mRNA_18132 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154303
Unique NamemRNA_18132
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835Z1F3_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F3_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.210e-68
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1
Query:    1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS 288
            LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS
Sbjct:    1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS 96          
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835Z7H4_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H4_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.760e-60
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1
Query:    1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS 288
            LTLGSTVQWDVSFSFLHPLHTHVNHMQLGP+TAANQWS LPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS
Sbjct:  383 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPITAANQWSSLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS 478          
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.740e-28
Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISG 285
            L +G    W VS   +HPLH HVN MQ G  TA NQW  +PGW+  GDW+DTL+APG   VYI+PER+ G MV+HCH+A H+D +G+ A   I+G
Sbjct:  909 LPIGVAQPWSVSGDDIHPLHVHVNKMQWGADTAGNQWDQVPGWNAPGDWVDTLSAPGISVVYIKPERFLGPMVMHCHIAEHSD-MGLLAVAKITG 1002          
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835ZAX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.490e-26
Identity = 52/95 (54.74%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISG 285
            +T+    QW V  +  HPLH HVNHMQLG +T ANQW   PGWHV GD+IDTL+A   VPV + PER+ G M +HCHV  HAD LG+   + I G
Sbjct:  633 MTVNKPQQWLVIGTDQHPLHIHVNHMQLGDITKANQWDEAPGWHVTGDFIDTLSAKAQVPVRVNPERFIGPMFLHCHVPSHAD-LGVLGVIDIRG 726          
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.050e-26
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   25 WDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAM 273
            W ++ S  HPLH HV+HMQLG V   NQW   P W++ GDW+D+++APG VPVY+RPERY G  V+HCH+A H+D +G+ A M
Sbjct:  789 WQITGSDKHPLHIHVDHMQLGAVGVTNQWPGAPNWNMPGDWVDSISAPGAVPVYMRPERYGGHRVMHCHIAEHSD-MGIMAVM 870          
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835YQ52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ52_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.200e-26
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    7 LGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAI 279
            L    +W V+ SF HP+H HVNHM++  VT  N    +P W+V GDWIDTLA P  V VY+R ER+TGKM++HCH+A H+D LG+T  M I
Sbjct:  683 LDKPQRWTVAGSFQHPVHVHVNHMEIAAVTPDNDIDGIPEWNVVGDWIDTLAVPNGVDVYVRAERFTGKMMIHCHIAQHSD-LGVTKVMNI 772          
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA)

HSP 1 Score: 109 bits (272), Expect = 9.670e-26
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 LGSTVQWDVSFSFLHPLHTHVNHMQLGP-VTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADS 252
            LG   QW +  S LHP H HVNHMQLGP +  AN W  +PGW   GD+IDT++A G +PV++RPER+ G MV+HCH+A H+D+
Sbjct:  653 LGFAQQWTIQGSDLHPFHIHVNHMQLGPTIGPANNWPDVPGWFQPGDYIDTISALGNLPVFMRPERFVGPMVMHCHIAQHSDN 735          
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835YXW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.490e-25
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISG 285
            L L    QW V+ + LHPLH HVNH Q+G VTAANQW+  P W   GD++D+L+A G+V + +RPER++G M++HCH+  HAD  GM A   I G
Sbjct:  313 LELAVPEQWLVTGTDLHPLHVHVNHFQIGKVTAANQWAEAPEWLQEGDYMDSLSAKGSVQLLVRPERFSGVMIIHCHITSHADQ-GMMAVFNIKG 406          
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.710e-23
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGP-VTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISG 285
            LTLG    W VS + +HPLH HVNHMQ+G  VT  NQW  +P W  AGDW+D L+      VY+RP  ++G MV+HCH+A H+D LG+     I+G
Sbjct:  942 LTLGRVQPWSVSGADVHPLHIHVNHMQIGAEVTDDNQWLEVPNWSRAGDWVDVLSQRNGAIVYVRPVTFSGPMVMHCHIAEHSD-LGVIGVAKING 1036          
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835Z8B6_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B6_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.400e-22
Identity = 47/95 (49.47%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISG 285
            LTLG   QW V+ +  HPLH H+     G V+A NQW   P W V GDW+D+L+A G VP+ + PER++G MV+HCH+  HAD  GM A   I G
Sbjct:  398 LTLGVPEQWLVTGTDQHPLHVHI-----GGVSAENQWDDAPDWLVVGDWMDSLSARGRVPILVHPERFSGPMVIHCHITSHADQ-GMMAVFTIKG 486          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1F3_9STRA2.210e-68100.00Plastocyanin-like domain-containing protein (Fragm... [more]
A0A835Z7H4_9STRA1.760e-6097.92Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
A0A836CK08_9STRA6.740e-2853.68Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZAX7_9STRA1.490e-2654.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCB5_9STRA2.050e-2655.42CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YQ52_9STRA5.200e-2653.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZH56_9STRA9.670e-2655.42CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YXW7_9STRA4.490e-2551.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVH6_9STRA6.710e-2350.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8B6_9STRA1.400e-2249.47Plastocyanin-like domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_244contigContig_244:68741..69028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154303|gw1.244.16.1
DescriptionMulticopper oxidase
COG categoryQ
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG2132@1|root,2RBNT@2759|Eukaryota,3841T@33090|Viridiplantae,34MP1@3041|Chlorophyta
Evalue8.26e-12
Seed ortholog41875.XP_007514690.1
Hectar predicted targeting categoryother localisation
TranscriptId154625
TrackFilteredModels1
ProteinId154303
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154303gene_18132Tribonema minus UTEX_B_3156 geneContig_244 68741..69028 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18132_1exon_18132_1Tribonema minus UTEX_B_3156 exonContig_244 68741..69028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18132CDS_18132Tribonema minus UTEX_B_3156 CDSContig_244 68741..69028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154303Trimin1|154303|gw1.244.16.1Tribonema minus UTEX_B_3156 polypeptideContig_244 68741..69028 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18132 ID=mRNA_18132|Name=jgi.p|Trimin1|154303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=288bp|location=Sequence derived from alignment at Contig_244:68741..69028+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCACACTGGGGTCAACGGTGCAGTGGGACGTGTCCTTTTCCTTCCTGCA
CCCGCTGCACACGCACGTGAACCACATGCAGCTCGGCCCCGTCACGGCGG
CAAACCAGTGGTCGTTTCTGCCCGGGTGGCACGTTGCTGGCGACTGGATA
GATACGCTGGCCGCGCCTGGCACTGTACCCGTGTACATACGCCCTGAGCG
GTACACGGGCAAGATGGTGGTGCACTGCCATGTGGCGTACCACGCTGACA
GCCTGGGCATGACGGCTGCCATGGCCATTTCAGGTTCG
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protein sequence of jgi.p|Trimin1|154303

>Trimin1|154303|gw1.244.16.1 ID=Trimin1|154303|gw1.244.16.1|Name=jgi.p|Trimin1|154303|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=96bp
LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWI
DTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS
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mRNA from alignment at Contig_244:68741..69028+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18132 ID=mRNA_18132|Name=jgi.p|Trimin1|154303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=288bp|location=Sequence derived from alignment at Contig_244:68741..69028+ (Tribonema minus UTEX_B_3156 )
CTCACACTGGGGTCAACGGTGCAGTGGGACGTGTCCTTTTCCTTCCTGCA CCCGCTGCACACGCACGTGAACCACATGCAGCTCGGCCCCGTCACGGCGG CAAACCAGTGGTCGTTTCTGCCCGGGTGGCACGTTGCTGGCGACTGGATA GATACGCTGGCCGCGCCTGGCACTGTACCCGTGTACATACGCCCTGAGCG GTACACGGGCAAGATGGTGGTGCACTGCCATGTGGCGTACCACGCTGACA GCCTGGGCATGACGGCTGCCATGGCCATTTCAGGTTCG
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Coding sequence (CDS) from alignment at Contig_244:68741..69028+

>mRNA_18132 ID=mRNA_18132|Name=jgi.p|Trimin1|154303|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=288bp|location=Sequence derived from alignment at Contig_244:68741..69028+ (Tribonema minus UTEX_B_3156 )
CTCACACTGGGGTCAACGGTGCAGTGGGACGTGTCCTTTTCCTTCCTGCA
CCCGCTGCACACGCACGTGAACCACATGCAGCTCGGCCCCGTCACGGCGG
CAAACCAGTGGTCGTTTCTGCCCGGGTGGCACGTTGCTGGCGACTGGATA
GATACGCTGGCCGCGCCTGGCACTGTACCCGTGTACATACGCCCTGAGCG
GTACACGGGCAAGATGGTGGTGCACTGCCATGTGGCGTACCACGCTGACA
GCCTGGGCATGACGGCTGCCATGGCCATTTCAGGTTCG
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