mRNA_18280 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354495
Unique Name	mRNA_18280
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354495 vs. uniprot
Match: A0A836CGC4_9STRA (PRA1 family protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC4_9STRA)

HSP 1 Score: 670 bits (1728), Expect = 9.240e-242
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 1

Query:  115 MANSSLAEAKAQLQAMLGEVRPWAEFVGPVAPPPKWTLPDIQRRLVANTRFFKANYALLVALMSAYYIVTSPGLLLTLLVCLMLYGAVLLTRRKNYVFMNGAVIVTDTVKMGVATVVTVILLGAMGYLFALQWAVSLGGLVCLAHALLRPPVARALLTQRSEADASAGVRGGDIEGGPGGLGLDDPRNMPANANMRLRSRPFGAPAEPLPGAPIGMPKNRCVSPSNFEIGGVQGLCNVYVSTDSCYIHPQAISIVKSAFAALDFSAQAHRSQSACSSEPLTMRTPRASAAGERVAVTLVAGGRPAYIQCLVRPGAVAAAATAVALLPSPQWGCLGGGXXXXXXXLARGRGYAADYGGAVA 1194
            MANSSLAEAKAQLQAMLGEVRPWAEFVGPVAPPPKWTLPDIQRRLVANTRFFKANYALLVALMSAYYIVTSPGLLLTLLVCLMLYGAVLLTRRKNYVFMNGAVIVTDTVKMGVATVVTVILLGAMGYLFALQWAVSLGGLVCLAHALLRPPVARALLTQRSEADASAGVRGGDIEGGPGGLGLDDPRNMPANANMRLRSRPFGAPAEPLPGAPIGMPKNRCVSPSNFEIGGVQGLCNVYVSTDSCYIHPQAISIVKSAFAALDFSAQAHRSQSACSSEPLTMRTPRASAAGERVAVTLVAGGRPAYIQCLVRPGAVAAAATAVALLPSPQWGCLGGGXXXXXXXLARGRGYAADYGGAVA
Sbjct:    1 MANSSLAEAKAQLQAMLGEVRPWAEFVGPVAPPPKWTLPDIQRRLVANTRFFKANYALLVALMSAYYIVTSPGLLLTLLVCLMLYGAVLLTRRKNYVFMNGAVIVTDTVKMGVATVVTVILLGAMGYLFALQWAVSLGGLVCLAHALLRPPVARALLTQRSEADASAGVRGGDIEGGPGGLGLDDPRNMPANANMRLRSRPFGAPAEPLPGAPIGMPKNRCVSPSNFEIGGVQGLCNVYVSTDSCYIHPQAISIVKSAFAALDFSAQAHRSQSACSSEPLTMRTPRASAAGERVAVTLVAGGRPAYIQCLVRPGAVAAAATAVALLPSPQWGCLGGGXXXXXXXLARGRGYAADYGGAVA 360

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BLAST of jgi.p|Trimin1|354495 vs. uniprot
Match: A0A836CIX2_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.060e-11
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query:  985 GERVAVTLVA----GGRPAYIQCLVRPGAVAAAATAVALLPSPQWGCLGG 1122
            G RVAVTLVA     GRPAYIQCLVRPGAVAAAA AVA LPSPQWGCLGG
Sbjct:  429 GGRVAVTLVAVTDSRGRPAYIQCLVRPGAVAAAAAAVAPLPSPQWGCLGG 478

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354495 vs. uniprot

BLAST of jgi.p|Trimin1|354495 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CGC4_9STRA	9.240e-242	100.00	PRA1 family protein-domain-containing protein n=1 ...	[more]
A0A836CIX2_9STRA	3.060e-11	84.00	BHLH domain-containing protein n=1 Tax=Tribonema m...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_255	contig	Contig_255:68886..72290 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354495\|estExt_Genemark1.C_Ctg_2550010
KEGG TC	1.A.17.1.1,1.A.17.1.22,9.A.49.1
BRITE	ko00000,ko00001,ko00002,ko00199,ko01000,ko02000,ko04040,ko04131
KEGG rclass	RC02078
KEGG Reaction	R07431,R07448,R07786,R07787,R07791,R07792
KEGG Module	M00371
KEGG Pathway	ko00905,ko01100,ko01110,map00905,map01100,map01110
KEGG ko	ko:K12638,ko:K19496,ko:K20359
EC	1.14.13.112
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016032,GO:0016192,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0040011,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044000,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0046739,GO:0046794,GO:0051179,GO:0051234,GO:0051701,GO:0051704,GO:0051814,GO:0052126,GO:0052192,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1902579
Description	vesicle-mediated transport
COG category	U
Max annot lvl	2759\|Eukaryota
EggNOG OGs	KOG3142@1\|root,KOG3142@2759\|Eukaryota
Evalue	0.000822
Seed ortholog	130081.XP_005708590.1
Hectar predicted targeting category	signal anchor
Ec32 ortholog description	Prenylated rab acceptor PRA1
Ec32 ortholog	Ec-11_006030.1
TranscriptId	354817
Track	FilteredModels1
ProteinId	354495

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354495	gene_18280	Tribonema minus UTEX_B_3156	gene	Contig_255 68886..72290 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354495	Trimin1\|354495\|estExt_Genemark1.C_Ctg_2550010	Tribonema minus UTEX_B_3156	polypeptide	Contig_255 69000..72290 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_18280_1	exon_18280_1	Tribonema minus UTEX_B_3156	exon	Contig_255 68886..69202 +
exon_18280_2	exon_18280_2	Tribonema minus UTEX_B_3156	exon	Contig_255 69930..70147 +
exon_18280_3	exon_18280_3	Tribonema minus UTEX_B_3156	exon	Contig_255 71007..71235 +
exon_18280_4	exon_18280_4	Tribonema minus UTEX_B_3156	exon	Contig_255 71815..71965 +
exon_18280_5	exon_18280_5	Tribonema minus UTEX_B_3156	exon	Contig_255 72009..72290 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_18280	UTR5_18280	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_255 68886..68999 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_18280	CDS_18280	Tribonema minus UTEX_B_3156	CDS	Contig_255 69000..69202 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_255:68886..72290+
coding sequence from alignment at Contig_255:68886..72290+

spliced messenger RNA

>mRNA_18280 ID=mRNA_18280|Name=jgi.p|Trimin1|354495|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1197bp|location=Sequence derived from alignment at Contig_255:68886..72290+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACGGCTCGTCGTCCCTCCGCGCTTTGAACTCACGTTTTTTTAATTGCTG
AGCAGTGTGTGCTGATTAAAAAAGCAAAACATCACACACAATTTTTTTTT
CTCGCCCGCACATCATGGCCAATTCGAGTTTGGCGGAGGCAAAGGCGCAG
CTGCAGGCAATGCTGGGGGAGGTGCGGCCATGGGCGGAATTCGTGGGCCC
AGTTGCGCCTCCGCCAAAGTGGACACTTCCAGATATTCAGAGGAGGCTCG
TAGCCAACACGCGCTTCTTCAAGGCCAACTACGCTCTGTTGGTGGCCTTG
ATGAGTGCGTACTACATCGTGACATCCCCGGGGTTGCTGCTCACACTGCT
GGTGTGCCTCATGTTGTACGGAGCGGTGCTGCTGACGCGACGGAAGAACT
ACGTGTTCATGAACGGCGCGGTGATTGTGACGGACACGGTGAAGATGGGG
GTGGCGACGGTGGTGACGGTCATCCTACTGGGGGCTATGGGATACCTGTT
TGCGCTGCAGTGGGCGGTTTCACTTGGAGGTCTGGTCTGCCTGGCACACG
CGCTGCTGCGGCCGCCCGTGGCGCGCGCCCTCCTGACTCAACGCTCAGAA
GCGGACGCATCGGCAGGGGTGAGGGGAGGGGACATTGAGGGGGGGCCCGG
GGGGCTAGGCCTGGATGACCCCCGCAACATGCCCGCCAACGCCAACATGC
GGCTGCGCAGCCGACCGTTTGGGGCCCCTGCGGAGCCACTGCCAGGCGCC
CCAATCGGCATGCCAAAGAACAGGTGCGTCTCGCCCTCGAATTTTGAGAT
AGGCGGCGTGCAGGGCTTGTGCAACGTGTACGTCTCCACCGACTCCTGCT
ACATCCACCCGCAGGCCATCAGCATCGTCAAGTCGGCCTTTGCCGCCTTG
GACTTCTCGGCGCAGGCCCACCGCAGCCAGAGCGCGTGCTCATCTGAGCC
GCTGACGATGAGGACGCCGAGGGCCAGCGCGGCCGGCGAGCGCGTGGCGG
TTACGCTCGTGGCAGGCGGCCGGCCCGCGTACATCCAGTGCCTCGTGCGC
CCCGGCGCGGTGGCGGCGGCGGCGACGGCGGTGGCGCTGCTGCCGTCGCC
GCAGTGGGGGTGCCTGGGGGGGGGGGGGGCGGGGGGAGCAGGGGCCCTTG
CTCGCGGTAGGGGCTATGCCGCTGACTACGGGGGGGCAGTAGCGTAG

protein sequence of jgi.p|Trimin1|354495

>Trimin1|354495|estExt_Genemark1.C_Ctg_2550010 ID=Trimin1|354495|estExt_Genemark1.C_Ctg_2550010|Name=jgi.p|Trimin1|354495|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=361bp
MANSSLAEAKAQLQAMLGEVRPWAEFVGPVAPPPKWTLPDIQRRLVANTR
FFKANYALLVALMSAYYIVTSPGLLLTLLVCLMLYGAVLLTRRKNYVFMN
GAVIVTDTVKMGVATVVTVILLGAMGYLFALQWAVSLGGLVCLAHALLRP
PVARALLTQRSEADASAGVRGGDIEGGPGGLGLDDPRNMPANANMRLRSR
PFGAPAEPLPGAPIGMPKNRCVSPSNFEIGGVQGLCNVYVSTDSCYIHPQ
AISIVKSAFAALDFSAQAHRSQSACSSEPLTMRTPRASAAGERVAVTLVA
GGRPAYIQCLVRPGAVAAAATAVALLPSPQWGCLGGGGAGGAGALARGRG
YAADYGGAVA*

mRNA from alignment at Contig_255:68886..72290+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_18280 ID=mRNA_18280|Name=jgi.p|Trimin1|354495|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3405bp|location=Sequence derived from alignment at Contig_255:68886..72290+ (Tribonema minus UTEX_B_3156 )
CACGGCTCGTCGTCCCTCCGCGCTTTGAACTCACGTTTTTTTAATTGCTG
AGCAGTGTGTGCTGATTAAAAAAGCAAAACATCACACACAATTTTTTTTT
CTCGCCCGCACATCATGGCCAATTCGAGTTTGGCGGAGGCAAAGGCGCAG
CTGCAGGCAATGCTGGGGGAGGTGCGGCCATGGGCGGAATTCGTGGGCCC
AGTTGCGCCTCCGCCAAAGTGGACACTTCCAGATATTCAGAGGAGGCTCG
TAGCCAACACGCGCTTCTTCAAGGCCAACTACGCTCTGTTGGTGGCCTTG
ATGAGTGCGTACTACATGTGAGTCAAGCCATCTTGTCCCGTGATCAGCAT
GCGGTGCCTGTGTCGTGTTTGTTGTCAACCTTCGAGGTTTTATTCACAAA
TCACCGACAACAACTTGCAGTCACCCTGGCGACCTTGCACAGCGACTTGG
CAAATCCATATCGATCATCGATCAGCACGAGTGTCATTTTTTGCCGTTGA
TTACCGTGCCTACAATCCTTGCCATTCACAATCGTCAAAGCAGAAGAACT
GGGGTCCAGTAGCGTCAGCTGAAGCAACTGCCAGCCTCACCGACAACGAC
TGCTGCTGCAAACAAGCTAATACTTTGATTGTATCATTTGAGCGCTTAAT
GCCTGCATCACGCACAACTGGTCGTACTGCGCGTCATTGTGAGCTTCCCT
TCCTTGTCTGCTGAACTCACACTGCCACAACAGATGGCTCCGTAAGTGAC
AACGTGAGCACACAGCATGTGCACGCTGTTCGGCTGCCCCACCGCTGCGC
TGTGTGCAACACCTTCACAATGTCTTGCAAGCGACTCTCATGTCTAGGAC
CTCGTGTTCATGAACACTTGGCCAAGCGGTGATTGCGCTGTAAGCTGTGA
CAGTTGTGGGTCAGCACCATTGTGGGACGCGCAGATGGCACACAAGCGCA
CCTTTGCTGGCACCACATGGTCAACGCGTCACACACGCAAGTCACTCAGA
GTCTGAGCCTTGCTGCCGTCCTCCTCCTTCGCCACATTGCGCAGCGTGAC
ATCCCCGGGGTTGCTGCTCACACTGCTGGTGTGCCTCATGTTGTACGGAG
CGGTGCTGCTGACGCGACGGAAGAACTACGTGTTCATGAACGGCGCGGTG
ATTGTGACGGACACGGTGAAGATGGGGGTGGCGACGGTGGTGACGGTCAT
CCTACTGGGGGCTATGGGATACCTGTTTGCGCTGCAGTGGGCGGTTTCAC
TTGGAGGTCTGGGTGAGCATTGCTCAGCAACATGTGGCGTGTATGTCATC
GAATCTTCACAATGTGCATTTTGGAGGACTCACATGCGTGACAGGTGCCT
GGATGATGTACTGCAGCGGTGTTTGGTGCACGTGAAGTGCAGTGAACACC
GACATGCCCATTGAACGGCAACACTGGGTTGTTGCACAACGCACTTAGCT
GATTGCGGTGATTGTTTGAGCCTCATGGCAGTTGACGCGAGAGCATCAAC
TGCTTGCATGGCAGCTGTGGTTTGCGCATGCCTCACCCATTGTGCGATGG
CATTTGGTGTCAGGCACAGTGCTGATAGATGCATCATGTGTAAGCACGAA
GGAACCCCCTTGCATCAGCACAGTTGATGCCAGTACACTCGATGCATGGG
TGCATTGGTATCTGATGCATGGCTGCACTGGTCCTTTGCATTACCTGCTT
TCGCGCGTCATGACACGAGATCAACATCAACTTCAAGACCCCTGTGTGAC
CCTCTTGAAGTTTTAAACACAAAGTTGATGAACATTAACACCTGCTGCCT
TACTCTGTGACCCACCGTTGCACCGGACTAAGTAGCGCTCATAAATCAGT
GTACCGTGCCGCTCATTGCGCCTCATTTGCCGCCGCCACACATGCCCCAC
ACGCGTGCACTTCCAGCTACTGCGGCTTAACACCGCAATAAGCTGTCGTC
GTGCATGCACGGCAGCAGCGCCCATCGCGCACGCGCACATCTAATGAAAA
CGAATCATAAGATTGTAGAGCTCTAGGTGACAAGGTGTGGTCAGCCGTCA
GATTGAATGCCTTTCACCAATAACCGTCTAATCCGCCGTTTATTTCCTGC
GCCTGCCCCTGCGCCGCGCAGTCTGCCTGGCACACGCGCTGCTGCGGCCG
CCCGTGGCGCGCGCCCTCCTGACTCAACGCTCAGAAGCGGACGCATCGGC
AGGGGTGAGGGGAGGGGACATTGAGGGGGGGCCCGGGGGGCTAGGCCTGG
ATGACCCCCGCAACATGCCCGCCAACGCCAACATGCGGCTGCGCAGCCGA
CCGTTTGGGGCCCCTGCGGAGCCACTGCCAGGCGCCCCAATCGGCATGCC
GTACGCTCACACGCACACGAGCTGATGGCGGCGGTTCGCGCGCGAGAGGG
TGGTGGTTGGTGCACCGATTGGTGTCTGGTCAGTGTGTCTTTTGATCCGT
GTGGATGGGGGAAACCGGTGGTGGGCAAACTGCCTATGGGGGGTGATGCG
CACTTCGGTCACACACACACGAGAGCTGATGCGGTGTGGGGTGGCGGTGC
GCGCATGTGTCAGGTGTGGTGTCCACTGCTGGTCCCTGCGATGGAGGTTA
CTTGAAGTTCGCTTTGCATGTTTGCACGTTGGTTGGGGTTGGGTGACGGG
TGTGTGTGGGGCGAGCGCGCAGGGCTTGCGTCTGCTGCTGGCCCCGGGGT
CTGTGTCTGTAATGTACTTACTTCCAAGTTGAAGTGCTCATTACCCCATC
GCCATCAATTGCTCTTGTTCATGCTGTCGCATTGCGGTGTTCATAGACCC
TGTTTGCAAACACTGCATTGCCTCATTCGCTTGAGTAGACTCTGCCTGTT
CTGTTTGGGAGAGTGTTCGAGGATTGCTTGATGAGCGGTTTTTGGCAGCG
ATATCTGTTTGGTCCGGTCTTGACCCCAGAAAGAACAGGTGCGTCTCGCC
CTCGAATTTTGAGATAGGCGGCGTGCAGGGCTTGTGCAACGTGTACGTCT
CCACCGACTCCTGCTACATCCACCCGCAGGCCATCAGCATCGTCAAGTCG
GCCTTTGCCGCCTTGGACTTCTCGGCGCAGGTCAGTATCATTGAAGAGGC
CGCAGCTCTTGGCGAATGCACAGGCCCACCGCAGCCAGAGCGCGTGCTCA
TCTGAGCCGCTGACGATGAGGACGCCGAGGGCCAGCGCGGCCGGCGAGCG
CGTGGCGGTTACGCTCGTGGCAGGCGGCCGGCCCGCGTACATCCAGTGCC
TCGTGCGCCCCGGCGCGGTGGCGGCGGCGGCGACGGCGGTGGCGCTGCTG
CCGTCGCCGCAGTGGGGGTGCCTGGGGGGGGGGGGGGCGGGGGGAGCAGG
GGCCCTTGCTCGCGGTAGGGGCTATGCCGCTGACTACGGGGGGGCAGTAG
CGTAG

Coding sequence (CDS) from alignment at Contig_255:68886..72290+

>mRNA_18280 ID=mRNA_18280|Name=jgi.p|Trimin1|354495|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1083bp|location=Sequence derived from alignment at Contig_255:68886..72290+ (Tribonema minus UTEX_B_3156 )
ATGGCCAATTCGAGTTTGGCGGAGGCAAAGGCGCAGCTGCAGGCAATGCT
GGGGGAGGTGCGGCCATGGGCGGAATTCGTGGGCCCAGTTGCGCCTCCGC
CAAAGTGGACACTTCCAGATATTCAGAGGAGGCTCGTAGCCAACACGCGC
TTCTTCAAGGCCAACTACGCTCTGTTGGTGGCCTTGATGAGTGCGTACTA
CATCGTGACATCCCCGGGGTTGCTGCTCACACTGCTGGTGTGCCTCATGT
TGTACGGAGCGGTGCTGCTGACGCGACGGAAGAACTACGTGTTCATGAAC
GGCGCGGTGATTGTGACGGACACGGTGAAGATGGGGGTGGCGACGGTGGT
GACGGTCATCCTACTGGGGGCTATGGGATACCTGTTTGCGCTGCAGTGGG
CGGTTTCACTTGGAGGTCTGGTCTGCCTGGCACACGCGCTGCTGCGGCCG
CCCGTGGCGCGCGCCCTCCTGACTCAACGCTCAGAAGCGGACGCATCGGC
AGGGGTGAGGGGAGGGGACATTGAGGGGGGGCCCGGGGGGCTAGGCCTGG
ATGACCCCCGCAACATGCCCGCCAACGCCAACATGCGGCTGCGCAGCCGA
CCGTTTGGGGCCCCTGCGGAGCCACTGCCAGGCGCCCCAATCGGCATGCC
AAAGAACAGGTGCGTCTCGCCCTCGAATTTTGAGATAGGCGGCGTGCAGG
GCTTGTGCAACGTGTACGTCTCCACCGACTCCTGCTACATCCACCCGCAG
GCCATCAGCATCGTCAAGTCGGCCTTTGCCGCCTTGGACTTCTCGGCGCA
GGCCCACCGCAGCCAGAGCGCGTGCTCATCTGAGCCGCTGACGATGAGGA
CGCCGAGGGCCAGCGCGGCCGGCGAGCGCGTGGCGGTTACGCTCGTGGCA
GGCGGCCGGCCCGCGTACATCCAGTGCCTCGTGCGCCCCGGCGCGGTGGC
GGCGGCGGCGACGGCGGTGGCGCTGCTGCCGTCGCCGCAGTGGGGGTGCC
TGGGGGGGGGGGGGGCGGGGGGAGCAGGGGCCCTTGCTCGCGGTAGGGGC
TATGCCGCTGACTACGGGGGGGCAGTAGCGTAG