mRNA_18167 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Match: A0A835ZCC1_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC1_9STRA) HSP 1 Score: 234 bits (598), Expect = 4.540e-78 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 Query: 4 MLNVQRLSENATLPTRAHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 360 MLNVQRLSENATLPTRAHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE Sbjct: 1 MLNVQRLSENATLPTRAHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 119
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Match: A0A835YWU8_9STRA (dUTPase domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWU8_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.200e-37 Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 1 Query: 10 NVQRLSENATLPTRAHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLI 327 NV+RLS ATLPTRA AVG DLYSAH AVI AH+NAL+ TDL +QVPE+ YGR+T +R L LKNKLEVYAG+VD + +V +VLFNH+D D + +GDC+AQLI Sbjct: 268 NVKRLSSRATLPTRAVGAVGADLYSAHDAVIAAHDNALIHTDLRIQVPENTYGRVTAQRHLPLKNKLEVYAGVVDAGNCDDVCIVLFNHSDADYVLKQGDCVAQLI 373
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Match: A0A835YZ59_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ59_9STRA) HSP 1 Score: 127 bits (320), Expect = 9.880e-36 Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 1 Query: 4 MLNVQRLSENATLPTR-AHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 360 M+ V+RLS NA LPT+ A ++V LYSAH +P+H ALV+TDL M+VP S +GRI NK L + N+++VY+ I++ H+GNVGVVL+NH D D V G C+AQL++EQ VI Q++E Sbjct: 1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVRE 118
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Match: A0A835ZE92_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE92_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.880e-33 Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 4 MLNVQRLSENATLPTR-AHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 360 ML V+RLS NA PT+ +V LYSAH+ +PAH+ ALV+TDL +++P S YGRI NK L + N+++VY+ I++ ++ NVG+V++NH D V +GDCIAQLI+ Q VIA I+E Sbjct: 1 MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQE 120
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Match: A0A0L0GAG4_9EUKA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAG4_9EUKA) HSP 1 Score: 122 bits (307), Expect = 3.660e-33 Identity = 59/119 (49.58%), Postives = 86/119 (72.27%), Query Frame = 1 Query: 7 LNVQRLSENATLPTRAHN-AVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 360 + V++LS++AT+P + A GFDL+SAH VIPA A+++TD+S+ +P YGR+ + L K+ ++V AG++DG + GNVGVVLFNHA D V KGD +AQLILE+ V+A+I+E Sbjct: 33 MQVKKLSDDATIPVKGSALAAGFDLFSAHDGVIPAQGKAIMKTDISIAIPAGCYGRVAPRSGLSWKHHIDVGAGVIDGDYRGNVGVVLFNHAQTDYNVAKGDRVAQLILEKYVVAEIEE 151
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Match: A0A2R5GQR2_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQR2_9STRA) HSP 1 Score: 124 bits (310), Expect = 8.920e-33 Identity = 65/120 (54.17%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 4 MLNVQRLSENATLPTRAH-NAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 360 M+ V +LSE AT+PTR A G DLY+AH AVIPA LV+TDL+MQVP YGR+ + L K ++V AG++D + GNVGVVLFNHA ED+ V GD IAQL+LE+V +A ++E Sbjct: 12 MVLVSKLSEKATVPTRGSAEAAGLDLYAAHDAVIPAAGKGLVKTDLAMQVPLGTYGRVAPRSGLAWKKHVDVGAGVIDRDYRGNVGVVLFNHAQEDLEVKVGDRIAQLVLEKVSMAPVRE 131
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Match: A4S9G9_OSTLU (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S9G9_OSTLU) HSP 1 Score: 119 bits (298), Expect = 5.350e-32 Identity = 60/119 (50.42%), Postives = 82/119 (68.91%), Query Frame = 1 Query: 7 LNVQRLSENATLPTR-AHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 360 L V+RLS++AT+PTR + A G+DL SAH V+PA LV+TDLS+ +P Y R+ + L K ++V AG+VD + GNVGV+LFNH DED V KGD +AQLILEQ++ ++ E Sbjct: 6 LRVKRLSDDATMPTRGSEGAAGYDLASAHDCVVPARGKELVKTDLSIAIPLGTYARVAPRSGLAWKKFIDVGAGVVDYDYRGNVGVILFNHGDEDFEVKKGDRVAQLILEQILTPEVVE 124
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Match: B3RU43_TRIAD (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Trichoplax TaxID=10227 RepID=B3RU43_TRIAD) HSP 1 Score: 119 bits (298), Expect = 5.660e-32 Identity = 58/119 (48.74%), Postives = 85/119 (71.43%), Query Frame = 1 Query: 7 LNVQRLSENATLPTRAH-NAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 360 L ++LSENAT P R A G+DLYSA +VIP H A+++TD+++ VP YGR+ + L +K ++V AG++D + GNVGVVLFNH E+ +V+KG+ IAQLILE+++IA ++E Sbjct: 19 LRFKKLSENATAPKRGSAQAAGYDLYSAEQSVIPPHGKAVIKTDIAIAVPAGCYGRVAPRSGLAVKKHIDVGAGVIDQDYRGNVGVVLFNHGKEEFSVSKGERIAQLILERILIAPLEE 137
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Match: A0A150FWD5_GONPE (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FWD5_GONPE) HSP 1 Score: 115 bits (287), Expect = 4.200e-30 Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 7 LNVQRLSENATLPTRAH-NAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 360 L V++LS NATLP R A G+DL SA V+PA AL++TDL+++VP YGR+ + L +KN ++ AG+VD + GNVGV+LFNH+DED V GD IAQL+LE++ ++E Sbjct: 34 LLVKKLSPNATLPKRGSAGAAGYDLASAEEKVVPARGKALIKTDLAIRVPPGTYGRVAPRSGLAVKNFIDTGAGVVDEDYRGNVGVLLFNHSDEDFVVKMGDRIAQLVLERITTPDVEE 152
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Match: UPI000711A950 (deoxyuridine 5 -triphosphate nucleotidohydrolase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711A950) HSP 1 Score: 114 bits (285), Expect = 4.320e-30 Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 7 LNVQRLSENATLPTRAHN-AVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKE 360 L +++LSENAT P R + G+DL+SA VIPAH ALV TDLS+ +P + YGRI + L LK ++V AG+VD + G +G+VLFN AD D V KGD +AQLILE++ +A I E Sbjct: 6 LYIKKLSENATTPVRGSPYSAGYDLFSAADIVIPAHQKALVPTDLSVAIPHNCYGRIAPRSGLALKKFIDVGAGVVDCDYRGPLGIVLFNFADTDFEVKKGDRVAQLILERICMAPIVE 124 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143438 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18167 ID=mRNA_18167|Name=jgi.p|Trimin1|143438|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_329:14200..14559- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACCATGCTGAACGTCCAACGTCTATCCGAGAACGCTACTCTGCCCACCAGback to top protein sequence of jgi.p|Trimin1|143438 >Trimin1|143438|gw1.329.16.1 ID=Trimin1|143438|gw1.329.16.1|Name=jgi.p|Trimin1|143438|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=120bp TMLNVQRLSENATLPTRAHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVback to top mRNA from alignment at Contig_329:14200..14559- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18167 ID=mRNA_18167|Name=jgi.p|Trimin1|143438|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=360bp|location=Sequence derived from alignment at Contig_329:14200..14559- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_329:14200..14559- >mRNA_18167 ID=mRNA_18167|Name=jgi.p|Trimin1|143438|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=360bp|location=Sequence derived from alignment at Contig_329:14200..14559- (Tribonema minus UTEX_B_3156 )back to top |