mRNA_18140 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181179
Unique NamemRNA_18140
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A835Z2P4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P4_9STRA)

HSP 1 Score: 305 bits (782), Expect = 4.220e-105
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1
Query:    1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 462
            MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV
Sbjct:    1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 154          
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A836CJC1_9STRA (AAA domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC1_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.260e-91
Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = 1
Query:    1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 462
            +D PLSFVQGYQH+MLVGPPGSGKSQ+SN+LAQLYGALCIVADV+  +GVARV EKFPSDFIA YVGQTAPQTRD+LVQSLEKVL IDEAYGLTETGS   +KDDSYGHEAVNEIV+FLSTH+GQMIVIAAGYKEEMVKFRTSNVGLARRIPRV
Sbjct:   29 LDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 182          
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A836CPV8_9STRA (ATPase_AAA_core domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPV8_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.410e-57
Identity = 89/151 (58.94%), Postives = 122/151 (80.79%), Query Frame = 1
Query:    1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRI 453
            MD P +F++G+Q+++LVG PGSGK++++N LAQ++ AL IV +V+T  G A V EK P+DFI  Y+GQTAP+TR +L++S EKVLFIDEAYG+TE       K + YG EAVNE+V +LSTH+GQ+IVIAAGY+EEM++F+ +NVGLARR+
Sbjct:    1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITEN----EKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRM 147          
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A4R1FV09_9NOCA (SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=2 Tax=Nocardia alba TaxID=225051 RepID=A0A4R1FV09_9NOCA)

HSP 1 Score: 110 bits (274), Expect = 4.580e-25
Identity = 59/141 (41.84%), Postives = 88/141 (62.41%), Query Frame = 1
Query:   37 HIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPR 459
            H++  G PG+GK+  + ++ +++ AL ++   + V+  +       +D IAGYVGQTA  TR  + Q+L+ VLFIDEAYGL  TG       +S+  EAVNE+VA + TH G+++VIAAGY +EM ++   N GL  R  R
Sbjct:  635 HMLFTGAPGTGKTTVARLMGRVFVALGLLVKGHVVSTTS-------ADLIAGYVGQTAQATRAKVEQALDGVLFIDEAYGLEATGQ------NSFAREAVNELVAMMDTHRGRLVVIAAGYPDEMAEWVRQNAGLTSRFSR 762          
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A1Q3H3E3_9BACT (Uncharacterized protein n=2 Tax=Cytophagales TaxID=768507 RepID=A0A1Q3H3E3_9BACT)

HSP 1 Score: 110 bits (274), Expect = 4.710e-25
Identity = 60/138 (43.48%), Postives = 87/138 (63.04%), Query Frame = 1
Query:   37 HIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARR 450
            H++  G PG+GK+  + I+ + + AL +V   + V       E   +D +AGYVGQTA +TR+V+ Q+L+ +LFIDEAY LT +  G  + D  YG EAVN ++A +  H  +++VIAAGY EEM +F  SN GL  R
Sbjct:  640 HLVFTGNPGTGKTTVARIVGKAFKALGVVKKGHVV-------EVQRADLVAGYVGQTAIKTREVIEQALDGILFIDEAYTLTRSSGGGDTTD--YGQEAVNTLLAMMENHRDRLVVIAAGYPEEMQQFIESNPGLQSR 768          
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A651H0I3_9ACTN (AAA family ATPase n=2 Tax=Nitriliruptor sp. TaxID=2448056 RepID=A0A651H0I3_9ACTN)

HSP 1 Score: 107 bits (268), Expect = 2.210e-24
Identity = 59/152 (38.82%), Postives = 90/152 (59.21%), Query Frame = 1
Query:    4 DKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPR 459
            D+ L+ V   +H++  G PG+GK+  + ++ ++Y +L  VA  + V       E   +  +AGYVGQTA +  +V+  +L+ VL IDEAY LT  GSG ++    +G EAV+ +V  +  H  +++VI AGY EEM  F  SN GL+ R PR
Sbjct:  308 DRGLTSVPTSRHLVFTGNPGTGKTTVARLVGRIYASLGAVASGHVV-------ETDRAGLVAGYVGQTAAKVTEVVTSALDGVLLIDEAYALTR-GSGGAAGGGDFGQEAVDTLVKLMEDHRDRLVVIVAGYPEEMTDFIASNPGLSSRFPR 451          
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: UPI0006981059 (AAA family ATPase n=1 Tax=Nitriliruptor alkaliphilus TaxID=427918 RepID=UPI0006981059)

HSP 1 Score: 105 bits (262), Expect = 1.340e-23
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    7 KPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPR 459
            + L  V G +H++  G PG+GK+  + +LA++Y AL +V+  + V       E   S  +AGYVGQTA +TR+V+ ++L+ VL +DEAY L      + S D  +G EA++ +V  +  H  +++V+  GY EEM     +N GL  R PR
Sbjct:  289 RGLPVVGGSRHLVFTGNPGTGKTTVARLLAEIYAALGVVSRGHLV-------ETDRSGLVAGYVGQTAERTREVVEEALDGVLLVDEAYTLA-----RGSDDRDFGREAIDTLVKLMEDHRDRLVVVVTGYPEEMADLLAANPGLTSRFPR 427          
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A3M2C5V0_9BACT (AAA family ATPase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A3M2C5V0_9BACT)

HSP 1 Score: 104 bits (259), Expect = 1.570e-23
Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = 1
Query:   37 HIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARR 450
            H++  GPPG+GK+  + ++A+LY A  ++ D       +R  E   +D IAGYVGQTA +T DV+ ++   VLFIDEAY LT T       D  +G EA+  +V  +  H  ++ VI AGY++EM +F  SN GL  R
Sbjct:  170 HLVFTGPPGTGKTTVARLVARLYAATGVIPD-------SRFTEASRADLIAGYVGQTAIKTADVIARARPGVLFIDEAYALTPTS------DVDFGTEAIATLVKAMEDHRDELAVIVAGYEDEMAQFIQSNPGLRSR 294          
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: A0A2T1DGZ4_9CYAN (ATPase n=1 Tax=Phormidesmis priestleyi ULC007 TaxID=1920490 RepID=A0A2T1DGZ4_9CYAN)

HSP 1 Score: 103 bits (258), Expect = 1.660e-23
Identity = 56/142 (39.44%), Postives = 84/142 (59.15%), Query Frame = 1
Query:   34 QHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPR 459
            +H++  G PG+GK+  + I+ ++Y  L +++  + +       E   +D +A Y+GQTAP+T  V+  +L  VLFIDEAY L   G G     D +G EA+N ++  +  H   ++VIAAGYKEEMV+F  SN GL  R  R
Sbjct:  151 RHVVFTGNPGTGKTTVARIVGEIYNNLGVLSKGHFI-------EVDRTDLVAEYLGQTAPKTAQVVESALGGVLFIDEAYSLVPEGRG-----DIFGQEAINTLLKMMEDHREDLVVIAAGYKEEMVRFINSNPGLKSRFAR 280          
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Match: F2I4W9_AERUA (Putative stage V sporulation protein K n=4 Tax=Aerococcus urinae TaxID=1376 RepID=F2I4W9_AERUA)

HSP 1 Score: 105 bits (262), Expect = 1.850e-23
Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   37 HIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 462
            H + +G PG+GK+  + IL +++    I+A    +  V+R      SD +AGYVGQTA +TR+VL  +L  VLFIDEAY L  T       +D++G EA+NEI+ F+  H   +I++ AGY +EM +F  +N GL  RIP +
Sbjct:  529 HSLFLGNPGTGKTTVARILGEIFYQKGIIAQKKFIE-VSR------SDLVAGYVGQTALKTREVLESALGGVLFIDEAYSLATT-------NDNFGQEAINEILKFMEDHRQDIIIVLAGYTKEMNEFLRTNSGLTSRIPNI 656          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181179 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2P4_9STRA4.220e-105100.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CJC1_9STRA1.260e-9187.66AAA domain-containing protein (Fragment) n=2 Tax=T... [more]
A0A836CPV8_9STRA2.410e-5758.94ATPase_AAA_core domain-containing protein (Fragmen... [more]
A0A4R1FV09_9NOCA4.580e-2541.84SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=2 Tax=N... [more]
A0A1Q3H3E3_9BACT4.710e-2543.48Uncharacterized protein n=2 Tax=Cytophagales TaxID... [more]
A0A651H0I3_9ACTN2.210e-2438.82AAA family ATPase n=2 Tax=Nitriliruptor sp. TaxID=... [more]
UPI00069810591.340e-2337.09AAA family ATPase n=1 Tax=Nitriliruptor alkaliphil... [more]
A0A3M2C5V0_9BACT1.570e-2341.30AAA family ATPase n=1 Tax=Gemmatimonadetes bacteri... [more]
A0A2T1DGZ4_9CYAN1.660e-2339.44ATPase n=1 Tax=Phormidesmis priestleyi ULC007 TaxI... [more]
F2I4W9_AERUA1.850e-2341.55Putative stage V sporulation protein K n=4 Tax=Aer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_244contigContig_244:90460..90921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181179|e_gw1.244.5.1
Preferred namespoVK
Descriptionstage V sporulation protein K
COG categoryO
Max annot lvl91061|Bacilli
EggNOG OGsCOG0464@1|root,COG0464@2|Bacteria,1TPQZ@1239|Firmicutes,4HCQK@91061|Bacilli
Evalue3.03e-24
Seed ortholog866775.HMPREF9243_1099
Hectar predicted targeting categoryother localisation
TranscriptId181501
TrackFilteredModels1
ProteinId181179
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181179gene_18140Tribonema minus UTEX_B_3156 geneContig_244 90460..90921 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18140_1exon_18140_1Tribonema minus UTEX_B_3156 exonContig_244 90460..90921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18140CDS_18140Tribonema minus UTEX_B_3156 CDSContig_244 90460..90921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181179Trimin1|181179|e_gw1.244.5.1Tribonema minus UTEX_B_3156 polypeptideContig_244 90460..90921 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18140 ID=mRNA_18140|Name=jgi.p|Trimin1|181179|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_244:90460..90921- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAACCCCTGAGCTTCGTGCAGGGATACCAACACATCATGTTGGT
GGGGCCGCCAGGGAGCGGGAAATCGCAGTTTTCGAACATTCTGGCTCAGC
TCTACGGTGCACTGTGCATCGTCGCAGATGTCAACACTGTGAATGGAGTT
GCTCGTGTCAATGAAAAGTTTCCGTCTGATTTCATTGCAGGGTATGTAGG
TCAAACAGCCCCGCAGACGAGGGACGTGCTCGTGCAGTCATTAGAGAAGG
TGCTTTTTATAGATGAAGCATACGGCTTGACAGAGACAGGATCTGGTAAA
AGCTCAAAGGATGATTCTTATGGTCACGAAGCAGTCAATGAGATTGTAGC
ATTCTTGAGCACGCACGTCGGACAGATGATTGTGATTGCAGCCGGCTACA
AGGAAGAAATGGTAAAGTTCCGCACGAGCAATGTCGGCCTTGCACGACGT
ATCCCGCGCGTT
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protein sequence of jgi.p|Trimin1|181179

>Trimin1|181179|e_gw1.244.5.1 ID=Trimin1|181179|e_gw1.244.5.1|Name=jgi.p|Trimin1|181179|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp
MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGV
ARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGK
SSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARR
IPRV
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mRNA from alignment at Contig_244:90460..90921-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18140 ID=mRNA_18140|Name=jgi.p|Trimin1|181179|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_244:90460..90921- (Tribonema minus UTEX_B_3156 )
ATGGACAAACCCCTGAGCTTCGTGCAGGGATACCAACACATCATGTTGGT GGGGCCGCCAGGGAGCGGGAAATCGCAGTTTTCGAACATTCTGGCTCAGC TCTACGGTGCACTGTGCATCGTCGCAGATGTCAACACTGTGAATGGAGTT GCTCGTGTCAATGAAAAGTTTCCGTCTGATTTCATTGCAGGGTATGTAGG TCAAACAGCCCCGCAGACGAGGGACGTGCTCGTGCAGTCATTAGAGAAGG TGCTTTTTATAGATGAAGCATACGGCTTGACAGAGACAGGATCTGGTAAA AGCTCAAAGGATGATTCTTATGGTCACGAAGCAGTCAATGAGATTGTAGC ATTCTTGAGCACGCACGTCGGACAGATGATTGTGATTGCAGCCGGCTACA AGGAAGAAATGGTAAAGTTCCGCACGAGCAATGTCGGCCTTGCACGACGT ATCCCGCGCGTT
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Coding sequence (CDS) from alignment at Contig_244:90460..90921-

>mRNA_18140 ID=mRNA_18140|Name=jgi.p|Trimin1|181179|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=462bp|location=Sequence derived from alignment at Contig_244:90460..90921- (Tribonema minus UTEX_B_3156 )
ATGGACAAACCCCTGAGCTTCGTGCAGGGATACCAACACATCATGTTGGT
GGGGCCGCCAGGGAGCGGGAAATCGCAGTTTTCGAACATTCTGGCTCAGC
TCTACGGTGCACTGTGCATCGTCGCAGATGTCAACACTGTGAATGGAGTT
GCTCGTGTCAATGAAAAGTTTCCGTCTGATTTCATTGCAGGGTATGTAGG
TCAAACAGCCCCGCAGACGAGGGACGTGCTCGTGCAGTCATTAGAGAAGG
TGCTTTTTATAGATGAAGCATACGGCTTGACAGAGACAGGATCTGGTAAA
AGCTCAAAGGATGATTCTTATGGTCACGAAGCAGTCAATGAGATTGTAGC
ATTCTTGAGCACGCACGTCGGACAGATGATTGTGATTGCAGCCGGCTACA
AGGAAGAAATGGTAAAGTTCCGCACGAGCAATGTCGGCCTTGCACGACGT
ATCCCGCGCGTT
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