mRNA_18275 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354490
Unique NamemRNA_18275
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Match: A0A835Z8G0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G0_9STRA)

HSP 1 Score: 724 bits (1870), Expect = 1.090e-260
Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 1 
Query:    1 MAAGIRKQETMEHIDLYHTLGKGMSGRRVAVTTVLLRVIADAPLEYTAALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKVKQQKALAEQREQARKRAAPAPVFTVAAATGPFEPRYACVVTPSNNAHAAAAAYGDYGSYNTSSKRTRTASAPMAVPCTSAAVAFRSRAPVAAAVAVAVSAQI 1131
            MAAGIRKQETMEHIDLYHTLGKGMSGRRVAVTTVLLRVIADAPLEYTAALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKVKQQKALAEQREQARKRAAPAPVFTVAAATGPFEPRYACVVTPSNNAHAAAAAYGDYGSYNTSSKRTRTASAPMAVPCTSAAVAFRSRAPVAAAVAVAVSAQI
Sbjct:    1 MAAGIRKQETMEHIDLYHTLGKGMSGRRVAVTTVLLRVIADAPLEYTAALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKVKQQKALAEQREQARKRAAPAPVFTVAAATGPFEPRYACVVTPSNNAHAAAAAYGDYGSYNTSSKRTRTASAPMAVPCTSAAVAFRSRAPVAAAVAVAVSAQI 377
[Close]
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Match: A0A835YYP7_9STRA (Serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP7_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.770e-60
Identity = 125/245 (51.02%), Postives = 159/245 (64.90%), Query Frame = 1 
Query:  142 AALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVL-GPTLAATSLQAEMTPRQSKVKQQKALAEQREQARKR 873
            AALVLELA  GELF+++MHTG   +  ART F+QL SAMV CHA GV+HRDLK EN+LLD  F+LK+ADFGLA  M    S    C  KCGT SYMAPEV A +R  D TKADVW+A V+LFIM+AG+PPF  A  +D  +           +A  C   DR  FW AHL+  P FP  A+ L++ +FVEDP +R +F Q+ +HPW+  GP      L+ E+  R ++V+  KAL +QRE  +KR
Sbjct:   72 AALVLELAEAGELFEFVMHTGSFPDPLARTLFSQLTSAMVQCHANGVSHRDLKPENVLLDGRFQLKVADFGLAAVMDSTDS-GAMCVTKCGTRSYMAPEVLAGRRAYDPTKADVWSAGVVLFIMIAGNPPFEEASSTDWWY-----------LACRCGRYDR--FWAAHLRTCPDFPTLAQDLLNKIFVEDPTKRPTFEQIREHPWLKEGPVWEPAQLEMELRQRLARVQTSKALQKQRELIKKR 302
[Close]
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Match: D7G6D0_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D0_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 2.250e-55
Identity = 110/231 (47.62%), Postives = 152/231 (65.80%), Query Frame = 1 
Query:  148 LVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKVKQQKA 840
            LVLELA GGELFD++M+TG   E+ ARTYF Q+ SA+  CH+ G+AHRD+K ENILLD+NF+L++ADFGL+  M +    +G C  +CGT SYMAPEV A K+  D  +AD+W+A V+LFIM+AG+PPF +A  +D  F+ +  G+  R             FW AHL+  P FPP A+  ++ +FV DP QR +  +L  H W+ G TL A +L  E+  R+ +V  +KA
Sbjct:  101 LVLELAVGGELFDFMMYTGAFPEVIARTYFCQMLSALEMCHSTGIAHRDIKPENILLDNNFQLRMADFGLSSIMEDE---NGVCYTECGTRSYMAPEVLA-KQPYDGAQADLWSAGVVLFIMLAGNPPFQMAVSTDWWFRAVSSGRHDR-------------FWAAHLRGCPDFPPLAQAFLNRIFVADPLQRATLEELKSHEWLAGGTLPAHTLYDELLQRKRRVDDRKA 314
[Close]
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Match: A0A4D9CWE3_9STRA (Protein kinase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWE3_9STRA)

HSP 1 Score: 192 bits (487), Expect = 6.180e-49
Identity = 122/326 (37.42%), Postives = 166/326 (50.92%), Query Frame = 1 
Query:    7 AGIRKQETMEHIDLYHTLGKGMSGR-----------RVAVTTV-----LLRVIADAPLEYTA--------------------------------ALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKVKQQKA 840
            AG R ++ M   ++  TLGKGMSG+            VA+  +     + R +     E TA                                AL L+LA GGELFD++M+TG   E+ ART F QL  AM  CH   + HRD+K EN+LLD NF+LK+ADFGLA    +P  +      +CGT SYMAPE+  +  G +  K DVW+  V+LFI++AG+PPF +A R D  F  L             ++ D   FW AHL+  P FPPAA+  + SLF   P++R +  Q+    W+ GP L    L AEM  RQ+ V ++KA
Sbjct:  310 AGGRPRQVMGQYEILETLGKGMSGKVKKARHILTGQEVALKIIDKSKAVKRTLLQLRTEITALKTVRHPNVLELLHVELDAIYVKKNGTKVPSIALALQLAAGGELFDFMMYTGYFREVVARTLFRQLVGAMQYCHDRNIYHRDIKPENLLLDSNFQLKIADFGLAAIRSDPLDV---LRTECGTRSYMAPEIL-QHEGYEGEKVDVWSMGVVLFILLAGNPPFQMARRGDWWFNAL-------------LENDWERFWKAHLKYAPHFPPAAQTFLSSLFQPIPSRRPNTEQVLHSEWLAGPCLTPDQLHAEMAARQANVAREKA 618
[Close]
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Match: A0A6G0XAL3_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAL3_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.460e-45
Identity = 101/231 (43.72%), Postives = 140/231 (60.61%), Query Frame = 1 
Query:  133 EYTAALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKV 825
            E    +VLELA GGELFD++M+TG  SE  ARTYF QL S +  CH  GV HRD+K EN+LLD NF L++ADFGL+  + E  S+    + +CGT +YM+PEV +     +   ADVW+A V+LFI++ G PPF +A R D  F+             AC     ++FW AH + T  F P A  L+  +F  +PA R++  ++  HPW+  PTL+  +L AE+T R+ KV
Sbjct:  107 EKIVLVVLELATGGELFDFMMYTGSFSEQIARTYFRQLVSGLHACHTAGVYHRDIKPENLLLDGNFLLRIADFGLSA-LSEDTSLPDELTTQCGTRAYMSPEVISGVL-YEGAPADVWSAGVVLFILLGGFPPFQIATRQDWWFR-------------ACAMQQYQAFWAAHSR-TAVFSPLAMDLMTRIFDVNPATRITLPEIWSHPWLHEPTLSEEALTAELTARKEKV 321
[Close]
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Match: A0A397CY75_9STRA (Protein kinase domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CY75_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.640e-45
Identity = 96/231 (41.56%), Postives = 141/231 (61.04%), Query Frame = 1 
Query:  133 EYTAALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKV 825
            E    +VLELA GGELFD++M+TG  SE  ARTYF Q+ S +  CH+ GV HRD+K EN+LLD NF L++ADFGL+  + +  +++   + +CGT +YM+PE+ A     +   AD+W+A V+LFI++AG PPF +A R D  F+             AC      +FW AH + T  F P A  L+  +F  +P  R++ A++ QHPW+  P L+ T++  E+  R+ KV
Sbjct:   87 EKVVLVVLELATGGELFDFMMYTGSFSEEIARTYFRQMVSGLHACHSAGVYHRDIKPENLLLDKNFLLRIADFGLSA-LSDDTTLADDLTTQCGTRAYMSPEIIAGTP-YEGAPADIWSAGVVLFILLAGFPPFQIATRQDWWFR-------------ACATQQYEAFWAAHSR-TAVFSPMATDLLTRIFDVNPTTRLTLAEIWQHPWLHEPVLSETAMTNELLARKEKV 301
[Close]
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Match: A0A485KHJ1_9STRA (Aste57867_5817 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KHJ1_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.010e-44
Identity = 97/231 (41.99%), Postives = 138/231 (59.74%), Query Frame = 1 
Query:  133 EYTAALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKV 825
            E    +VLELA GGELFD++M+TG  SE  ARTYF QL S +  CH  GV HRD+K EN+LLD  F L++ADFGL+  + +  S+    + +CGT +YM+PEV +     +   ADVW+A V+LFI++AG PPF +A R D  F+             AC     ++FW AH + T  F P A  L+  +F  +PA R +  ++  HPW+  P L+  ++ AE++ R+ KV
Sbjct:   87 EKVVLVVLELASGGELFDFMMYTGNFSEQIARTYFRQLVSGLHACHTTGVYHRDIKPENLLLDSKFLLRIADFGLSA-LSDDTSLPDELTTQCGTRAYMSPEVISGNP-YEGAPADVWSAGVVLFILLAGFPPFQIATRQDWWFR-------------ACAMQQYQAFWAAHSR-TATFSPMAMDLLTRIFDVNPATRFTLPEIWAHPWMQEPVLSEEAMTAELSARKEKV 301
[Close]
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Match: A0A418AN82_9STRA (Protein kinase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AN82_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.500e-44
Identity = 98/231 (42.42%), Postives = 141/231 (61.04%), Query Frame = 1 
Query:  133 EYTAALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKV 825
            E    +VLELA GGELFD++M TG  SE  ARTYF QL S +  CH  GV HRD+K EN+LLD +F+L++ADFGL+  + E  S++   + +CGT +YM+PE+ A     + + ADVW+A V+LFI++AG PPF +A R D  F+             AC     ++FW AH + T  F P A  L+  +F  +PA R++  ++ QHPW+  P L+  ++  E+  R+ KV
Sbjct:  107 EKVVLVVLELATGGELFDFMMFTGHFSEEIARTYFRQLVSGLHACHVQGVYHRDIKPENLLLDKDFQLRIADFGLSA-ISEDLSVADDLTTQCGTRAYMSPEIIAGTP-YEGSPADVWSAGVVLFILLAGFPPFQIATRQDWWFR-------------ACAMQQYQAFWAAHSR-TAVFSPMAMDLLTRIFDVNPATRITLQEIWQHPWMHEPVLSDAAMTKELMARKEKV 321
[Close]
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Match: A0A1V9Z6T2_9STRA (CBL-interacting serine/threonine-protein kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6T2_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.490e-43
Identity = 119/317 (37.54%), Postives = 170/317 (53.63%), Query Frame = 1 
Query:    1 MAAGIRKQETMEHIDLYHTLGKGMSGRRVAVTTVLLRVIADAPLEY---------TAALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKVKQQKALAEQREQARKRAAPAPVFTVAAATGPFE 924
            +A  + K +T+ +   ++   +  S +RV    VL  +     +EY            +VLELA GGELFD++M+TG  SE  ARTYF QL S +  CH+  V HRD+K EN+LLD N+ L++ADFGL+    +   +      +CGT SYM+PEV +     +   ADVW+A V+LFI++AG PPF +A R D  F+             AC      +FW AH + T  F P A  L+  +F  +PA R++  ++ QHPW+  P L    L AEM  R  KV+ +K L  ++    K AA AP  T + A  PF+
Sbjct:   34 VALKLIKADTLSNKACHNLFREIESMKRVQHPNVLRLLAVKKDVEYPKKKGGVMKVVLVVLELASGGELFDFMMYTGSFSEEIARTYFRQLVSGLHECHSKQVFHRDIKPENLLLDQNYILRIADFGLSALGDQSTELM----TQCGTRSYMSPEVLSGSP-YEGAPADVWSAGVVLFILLAGFPPFQIATRQDWWFR-------------ACAMKQYHAFWAAHSR-TAVFSPMAMDLLTRIFDTNPASRLTLPEIWQHPWMHEPMLPDADLTAEMKTRTEKVQAEKLLLRKQ----KEAAAAP--TNSGAFNPFD 325
[Close]
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Match: A0A662YGM2_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGM2_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.720e-43
Identity = 96/242 (39.67%), Postives = 137/242 (56.61%), Query Frame = 1 
Query:  121 DAPLEYTAALVLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLKLENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAEKRGC---DATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDMAKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQHPWVLGPTLAATSLQAEMTPRQSKVKQQK 837
            D   +    +VLELA GGELFD++M+TG  SE  AR YF QL + +  CHA GV HRD+K EN+LLD+NF LK+ADFGL+               +CGT  YM+PEV +    C   +   ADVW+A V+LFIM++G PPF +A   D  F+             AC      +FW AH + +  F P A  L+  +F   P +R++ A++  HPW    T+A  +L+ E+  R+ +V+++K
Sbjct:  104 DGSSKQVIVIVLELASGGELFDFMMYTGCFSESIARAYFQQLVAGLEACHAQGVYHRDIKPENLLLDENFALKIADFGLSGLREGADGAVAELYTQCGTRGYMSPEVLS----CMPYEGEPADVWSAGVVLFIMLSGFPPFQIATNQDWWFR-------------ACATKQHEAFWAAHAR-SAVFSPGAMSLMTRIFCVTPQERITLAEIKTHPWFQEATVAPETLRTELLSRKLQVEEEK 327
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354490 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8G0_9STRA1.090e-260100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YYP7_9STRA3.770e-6051.02Serine/threonine protein kinase n=1 Tax=Tribonema ... [more]
D7G6D0_ECTSI2.250e-5547.62Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A4D9CWE3_9STRA6.180e-4937.42Protein kinase domain-containing protein n=2 Tax=M... [more]
A0A6G0XAL3_9STRA1.460e-4543.72Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A397CY75_9STRA2.640e-4541.56Protein kinase domain-containing protein n=8 Tax=A... [more]
A0A485KHJ1_9STRA2.010e-4441.99Aste57867_5817 protein n=1 Tax=Aphanomyces stellat... [more]
A0A418AN82_9STRA2.500e-4442.42Protein kinase domain-containing protein n=2 Tax=A... [more]
A0A1V9Z6T2_9STRA2.490e-4337.54CBL-interacting serine/threonine-protein kinase n=... [more]
A0A662YGM2_9STRA3.720e-4339.67Protein kinase domain-containing protein (Fragment... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_255contigContig_255:38838..43984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354490|estExt_Genemark1.C_Ctg_2550005
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04113,ko04138,map04113,map04138
KEGG koko:K12761
EC2.7.11.1
DescriptionKinase-like
COG categoryT
Max annot lvl4776|Peronosporales
EggNOG OGsKOG0285@1|root,KOG0583@1|root,KOG0285@2759|Eukaryota,KOG0583@2759|Eukaryota,3QB32@4776|Peronosporales
Evalue5.48e-43
Seed ortholog325452.fgenesh_scip_prom.46568.5225
Hectar predicted targeting categoryother localisation
TranscriptId354812
TrackFilteredModels1
ProteinId354490
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354490gene_18275Tribonema minus UTEX_B_3156 geneContig_255 38838..43984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354490Trimin1|354490|estExt_Genemark1.C_Ctg_2550005Tribonema minus UTEX_B_3156 polypeptideContig_255 39331..43984 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18275_9exon_18275_9Tribonema minus UTEX_B_3156 exonContig_255 38838..39612 -
exon_18275_8exon_18275_8Tribonema minus UTEX_B_3156 exonContig_255 40099..40155 -
exon_18275_7exon_18275_7Tribonema minus UTEX_B_3156 exonContig_255 40702..40890 -
exon_18275_6exon_18275_6Tribonema minus UTEX_B_3156 exonContig_255 41151..41189 -
exon_18275_5exon_18275_5Tribonema minus UTEX_B_3156 exonContig_255 41309..41437 -
exon_18275_4exon_18275_4Tribonema minus UTEX_B_3156 exonContig_255 41666..41860 -
exon_18275_3exon_18275_3Tribonema minus UTEX_B_3156 exonContig_255 42339..42449 -
exon_18275_2exon_18275_2Tribonema minus UTEX_B_3156 exonContig_255 43222..43273 -
exon_18275_1exon_18275_1Tribonema minus UTEX_B_3156 exonContig_255 43905..43984 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18275UTR3_18275Tribonema minus UTEX_B_3156 three_prime_UTRContig_255 38838..39330 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18275CDS_18275Tribonema minus UTEX_B_3156 CDSContig_255 43905..43984 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18275 ID=mRNA_18275|Name=jgi.p|Trimin1|354490|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1627bp|location=Sequence derived from alignment at Contig_255:38838..43984- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGGGCATACGAAAACAGGAGACCATGGAGCACATCGACTTGTA
CCACACCCTGGGCAAGGGCATGAGCGGACGTCGCGTTGCGGTTACAACTG
TGTTGTTGCGCGTCATCGCCGACGCCCCCCTCGAGTACACAGCAGCGCTC
GTACTGGAGTTGGCGGGCGGCGGAGAGCTGTTTGACTACATCATGCACAC
GGGCAGGCTGTCGGAGCTAACGGCGCGGACATACTTTGCTCAGCTGTGCA
GTGCCATGGTCTGCTGCCACGCCTTGGGAGTAGCTCATCGCGACCTGAAG
CTCGAAAACATCCTGCTCGATGACAACTTCAAGTTGAAGTTGGCCGACTT
TGGCCTTGCGCGCTTCATGTGCGAGCCTCCGTCCATCTCAGGCGGCTGCA
GCGCAAAGTGCGGAACCGCGAGCTACATGGCGCCTGAGGTGTACGCCGAA
AAGCGTGGGTGTGATGCAACCAAGGCCGATGTGTGGGCAGCAGCCGTCCT
GCTATTCATCATGGTCGCCGGACACCCGCCCTTCACCGTCGCTGACAGAT
CCGACCCCCTGTTCAAGACCTTGGACTACGGTCAAAGGGTCAGGGACATG
GCTAAGGCGTGCATGGACACCGACCGCAGATCTTTCTGGAACGCCCACCT
CCAAGTGACGCCTGCCTTCCCACCGGCAGCGCGCGTCCTCATAGACAGCC
TCTTCGTAGAAGACCCTGCGCAGCGCATGTCCTTCGCGCAGCTGGCGCAG
CACCCGTGGGTGCTGGGACCGACCCTGGCTGCAACGTCGCTGCAGGCGGA
GATGACACCTCGCCAATCCAAGGTCAAACAGCAGAAGGCGCTTGCAGAGC
AGAGGGAGCAGGCACGCAAACGCGCCGCCCCCGCCCCCGTCTTCACCGTC
GCCGCCGCCACGGGCCCGTTTGAGCCGCGCTACGCGTGCGTCGTGACGCC
GAGCAACAACGCCCACGCCGCCGCAGCCGCTTACGGCGATTACGGCAGTT
ACAACACCAGCAGCAAGCGCACCCGGACGGCGTCCGCGCCCATGGCGGTG
CCCTGCACATCGGCCGCCGTCGCGTTTCGCTCGCGCGCGCCCGTCGCCGC
GGCGGTCGCAGTCGCCGTGAGTGCGCAGATCTAGGGCTAGGGCTAGCGCA
CCACGGCAGTGCTCGACCGCTTGCTGCTTAGCGGTACTGCGTGCGCGCCC
GTGGTACAGCTGAGCACTGCTGCTGCTCGCTCATATTAAAAAAAAAATCA
TGATCGCCCCCCACACCTTACAAGCACCTGTGAAGACCCCCCCCCACCCC
CCCCTCGGCACACGCTTCTGTAAGGGCGCAACAACTGTCGCGCTCGAGGC
TTCGGACACCCGATCTACAACATGTAGTACGCAGAGCAGCCGCCGCCCCC
CTTTACAGCACAGCACACCTCACCTGCCCCCAACTTCAAGTTAGTGACCC
CCCACCTCAAGTTAGTGACTCTCCGGCGGTTGAGCGCTTCCTCCTAGGCG
CCCATTCGACTGCCCCTCGAAATCATCTGGCCGCCACGCTGCCAGCTGAC
GGTGCTGCAACAGCCATCAGTGTTCTGGTTCCCGATACAGCGAAACTCTT
CGCTGCCCCCCCCCCCCCCCCCCCCCC
back to top

protein sequence of jgi.p|Trimin1|354490

>Trimin1|354490|estExt_Genemark1.C_Ctg_2550005 ID=Trimin1|354490|estExt_Genemark1.C_Ctg_2550005|Name=jgi.p|Trimin1|354490|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=378bp
MAAGIRKQETMEHIDLYHTLGKGMSGRRVAVTTVLLRVIADAPLEYTAAL
VLELAGGGELFDYIMHTGRLSELTARTYFAQLCSAMVCCHALGVAHRDLK
LENILLDDNFKLKLADFGLARFMCEPPSISGGCSAKCGTASYMAPEVYAE
KRGCDATKADVWAAAVLLFIMVAGHPPFTVADRSDPLFKTLDYGQRVRDM
AKACMDTDRRSFWNAHLQVTPAFPPAARVLIDSLFVEDPAQRMSFAQLAQ
HPWVLGPTLAATSLQAEMTPRQSKVKQQKALAEQREQARKRAAPAPVFTV
AAATGPFEPRYACVVTPSNNAHAAAAAYGDYGSYNTSSKRTRTASAPMAV
PCTSAAVAFRSRAPVAAAVAVAVSAQI*
back to top

mRNA from alignment at Contig_255:38838..43984-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18275 ID=mRNA_18275|Name=jgi.p|Trimin1|354490|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5147bp|location=Sequence derived from alignment at Contig_255:38838..43984- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGGGCATACGAAAACAGGAGACCATGGAGCACATCGACTTGTA
CCACACCCTGGGCAAGGGCATGAGCGGACGGTGAGTATCGCGCTTGCTCT
CTCACGCCGCAGGCCGCCGTTGCGAAAAAACATGCCACGGCAGGCCCGGA
GCCGCAATGGCGCCATGCAAGTACACGCCTCTGCGTTGAATCTACTCGTT
GCGATGCATTGCGTCGGGGTGCGGCGAACCATCACAACGCGCGTGATGTA
TGGTTCATCTTCCGGTGTTGACCCATTTCAAAAATGGCCGATGAATCGGA
TACACCAGGGCAATCATGCGACGACACCCGCCGACGACTGCTGGAGTGCC
AGCGCTGTGTTGCGCTTACATCACGTTTTCTGCGCCATGATGTGCTCAGC
AAGCGATGCTGTCATTCAACCGGCATGTCAAGTCAAACACTTCGTCGCTG
CTGCAAATCCTGTTGCACTCCAGAGTAAAGCTTGGCCAGGACAGGCGGAC
GGACGCGCTGGTGGCTGTCAAAATGGTGGACTATAAGCGCTTGGCGCATG
CACAGGAGCAGTTGCAGCTGCAGCGCGAGATTCAGGCAAGATTTACATGA
TTTGCCTGATGCCATCACGCTGGAGCGCTTTCACCCACGTCGCGCTGCGC
GCCGATGCGGTCAACAGGTGTAGCTGCTCATGCCTAATGGCCGCAGTTCG
GCATTGTGCAGTCGCGTTGCGGTTACAACTGTGTTGTTGCGCGTCATCGC
CGACGCCCCCCTCGTGCCGGCCTGGAGTGGCGCACAATCGTCATCCACGT
GTCACTGCTTCTGTGCACAGAAGCACCAGTACTGCAACCTGTCCTTGCTG
GCCGCTCGCGCTGCTTGCTGATGATTGCACGTCACCTCAGGCGGCGGCTG
TGCTGCGCCGCCTGATGTTTCATCACCTTCAGTCATTGAGCACACTATGT
CGGTAAGCAGTCATGTTGGCAAGTGTTGTGCAGACGGCATGTTACTGTTC
ACGTTTCTAATCGCCGTCAAATGCGATCTCCTGGTGCTGGCTGCGCGCAT
GCAGGCCTTACAGATGCTCAATGGGCACCCGCACGTCCTTCAGTTGCACG
AATTTCACCCGTGCGTTCGGCAATGGAAACTGAACGAGCACATGCAGCCA
GAAGAGGCAAGCACGCTGCACATCTGTTGCGCAGTGAGGTGTGACTGCAG
TGTGCTTTATGTGAGCTCATTGCTGCCCTGGCATCTCCTGGGTCTCAATA
TACATCAACACTGCCAACACAGGACCAGAGATGCAGTCACACATGCACAC
AGACAGCAGCCTAGCTGCGTGTAGCCAGGCATACAATACACACCCATGCT
GTGAATCTGGCTGCATGATCATATTGCCTCAAGGTGATGATCTCCGCTGC
CATCTCAAGCGTTCAATGGCCAAGGCGAGTCAGCCTCTGCTTGCTGAAAA
GCATCAACTTCCCAGCATCATACCTATGTCACATGGTCGCATGAACTGAC
AGTGTACTCTGACGGCACTGTGTGTACCGCGACAGGAGTACACAGCAGCG
CTCGTACTGGAGTTGGCGGGCGGCGGAGAGCTGTTTGACTACATCATGCA
CACGGGCAGGCTGTCGGAGCTAACGGCGCGGACATACTTTGCTCAGGTAA
GCAACGTTCACACTAAGGGTTAGATTAGGGGTTGCAATCAATCACGGCGC
ACCGCTAGTCGGCATCCAATTCAGCTCAGTGACCCACTGCTGTCCAGCTG
CCCTGCAAGATCAGCTACATACAGTATAGGTCAAAATGCCGCGTCAACAT
GGATCGCTGGGAGTAGACAATTCCGTGCCACGCAGTTGCATTTGGCAGAG
GGCAAGGACGTTCAAGGCGTCTTGATGCCGATGCCTTGAGAGCTCATTAT
AGCGCTTGCGGTGTGAGGCAACATGGAGCACACCGCAGCTGGGACTGGTG
CTGCTCACTGCTGCGCAAACTCATGCAGCGCCACCCCCAATCCTTCTCGT
GGAAGGGGCACATTGCATCTCACATGCACAGGCCAACTGCTCACTGCCAC
CCTCATGTACCCCTGGCACACTTGCTCAATATACACACCCCCTCCCCCCC
TCTCAATCCCTTTCGCACTCACAGCTGTGCAGTGCCATGGTCTGCTGCCA
CGCCTTGGGAGTAGCTCATCGCGACCTGAAGCTCGAAAACATCCTGCTCG
ATGACAACTTCAAGTTGAAGTTGGCCGACTTTGGCCTTGCGCGCTTCATG
TGCGAGCCTCCGTCCATCTCAGGCGGCTGCAGCGCAAAGTGCGGAACCGC
GAGCTACATGGCGCCTGAGGTACGTAGATACACACAAGCAGCTGCAGTCT
GCTCTCACGCCACTCCCTCTCTGCAAATGTGCTGATGCACCGTCTCTTGT
GTTATTTGCCTCCTGCGAGTGCCACGGCACACTCATCACTGAGGACTGCC
ACTCGACTTCCTCACCGCTGGTGCGTCACTTGAGGTTTGAAGTTGTGCTG
ACGCTCGTGCCACCTGCCCGTACCTATGTATACACCCCCCCCCTCAGGTG
TACGCCGAAAAGCGTGGGTGTGATGCAACCAAGGCCGATGTGTGGGCAGC
AGCCGTCCTGCTATTCATCATGGTCGCCGGACACCCGCCCTTCACCGTCG
CTGACAGATCCGACCCCCTGTTCAAGGTGAGACTGCCAGCTAGAACTCGC
TTATTAGGCCTCGTTCTGGTGAGCGCTGCCTGCATTCATGCTGGGTACGT
GAGCATCACAGGGCGCTTGCACGAGCCCGCTGCTCTTGCATGCAGACCTT
GGACTACGGTCAAAGGGTCAGGGACATGGCTAAGGTCAGGCACATCTGTC
ATGCCCTTTGCCCCACCTCACAAATCATGACCTACGAGCTCCTGCACTCA
CCCCTGCTGCGAAGACCTCGCAGGTCTCCTGCACTGGGACATCAATGTGG
TCTTTGCATTTACTTTTGAGACAGCGGCCATGCTCGAGGCACAGCCTCTT
GCACACGCCTTCGCAACATGCACAAGCACAGGCCCCCAGAGCCCCCTGAC
TGACCTCGACGTACTCGCAACCTAACCCCCCCCCGCCCCTTCAGGCGTGC
ATGGACACCGACCGCAGATCTTTCTGGAACGCCCACCTCCAAGTGACGCC
TGCCTTCCCACCGGCAGCGCGCGTCCTCATAGACAGCCTCTTCGTAGAAG
ACCCTGCGCAGCGCATGTCCTTCGCGCAGCTGGCGCAGCACCCGTGGGTG
CTGGGACCGACCCTGGCTGCAACGTCGCTGCAGGTGAGCCTGACTGAGCA
CGGATGCTTAGGGTTTTAGGGTTATAGCATATTGCAGCAGCGCTCATATG
ACCCTGGGTGCTGCGTTAATGCAGGTGAGCCTGACTGAGCACTGATGCTT
AGGGTTAGGGTTAAGTCACATTGCAGCAGCGCTCATCTGACCCTGGCCGC
CGCGTCGCTGCGGGCGAGCCTGACTGAGCACTGACGCTTAGGGTTAGGGT
TAAGTCACATTGCAGCAGCGCTCATCTCACTCTCGGTGTGGTCCTGCTGA
GCACTGACGGCAGGTGCAGCAGCGCTCATCTCTTGCATGTGTATGTGTGT
GTGCGCGCACATGCGTGACCGCGTCTGCAGGCTCTCTGCGAATCCTCTGT
CGGTTGTTATCTTGCAGTTGCTGTGGGCGCTTGTGTTGGTAGCCTGTTGG
CACCATTCGCATGAGCGGCGGTGCCCCAATGAACAATCTTGCGGCAGCGT
GCTTAAGTTTGTTGAGCGCTGCTGCCACAGCCTCATCTCATGTTGTCTCT
CTTTCCACTGTGCGCTTGTTGTTCTGCAGGCGGAGATGACACCTCGCCAA
TCCAAGGTCAAACAGCAGAAGGCGCTTGCAGAGCAGGTGAACATTGCCTT
CGACTCGCAAGTAGCATGTGTTAGCTAGTAGTTCAAGCATCTTCCTCGTC
AAGCAGTGCGCTTCTCAACGACTAGAAGTATATGTGATCATCAGCCCCGA
ACAAAGTGTGTAGGCTGATTCATGCTTTTGATGGTGCCCCCCGCGGCACA
ACTGCAAGTGGTATGCAACGCACGATGCCATGACCCCCTTTTGCACATGT
GCTCAGGGCCCCAAGGACTGCACCACTTGCATCACACAGGTGGCGTGCAT
GCTCTCTCATTGCCATTCACTTTGAAGCCCCCTTGCAACTTGTGCGTGCT
TGTAAACGTATAACTGCGCAACAATGTTTGCAATCTGCGCATGCTGCGCC
ACTCCAGCCCTTCGCCACATACACTATAGATCCTCCTTTGCGCCTCTGCC
ACTTTGAGTGCTCGAATTCGCCACAATCTCACTCACGCTGTCGCCTCCGC
CACCTCTGCCTCTACTTCACAGAGGGAGCAGGCACGCAAACGCGCCGCCC
CCGCCCCCGTCTTCACCGTCGCCGCCGCCACGGGCCCGTTTGAGCCGCGC
TACGCGTGCGTCGTGACGCCGAGCAACAACGCCCACGCCGCCGCAGCCGC
TTACGGCGATTACGGCAGTTACAACACCAGCAGCAAGCGCACCCGGACGG
CGTCCGCGCCCATGGCGGTGCCCTGCACATCGGCCGCCGTCGCGTTTCGC
TCGCGCGCGCCCGTCGCCGCGGCGGTCGCAGTCGCCGTGAGTGCGCAGAT
CTAGGGCTAGGGCTAGCGCACCACGGCAGTGCTCGACCGCTTGCTGCTTA
GCGGTACTGCGTGCGCGCCCGTGGTACAGCTGAGCACTGCTGCTGCTCGC
TCATATTAAAAAAAAAATCATGATCGCCCCCCACACCTTACAAGCACCTG
TGAAGACCCCCCCCCACCCCCCCCTCGGCACACGCTTCTGTAAGGGCGCA
ACAACTGTCGCGCTCGAGGCTTCGGACACCCGATCTACAACATGTAGTAC
GCAGAGCAGCCGCCGCCCCCCTTTACAGCACAGCACACCTCACCTGCCCC
CAACTTCAAGTTAGTGACCCCCCACCTCAAGTTAGTGACTCTCCGGCGGT
TGAGCGCTTCCTCCTAGGCGCCCATTCGACTGCCCCTCGAAATCATCTGG
CCGCCACGCTGCCAGCTGACGGTGCTGCAACAGCCATCAGTGTTCTGGTT
CCCGATACAGCGAAACTCTTCGCTGCCCCCCCCCCCCCCCCCCCCCC
back to top

Coding sequence (CDS) from alignment at Contig_255:38838..43984-

>mRNA_18275 ID=mRNA_18275|Name=jgi.p|Trimin1|354490|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1134bp|location=Sequence derived from alignment at Contig_255:38838..43984- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGGGCATACGAAAACAGGAGACCATGGAGCACATCGACTTGTA
CCACACCCTGGGCAAGGGCATGAGCGGACGTCGCGTTGCGGTTACAACTG
TGTTGTTGCGCGTCATCGCCGACGCCCCCCTCGAGTACACAGCAGCGCTC
GTACTGGAGTTGGCGGGCGGCGGAGAGCTGTTTGACTACATCATGCACAC
GGGCAGGCTGTCGGAGCTAACGGCGCGGACATACTTTGCTCAGCTGTGCA
GTGCCATGGTCTGCTGCCACGCCTTGGGAGTAGCTCATCGCGACCTGAAG
CTCGAAAACATCCTGCTCGATGACAACTTCAAGTTGAAGTTGGCCGACTT
TGGCCTTGCGCGCTTCATGTGCGAGCCTCCGTCCATCTCAGGCGGCTGCA
GCGCAAAGTGCGGAACCGCGAGCTACATGGCGCCTGAGGTGTACGCCGAA
AAGCGTGGGTGTGATGCAACCAAGGCCGATGTGTGGGCAGCAGCCGTCCT
GCTATTCATCATGGTCGCCGGACACCCGCCCTTCACCGTCGCTGACAGAT
CCGACCCCCTGTTCAAGACCTTGGACTACGGTCAAAGGGTCAGGGACATG
GCTAAGGCGTGCATGGACACCGACCGCAGATCTTTCTGGAACGCCCACCT
CCAAGTGACGCCTGCCTTCCCACCGGCAGCGCGCGTCCTCATAGACAGCC
TCTTCGTAGAAGACCCTGCGCAGCGCATGTCCTTCGCGCAGCTGGCGCAG
CACCCGTGGGTGCTGGGACCGACCCTGGCTGCAACGTCGCTGCAGGCGGA
GATGACACCTCGCCAATCCAAGGTCAAACAGCAGAAGGCGCTTGCAGAGC
AGAGGGAGCAGGCACGCAAACGCGCCGCCCCCGCCCCCGTCTTCACCGTC
GCCGCCGCCACGGGCCCGTTTGAGCCGCGCTACGCGTGCGTCGTGACGCC
GAGCAACAACGCCCACGCCGCCGCAGCCGCTTACGGCGATTACGGCAGTT
ACAACACCAGCAGCAAGCGCACCCGGACGGCGTCCGCGCCCATGGCGGTG
CCCTGCACATCGGCCGCCGTCGCGTTTCGCTCGCGCGCGCCCGTCGCCGC
GGCGGTCGCAGTCGCCGTGAGTGCGCAGATCTAG
back to top