAGCAGCCGGCATTCGAGAAGCCCGACGA
GCCCGATGTGCTCTACTGTCGTGGCTGTGCCGGCCCTGACGCTGTCAACA
TCCGCAACAAACGGTGCGCGGGCGATGGATGTGACAAGAGCCCATCATTC
GAGAAGCCTAACGAGCCGGGCGTGCTCTACTGCCGTGCCTGCGCCGGCCC
CGGCGCCGTCGATATCAGGAGCCGGAGG

Coding sequence (CDS) from alignment at Contig_26:231787..233064-

>mRNA_1829 ID=mRNA_1829|Name=jgi.p|Trimin1|163503|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1278bp|location=Sequence derived from alignment at Contig_26:231787..233064- (Tribonema minus UTEX_B_3156 )
ATGGTCGACGTCCTCAGTGCAAAATGCGCGGCTGACGGGTGCGTTAAGAA
GCCGACGTTTGAGAAGCCCGACGAGCCAGGTGTGCTCTACTGCCGCGGAT
GCGGCGGTGATGATGCCGTCGACGTCAAGAGCCGGAGGTGTGCGGGCGTC
GGGTGCAACAAGCAGCCGGTGTTTGAGAAGCCCGACGAGCCGGGCGTGCT
ATACTGCCGCGGATGCGGCGGTGATGATGCCGTCGACGTCAAGAGCCGGA
GGTGTGCGGCCGAAGGATGCAATAAGGGACCGTCGTTTGAGAAGCCCGAC
GAGCCGGGCGTGCTATACTGCCGCGGATGCGGCGGTGATGATGCCGTAGA
CGTCAAGAGCCGGAGATGCGCGGCTGACGGGTGCAATAAGCATCCGGCTT
TTGAGAAGCGCGACGAGCCGGGTGTGCTTTACTGCCGTGGCTGCGCCGGC
CCCGACGGCGTCAATGTCGCCTCGAAAAAGTGCGCGGCCCACGGGTGCAA
TAAGCAGCCGGTTTTTGAGAAGCGCGACGAGCCGGGTGTGCTTTACTGCC
GTGGCTGCGCCGGCCCCGACGGCGTCGATGTCACCTCGAAAAAGTGCGCG
GCCGACGGGTGCAATAAGCGGCCGGCATACGAGAATCCCGACGAGCCGGG
CGTGCTCTACTGCCGTGGCTGCACTGGCCCCGACGGCGTCAATGTCAAGA
ACCGGAGGTGCGCGGCCGACGGGTGCAATAAATACCCGGCATTCGAGAAG
CCCGAGGAGCCGGATGTGCTCTACTGCCGCGGCTGCGCCGGCCCCGACGC
CGTCGATGTCAAGAACCGGGCGTGTGCGGTTGACGGGTGTGAAAAGCGAC
CGAGCTTTGAGAACCCCAATGAGCCAGGCGTGCTCTACTGCCGTGCCTGC
GCCGGCCCCGACGCCGTCGATGTCAGACATACGAAGTGTGCGGCTGACGG
GTGCGATAAGGGACCGTCATTCGAGAAGCCTGACGAGCCGGGCGTGCTCT
ACTGCCGTGCCTGCGCCGGCCCCGGCGCCGTCGATATCAGGAGCCGGAGG
TGCGCGGCCGACGGGTGCAATAAGCAGCCGGCATTCGAGAAGCCCGACGA
GCCCGATGTGCTCTACTGTCGTGGCTGTGCCGGCCCTGACGCTGTCAACA
TCCGCAACAAACGGTGCGCGGGCGATGGATGTGACAAGAGCCCATCATTC
GAGAAGCCTAACGAGCCGGGCGTGCTCTACTGCCGTGCCTGCGCCGGCCC
CGGCGCCGTCGATATCAGGAGCCGGAGG