mRNA_18140 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A835Z2P4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P4_9STRA) HSP 1 Score: 305 bits (782), Expect = 4.220e-105 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 Query: 1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 462 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV Sbjct: 1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 154
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A836CJC1_9STRA (AAA domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC1_9STRA) HSP 1 Score: 273 bits (698), Expect = 1.260e-91 Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = 1 Query: 1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 462 +D PLSFVQGYQH+MLVGPPGSGKSQ+SN+LAQLYGALCIVADV+ +GVARV EKFPSDFIA YVGQTAPQTRD+LVQSLEKVL IDEAYGLTETGS +KDDSYGHEAVNEIV+FLSTH+GQMIVIAAGYKEEMVKFRTSNVGLARRIPRV Sbjct: 29 LDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 182
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A836CPV8_9STRA (ATPase_AAA_core domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPV8_9STRA) HSP 1 Score: 184 bits (468), Expect = 2.410e-57 Identity = 89/151 (58.94%), Postives = 122/151 (80.79%), Query Frame = 1 Query: 1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRI 453 MD P +F++G+Q+++LVG PGSGK++++N LAQ++ AL IV +V+T G A V EK P+DFI Y+GQTAP+TR +L++S EKVLFIDEAYG+TE K + YG EAVNE+V +LSTH+GQ+IVIAAGY+EEM++F+ +NVGLARR+ Sbjct: 1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITEN----EKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRM 147
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A4R1FV09_9NOCA (SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=2 Tax=Nocardia alba TaxID=225051 RepID=A0A4R1FV09_9NOCA) HSP 1 Score: 110 bits (274), Expect = 4.580e-25 Identity = 59/141 (41.84%), Postives = 88/141 (62.41%), Query Frame = 1 Query: 37 HIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPR 459 H++ G PG+GK+ + ++ +++ AL ++ + V+ + +D IAGYVGQTA TR + Q+L+ VLFIDEAYGL TG +S+ EAVNE+VA + TH G+++VIAAGY +EM ++ N GL R R Sbjct: 635 HMLFTGAPGTGKTTVARLMGRVFVALGLLVKGHVVSTTS-------ADLIAGYVGQTAQATRAKVEQALDGVLFIDEAYGLEATGQ------NSFAREAVNELVAMMDTHRGRLVVIAAGYPDEMAEWVRQNAGLTSRFSR 762
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A1Q3H3E3_9BACT (Uncharacterized protein n=2 Tax=Cytophagales TaxID=768507 RepID=A0A1Q3H3E3_9BACT) HSP 1 Score: 110 bits (274), Expect = 4.710e-25 Identity = 60/138 (43.48%), Postives = 87/138 (63.04%), Query Frame = 1 Query: 37 HIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARR 450 H++ G PG+GK+ + I+ + + AL +V + V E +D +AGYVGQTA +TR+V+ Q+L+ +LFIDEAY LT + G + D YG EAVN ++A + H +++VIAAGY EEM +F SN GL R Sbjct: 640 HLVFTGNPGTGKTTVARIVGKAFKALGVVKKGHVV-------EVQRADLVAGYVGQTAIKTREVIEQALDGILFIDEAYTLTRSSGGGDTTD--YGQEAVNTLLAMMENHRDRLVVIAAGYPEEMQQFIESNPGLQSR 768
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A651H0I3_9ACTN (AAA family ATPase n=2 Tax=Nitriliruptor sp. TaxID=2448056 RepID=A0A651H0I3_9ACTN) HSP 1 Score: 107 bits (268), Expect = 2.210e-24 Identity = 59/152 (38.82%), Postives = 90/152 (59.21%), Query Frame = 1 Query: 4 DKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPR 459 D+ L+ V +H++ G PG+GK+ + ++ ++Y +L VA + V E + +AGYVGQTA + +V+ +L+ VL IDEAY LT GSG ++ +G EAV+ +V + H +++VI AGY EEM F SN GL+ R PR Sbjct: 308 DRGLTSVPTSRHLVFTGNPGTGKTTVARLVGRIYASLGAVASGHVV-------ETDRAGLVAGYVGQTAAKVTEVVTSALDGVLLIDEAYALTR-GSGGAAGGGDFGQEAVDTLVKLMEDHRDRLVVIVAGYPEEMTDFIASNPGLSSRFPR 451
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: UPI0006981059 (AAA family ATPase n=1 Tax=Nitriliruptor alkaliphilus TaxID=427918 RepID=UPI0006981059) HSP 1 Score: 105 bits (262), Expect = 1.340e-23 Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 1 Query: 7 KPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPR 459 + L V G +H++ G PG+GK+ + +LA++Y AL +V+ + V E S +AGYVGQTA +TR+V+ ++L+ VL +DEAY L + S D +G EA++ +V + H +++V+ GY EEM +N GL R PR Sbjct: 289 RGLPVVGGSRHLVFTGNPGTGKTTVARLLAEIYAALGVVSRGHLV-------ETDRSGLVAGYVGQTAERTREVVEEALDGVLLVDEAYTLA-----RGSDDRDFGREAIDTLVKLMEDHRDRLVVVVTGYPEEMADLLAANPGLTSRFPR 427
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A3M2C5V0_9BACT (AAA family ATPase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A3M2C5V0_9BACT) HSP 1 Score: 104 bits (259), Expect = 1.570e-23 Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = 1 Query: 37 HIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARR 450 H++ GPPG+GK+ + ++A+LY A ++ D +R E +D IAGYVGQTA +T DV+ ++ VLFIDEAY LT T D +G EA+ +V + H ++ VI AGY++EM +F SN GL R Sbjct: 170 HLVFTGPPGTGKTTVARLVARLYAATGVIPD-------SRFTEASRADLIAGYVGQTAIKTADVIARARPGVLFIDEAYALTPTS------DVDFGTEAIATLVKAMEDHRDELAVIVAGYEDEMAQFIQSNPGLRSR 294
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A2T1DGZ4_9CYAN (ATPase n=1 Tax=Phormidesmis priestleyi ULC007 TaxID=1920490 RepID=A0A2T1DGZ4_9CYAN) HSP 1 Score: 103 bits (258), Expect = 1.660e-23 Identity = 56/142 (39.44%), Postives = 84/142 (59.15%), Query Frame = 1 Query: 34 QHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPR 459 +H++ G PG+GK+ + I+ ++Y L +++ + + E +D +A Y+GQTAP+T V+ +L VLFIDEAY L G G D +G EA+N ++ + H ++VIAAGYKEEMV+F SN GL R R Sbjct: 151 RHVVFTGNPGTGKTTVARIVGEIYNNLGVLSKGHFI-------EVDRTDLVAEYLGQTAPKTAQVVESALGGVLFIDEAYSLVPEGRG-----DIFGQEAINTLLKMMEDHREDLVVIAAGYKEEMVRFINSNPGLKSRFAR 280
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: F2I4W9_AERUA (Putative stage V sporulation protein K n=4 Tax=Aerococcus urinae TaxID=1376 RepID=F2I4W9_AERUA) HSP 1 Score: 105 bits (262), Expect = 1.850e-23 Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 1 Query: 37 HIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 462 H + +G PG+GK+ + IL +++ I+A + V+R SD +AGYVGQTA +TR+VL +L VLFIDEAY L T +D++G EA+NEI+ F+ H +I++ AGY +EM +F +N GL RIP + Sbjct: 529 HSLFLGNPGTGKTTVARILGEIFYQKGIIAQKKFIE-VSR------SDLVAGYVGQTALKTREVLESALGGVLFIDEAYSLATT-------NDNFGQEAINEILKFMEDHRQDIIIVLAGYTKEMNEFLRTNSGLTSRIPNI 656 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18140 ID=mRNA_18140|Name=jgi.p|Trimin1|181179|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_244:90460..90921- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACAAACCCCTGAGCTTCGTGCAGGGATACCAACACATCATGTTGGTback to top protein sequence of jgi.p|Trimin1|181179 >Trimin1|181179|e_gw1.244.5.1 ID=Trimin1|181179|e_gw1.244.5.1|Name=jgi.p|Trimin1|181179|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVback to top mRNA from alignment at Contig_244:90460..90921- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18140 ID=mRNA_18140|Name=jgi.p|Trimin1|181179|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_244:90460..90921- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_244:90460..90921- >mRNA_18140 ID=mRNA_18140|Name=jgi.p|Trimin1|181179|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=462bp|location=Sequence derived from alignment at Contig_244:90460..90921- (Tribonema minus UTEX_B_3156 )back to top |