mRNA_18267 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354363
Unique Name	mRNA_18267
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354363 vs. uniprot
Match: A0A835YZP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP5_9STRA)

HSP 1 Score: 304 bits (778), Expect = 2.940e-103
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 3

Query:  117 MASKLSEADSGSSSADTEGAALPAAASENAATTEAEVQHREPLVKVTHLSESHAGTSLIARVVALSGCCYVWVGEGDWAGSGKGGRLPEQGAVAAAVQTPYEAMPVVTELLGEEGGFGGGMAQRLAKRTGQMVYASVNVSNAAAESLPMIERRVLAVLQGAG 602
            MASKLSEADSGSSSADTEGAALPAAASENAATTEAEVQHREPLVKVTHLSESHAGTSLIARVVALSGCCYVWVGEGDWAGSGKGGRLPEQGAVAAAVQTPYEAMPVVTELLGEEGGFGGGMAQRLAKRTGQMVYASVNVSNAAAESLPMIERRVLAVLQGAG
Sbjct:    1 MASKLSEADSGSSSADTEGAALPAAASENAATTEAEVQHREPLVKVTHLSESHAGTSLIARVVALSGCCYVWVGEGDWAGSGKGGRLPEQGAVAAAVQTPYEAMPVVTELLGEEGGFGGGMAQRLAKRTGQMVYASVNVSNAAAESLPMIERRVLAVLQGAG 162

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BLAST of jgi.p|Trimin1|354363 vs. uniprot
Match: UPI0014031681 (proteasome assembly chaperone 4 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014031681)

HSP 1 Score: 58.2 bits (139), Expect = 4.500e-7
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 3

Query:  303 VALSGCCYVWVGE-GDWAGSGKGGRLPEQGAVAAAVQTPYEAMPVVTELLGEEG-GFGGGMAQRLAKRTGQMVYASVNVSNAAAESLPMIERRV 578
            ++L G   +W+GE GD          P   A+A A+ T  + MP+ + LLG+   GF   +AQRLAKRTG+ V+ASVN+      SL ++E+++
Sbjct:   77 ISLPGSLLLWLGERGD----------PRLSALAVALATRLDTMPIGSSLLGDHAEGFSCALAQRLAKRTGKQVFASVNLPGLDPASLALLEQQL 160

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BLAST of jgi.p|Trimin1|354363 vs. uniprot
Match: UPI000D1CF3A4 (proteasome assembly chaperone 4-like n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CF3A4)

HSP 1 Score: 55.1 bits (131), Expect = 2.170e-6
Identity = 40/120 (33.33%), Postives = 60/120 (50.00%), Query Frame = 3

Query:  249 KVTHLSESHAGTSLIARVVALSGCCYVWVGEGDWAGSGKGGRLPEQGAVAAAVQTPYEAMPVVTELLGEEGG--FGGGMAQRLAKRTGQMVYASVNVSNAAAESLPMIERRVLAVLQGAG 602
            ++T  S+     S   +++ L    Y+W+G           RL   G + A++ TPY+ MP ++ L+G  G    GGG+A+RLA RTG  V  + N+ + A       ERRVL  LQ  G
Sbjct:    5 RLTCFSDEAHDASFHFQILCLDKQLYIWIGCNS-------ARL---GHLFASIPTPYDKMPSLSALIGGGGANSAGGGIARRLALRTGYSVVLAANLPSNAPSLEGFAERRVLKELQDLG 114

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BLAST of jgi.p|Trimin1|354363 vs. uniprot
Match: A0A1B6KZT8_9HEMI (Uncharacterized protein n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KZT8_9HEMI)

HSP 1 Score: 51.2 bits (121), Expect = 7.510e-5
Identity = 29/106 (27.36%), Postives = 55/106 (51.89%), Query Frame = 3

Query:  219 AEVQHREPLVKVTHLSESHAGTSLIARVVALSGCCYVWVGEGDWAGSGKGGRLPEQGAVAAAVQTPYEAMPVVTELLGEEGG-FGGGMAQRLAKRTGQMVYASVNV 533
            A+++  +  +     SE+   T ++  V+ L    ++W+G G         + P    +  A++TPYE++P+ T++LG        G+A +LAKR  + V+ SVN+
Sbjct:   11 AQIESTDSRLSTHSFSENIGSTVVMFSVLKLKDSAFMWIGSG---------QEPRLVNMCVAMKTPYESLPLTTQVLGSRSDEMSPGLASQLAKRLSKPVFVSVNI 107

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354363 vs. uniprot

BLAST of jgi.p|Trimin1|354363 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A835YZP5_9STRA	2.940e-103	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
UPI0014031681	4.500e-7	38.30	proteasome assembly chaperone 4 n=1 Tax=Petromyzon...	[more]
UPI000D1CF3A4	2.170e-6	33.33	proteasome assembly chaperone 4-like n=2 Tax=Selag...	[more]
A0A1B6KZT8_9HEMI	7.510e-5	27.36	Uncharacterized protein n=1 Tax=Graphocephala atro...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_234	contig	Contig_234:133028..137598 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354363\|estExt_Genemark1.C_Ctg_2340017
Description	Source PGD
COG category	S
Max annot lvl	121069\|Pythiales
EggNOG OGs	290C6@1\|root,2RX6E@2759\|Eukaryota,1MHAK@121069\|Pythiales
Evalue	4.45e-06
Seed ortholog	65071.PYU1_T004963
Hectar predicted targeting category	other localisation
TranscriptId	354685
Track	FilteredModels1
ProteinId	354363

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354363	gene_18267	Tribonema minus UTEX_B_3156	gene	Contig_234 133028..137598 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354363	Trimin1\|354363\|estExt_Genemark1.C_Ctg_2340017	Tribonema minus UTEX_B_3156	polypeptide	Contig_234 133144..137545 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_18267_1	exon_18267_1	Tribonema minus UTEX_B_3156	exon	Contig_234 133028..133298 +
exon_18267_2	exon_18267_2	Tribonema minus UTEX_B_3156	exon	Contig_234 133881..134064 +
exon_18267_3	exon_18267_3	Tribonema minus UTEX_B_3156	exon	Contig_234 135740..135793 +
exon_18267_4	exon_18267_4	Tribonema minus UTEX_B_3156	exon	Contig_234 137450..137598 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_18267	UTR5_18267	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_234 133028..133143 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_18267	CDS_18267	Tribonema minus UTEX_B_3156	CDS	Contig_234 133144..133298 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_18267	UTR3_18267	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_234 137546..137598 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_234:133028..137598+
coding sequence from alignment at Contig_234:133028..137598+

spliced messenger RNA

>mRNA_18267 ID=mRNA_18267|Name=jgi.p|Trimin1|354363|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=658bp|location=Sequence derived from alignment at Contig_234:133028..137598+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGACCAGCGCGTCTCCCACATGCATACCATCTCTACGGCACCAAAACTGT
ATTGAGCAAAAGTGAGTGTAGGCAGCTACACAGCAGTTTGTCCCGCCGCG
GCGGCTACGGAAGATCATGGCGTCCAAACTGTCAGAGGCTGACAGTGGAA
GTAGCTCTGCGGATACAGAAGGAGCAGCGCTGCCTGCAGCGGCATCAGAG
AATGCGGCTACGACAGAGGCAGAGGTGCAACATCGAGAACCACTGGTGAA
GGTCACACACCTGTCAGAAAGCCACGCAGGCACCTCCCTCATTGCCAGGG
TCGTAGCCCTCAGCGGCTGCTGTTACGTGTGGGTGGGGGAGGGGGACTGG
GCGGGCAGCGGGAAAGGGGGGCGGCTGCCGGAGCAAGGCGCCGTCGCCGC
CGCGGTGCAGACGCCCTACGAAGCCATGCCGGTGGTCACAGAGCTGCTGG
GGGAGGAGGGCGGTTTCGGCGGCGGCATGGCGCAGCGGTTGGCCAAGAGG
ACTGGGCAGATGGTGTACGCGAGCGTGAACGTGTCGAACGCGGCCGCCGA
GTCGCTGCCCATGATCGAGCGGAGAGTGCTGGCAGTCCTGCAAGGGGCCG
GCTAGCAGCGCTCAGCAAAGCAATCATACATTATGCATCGTTCAAGACGA
AGTGCGCG

protein sequence of jgi.p|Trimin1|354363

>Trimin1|354363|estExt_Genemark1.C_Ctg_2340017 ID=Trimin1|354363|estExt_Genemark1.C_Ctg_2340017|Name=jgi.p|Trimin1|354363|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp
MASKLSEADSGSSSADTEGAALPAAASENAATTEAEVQHREPLVKVTHLS
ESHAGTSLIARVVALSGCCYVWVGEGDWAGSGKGGRLPEQGAVAAAVQTP
YEAMPVVTELLGEEGGFGGGMAQRLAKRTGQMVYASVNVSNAAAESLPMI
ERRVLAVLQGAG*

mRNA from alignment at Contig_234:133028..137598+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_18267 ID=mRNA_18267|Name=jgi.p|Trimin1|354363|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4571bp|location=Sequence derived from alignment at Contig_234:133028..137598+ (Tribonema minus UTEX_B_3156 )
AGACCAGCGCGTCTCCCACATGCATACCATCTCTACGGCACCAAAACTGT
ATTGAGCAAAAGTGAGTGTAGGCAGCTACACAGCAGTTTGTCCCGCCGCG
GCGGCTACGGAAGATCATGGCGTCCAAACTGTCAGAGGCTGACAGTGGAA
GTAGCTCTGCGGATACAGAAGGAGCAGCGCTGCCTGCAGCGGCATCAGAG
AATGCGGCTACGACAGAGGCAGAGGTGCAACATCGAGAACCACTGGTGAA
GGTCACACACCTGTCAGAAAGGTGCGGCGATTCTGGTCACAGCTGAAGCT
GTGCGACAATCCAATGACACATTGCATGACCTTAAATCAGGAGGCATGTG
CATACTATGTCCACAAGTGTACATCGTTAAGCGCTGCGCACAATGTTGAT
GCTTGACTACTCAAGTGTACATGAACAGTAAAGTTGAAGCATTCATCACC
GCATGCGCTTCTCACAGCGTGCTCTTCTCACTGTAACCTTCCCTCACTGC
CACAGCTATATCACTTGCAACAGTGTCCCTTTCTCACACACACGCGCGCG
CATGCGTGCGCCGCCAGCGCACACCCGCCCCGCCGCACGCCTTCCGCACT
GCCAAATCTCCGGCGCTTGCAGCCACACACCTCCCCCGCGCCGCTTGCGC
CCGCGGTCGCACACTTTCCGCTCATCGTCATGGCCATACATACCATACAT
ACCATACATACCCTCCTGCCGAGCCGCGCCCCGCACCGCAGCCACGCAGG
CACCTCGCTCATCGCCCGCGTCATCGCCCTCAACGGCTGCTGTTACGCGG
CCATACCTGCCATACTTACCTACCCTCTTGCCGCGCCGCGCCCCGCGCCG
CAGCCACGCAGGCACCTCCCTCATTGCCAGGGTCGTAGCCCTCAGCGGCT
GCTGTTACGTGTGGGTGGGGGAGGGGGACTGGGCGGGCAGCGGGAAAGGG
GGGCGGCTGCCGGAGCAAGGCGCCGTCGCCGCCGCGGTGCAGACGCCCTA
CGAAGCCATGCCGGTGGTCACAGAGCTGCTGGGGGAGGTGAGTGCGTACG
CTGAGCGCTGCTGTGTGTGTGGGGGGGTATGTATGCATGCGTGCTGCACG
CAGACGCCGTGCGAAGCCATGCCGGTGGTGGCAGAGCTGCTGGGGGAGGT
GAGCCAGTACGCTGAGCACTGCTGTGTGGGGGGTATGTAGGCATGCGTGC
TGCGCTCAGGCGCCGTGCAAAGCCGCAACGGCAATCACGGAGCTGCTGGG
GGAGGTGAGCAAGTGGCCCGGATGAGCGCTGCTGTGTGGGGGGGGGGGTA
TGTATGCATGCGTGCTGCACGTGTTCAAGGTGCTGGCGGAGTAAGGGGGG
GGTGCCGGAGCACTGCTGCTTGCAGACGCGGGTATGCACGTACGAAGCAC
GCGCGGATGGTAATGGAGCTACTGGGGGAGGTGAACGAGTACGCCGGTGA
GCACTGCCGTTAGGGGTAGGCATGTACGTATGAAGCACGTGGCGGTGTTC
GCTGAGTCACGCTGTCCGCCGATTCAGCACTGCTGAATGTCTGTGCATGT
GTGTGTAGCGTGTATGCGTGCTGGTCATTACAGTGGTGAGGGATGTGAGC
GAGTTCACAACAGTTGAGCATTGCCGCATGTAATGGGTAGGTGCAGGTAC
ATTCGAAGCATATGTCAGTTGAGGCATGTGACAGCGATCACGAAGCTGGT
GAGGGAAGCGAGCGAGCACGCCAGTTGAGCGCTGCTGCACACGGGAGGGT
ATGCATGCATGCGTGGCGCACGCATTTGTGCAGAGGTACGTTGGCGATGT
CATTCAGAAGTGATCGTCAATGCGCACCGAGACACTTTCAAGGTGTTCAC
CAGGACATAGGCTTCTGGTAGCAAGCCGAATATCCATCATCTGTGTCTTC
TCGCGCCCTGAGTGAGAACTGACAAAAAGTAACTGTGCAGCGCCTGCCGT
TGGTCATGGCGCTGCTGAGCGAGCCCGCCGGATGAGCGCTGCCGCATGTG
GGCAGGTAGGTATGTTCACACGAAGCGCATGTCGCTGATGGGACGCTCGC
CAACGCTCCGCGCATGTTGTGCGGCAGCGAAACTTGATCATCTGCTGCTG
CATCAGGTGCAACATGCAGTGTGACAGGTACTGTCGGTGGAAGTTACATA
GGTGAGGATCTTCTCCGCCATCGCCGCGAGTACCTGCGTGTACGCATTGC
GGTGAGATGCACCTGCGTCCGTGCGCTGATTGGGCGCCCCTGACATGCCC
CAGGTGATGCGCGAGGCGCTGACACTTCGGGTCTGAGTGACGCAAGGGGG
GGTGCTGCGTTCGTGTGCTGATTGGACGCTCCCGAAATGTCCCACGTCAC
GCAGGAGGGCGGTTTCGGCCGCTGAGCGCTGCCGCATGTGGGCAGGCACG
GTACGTGTGCTAACGTGAAAGCGCGGGTCGTCGATGGGACGCGCGCCCAC
GCTCCACGCGTCTTTGCGCTGCAGCGGTACCGCCAGCGTTGCAAGTGCAT
GCTGATCGAGAATTAATAGAAAGTACATGCGTGCACCTGGCTGCCAGAGA
GGTGCTGTGTGTGTATGCTGAGCGGATGCTCCCGAAATGCCCCACGTCGC
GCAGGAGAGGGGCGTTTGGCGTACATGTACACATCGCCGCAAGCGGAGGT
GCTGCGTCCGTGCTGCGTCCGTGTGCTGACAAGTTGCTTACGAAATGTCC
CACGTCACGCAGGAGGGCGGTTTCGGCGGCGGCATGGCGCAGCGGTTGGC
CAAGAGGACTGGGCAGGTGAGGCTCGCCGGTCGTCCCGAACGTGAAATCG
TCAGAACCATCTCACCCCAACCCTAACCCGAAGTTGTGGAGCTGTGCTCG
TCATGTGACTTCTTGCCTAGATTGCCCGCGGCGCTTGTTTGAAGTGGCCC
CACGGCGCTTGCATGGCCGCGGCGCGTCACAAGTGCAATGTTGAAGTTTA
CGGCATGGCGCAGCGGCTGGCCAAGAGGACAGGGCAGGTGAGGCGTGGGT
TGGGGTTGGAGGCAGGGCTAGGGTTAGGGTTAGTGGTGTCGAGCGTCCAG
GTGCAAACATCTTCAGGGGGTGGAGTTGTGCCTGTCATACGCAACAAACC
CAAAATCCAGCCCTGATCCTATGACTCTAACCCTAAGAAATAGGTGCCCG
CACAACTGGTGCGCCTTCCTCTGGCCCCCACAGTGCTTGCCACAGGAACT
CGGCGAAGCGAACAGAGTCCAGTGCTGCACAGGGTTGTCGTGAAGCGGCA
TATTAGCGTGCATTAGGATGATAGATGTGTGTTGGCAGCACGTAGCACGC
CTTGAGGTGGCCAGGGCTCAATTGGAGAGTTGTGCTCGTATTTGTCAACA
GTCACCTCAAGTTGAATGGCAGCAGCGCTCAGCTGCATTTGTGCTTGTGT
TCGCCTAATGATCAGAAACCGATCTACATGCTTTAAGGAAGGCGTACAGG
CGCCGATAGGCCTGGGCGCACAGGGTTAGGGTTAGGACTAGGGTTAGGGC
TAGGGTTCAGGTCATGTTCAGGGTCAGGGTTTGCGCAGCGAGCTCTGAGG
CGATGATCTTCGGCAAGCGTACTGCGGCGCCATTGCCTAGGGTTAGGGTT
GAGCTCGGCTTAGGGTCAGCTGAAGCAGCGCTTCGAGAGAGAGCGATTGG
CCAGCGTTGGAGCTGAGGCCAAGATTGTGAACTGAAGGCCTGCATTGCGA
TGCCAATTATGATTTGGACGTGAAGCTGCGCAGTAAGATTTGCAGACGTG
CCCGCACGCATGTTTCATGTTTCGGCGCTGCAGCTTCGTGCTCTGCGCCA
TCACGCGGCCGGCTCACGGGCGCAGTGGCGGCATACCGCAATTCCACACC
ATGATCCTTGCGTTGTGTCTAGCACCATGCATGAAGCATGGCGCCACACA
TGAAGTGCAGTTCCACGTGGCCACGGCACGGCACAACTTGAAGTGCAACT
TTGGAGTTGCCTTAACTCTCTAGCGAGCATTGCTCTCAGAGGCAGCACCT
GTCCGCAGCGGCACCTTTGCATAGCAACTGAGCGAGAATGCGAGTAGGCG
ACGCATCCGCTGCGTGTTCTTCCGTGCAAACATAGGCAAGCTGGGAGGCC
AGGATTGGGGTTAAGGGTTAGGGTTAGGGTTACGGTTGGGCGTGCCGCCA
CTGGTGCCCAACACCCACTGCGCAGCCCCACGTGCAGCGTCAATACCTGC
TGCGCTGCCCGCACTCGGACCCGCGCGTACAGCGCTGTGAAGGAATGCGG
CAGCACCACATCTCAATTAGAAAAGGGCTGCCAGTGCGCAAGTTCAAGCC
AATCATTTAACCTAATCACACACATCCGACTCCACGATGTTCTCAATCTT
GCAGCATCCAACTTGCAGCGACGCTCCTGTACATGCACTGTGCTCCCTCT
CTGCCTGCTGCGCGCTACGCAGATGGTGTACGCGAGCGTGAACGTGTCGA
ACGCGGCCGCCGAGTCGCTGCCCATGATCGAGCGGAGAGTGCTGGCAGTC
CTGCAAGGGGCCGGCTAGCAGCGCTCAGCAAAGCAATCATACATTATGCA
TCGTTCAAGACGAAGTGCGCG

Coding sequence (CDS) from alignment at Contig_234:133028..137598+

>mRNA_18267 ID=mRNA_18267|Name=jgi.p|Trimin1|354363|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_234:133028..137598+ (Tribonema minus UTEX_B_3156 )
ATGGCGTCCAAACTGTCAGAGGCTGACAGTGGAAGTAGCTCTGCGGATAC
AGAAGGAGCAGCGCTGCCTGCAGCGGCATCAGAGAATGCGGCTACGACAG
AGGCAGAGGTGCAACATCGAGAACCACTGGTGAAGGTCACACACCTGTCA
GAAAGCCACGCAGGCACCTCCCTCATTGCCAGGGTCGTAGCCCTCAGCGG
CTGCTGTTACGTGTGGGTGGGGGAGGGGGACTGGGCGGGCAGCGGGAAAG
GGGGGCGGCTGCCGGAGCAAGGCGCCGTCGCCGCCGCGGTGCAGACGCCC
TACGAAGCCATGCCGGTGGTCACAGAGCTGCTGGGGGAGGAGGGCGGTTT
CGGCGGCGGCATGGCGCAGCGGTTGGCCAAGAGGACTGGGCAGATGGTGT
ACGCGAGCGTGAACGTGTCGAACGCGGCCGCCGAGTCGCTGCCCATGATC
GAGCGGAGAGTGCTGGCAGTCCTGCAAGGGGCCGGCTAG