mRNA_18124 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|46490
Unique NamemRNA_18124
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|46490 vs. uniprot
Match: A0A835Z247_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z247_9STRA)

HSP 1 Score: 290 bits (741), Expect = 2.750e-98
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 2 
Query:   53 MAPSCCRATLLLLVAAAAHGFVSITPGAMHRSGSLGVVSDREGSVFDSEGTFSMQELDTDPSLQVTEADMMTCFQTGECEIPQEFEKKMTKAFNQVPYVGTKQTMTVVDGDSEHEEPVPWAGKWSEVDDDIPVEAYQNESDAEFDI 490
            MAPSCCRATLLLLVAAAAHGFVSITPGAMHRSGSLGVVSDREGSVFDSEGTFSMQELDTDPSLQVTEADMMTCFQTGECEIPQEFEKKMTKAFNQVPYVGTKQTMTVVDGDSEHEEPVPWAGKWSEVDDDIPVEAYQNESDAEFDI
Sbjct:    1 MAPSCCRATLLLLVAAAAHGFVSITPGAMHRSGSLGVVSDREGSVFDSEGTFSMQELDTDPSLQVTEADMMTCFQTGECEIPQEFEKKMTKAFNQVPYVGTKQTMTVVDGDSEHEEPVPWAGKWSEVDDDIPVEAYQNESDAEFDI 146
[Close]
BLAST of jgi.p|Trimin1|46490 vs. uniprot
Match: A0A835ZCU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU1_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.560e-31
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 2 
Query:  185 VFDSEGTFSMQELDTDPS-LQVTEADMMTCFQTGECEIPQEFEKKMTKAFNQVPYVGTKQTMTVVDGDSEHEEPVPWAGKWSEVD--DDIPVEAYQNESDAEFDI 490
            VFDSEG+F M  L+ D + + V++ADM  CFQTGECE+PQEFE+ MTKAFNQ+PY+ +KQTMTVVDGDSE+EEP+ WA +W + D   + PV      +  EF I
Sbjct:    2 VFDSEGSFPMSTLNRDAANIGVSDADMRVCFQTGECEVPQEFEQSMTKAFNQMPYMASKQTMTVVDGDSEYEEPINWAAQWIDADLEGNFPVTGGGGAAAEEFSI 106
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|46490 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z247_9STRA2.750e-98100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCU1_9STRA6.560e-3157.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_231contigContig_231:134233..136699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|46490|CE46489_37
Hectar predicted targeting categorysignal peptide
TranscriptId46812
TrackFilteredModels1
ProteinId46490
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|46490gene_18124Tribonema minus UTEX_B_3156 geneContig_231 134233..136699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|46490Trimin1|46490|CE46489_37Tribonema minus UTEX_B_3156 polypeptideContig_231 134321..136647 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18124_4exon_18124_4Tribonema minus UTEX_B_3156 exonContig_231 134233..134402 -
exon_18124_3exon_18124_3Tribonema minus UTEX_B_3156 exonContig_231 135521..135645 -
exon_18124_2exon_18124_2Tribonema minus UTEX_B_3156 exonContig_231 135986..136140 -
exon_18124_1exon_18124_1Tribonema minus UTEX_B_3156 exonContig_231 136569..136699 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18124UTR3_18124Tribonema minus UTEX_B_3156 three_prime_UTRContig_231 134233..134320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18124CDS_18124Tribonema minus UTEX_B_3156 CDSContig_231 136569..136647 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_18124UTR5_18124Tribonema minus UTEX_B_3156 five_prime_UTRContig_231 136648..136699 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18124 ID=mRNA_18124|Name=jgi.p|Trimin1|46490|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=581bp|location=Sequence derived from alignment at Contig_231:134233..136699- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGACCTCAGCTCAAACCCGTTGACACCCACAACAAGCCACCGAAGCTA
TCATGGCGCCTTCCTGCTGTCGCGCGACGCTGCTGCTGTTGGTGGCGGCA
GCTGCGCACGGATTCGTCAGCATAACGCCAGGCGCGATGCACCGCAGCGG
CTCGCTGGGAGTCGTCAGCGACCGGGAGGGCTCGGTGTTTGACAGCGAGG
GAACCTTCTCCATGCAGGAGCTGGACACGGATCCGTCGCTGCAAGTGACA
GAGGCTGACATGATGACATGCTTCCAGACGGGAGAGTGCGAGATACCGCA
GGAGTTCGAGAAGAAGATGACAAAGGCCTTCAACCAGGTGCCGTACGTGG
GGACGAAGCAGACCATGACGGTGGTGGACGGCGACAGCGAGCACGAGGAG
CCCGTGCCGTGGGCCGGCAAGTGGAGCGAGGTCGACGACGACATCCCCGT
GGAGGCGTACCAGAACGAAAGCGACGCCGAGTTCGACATCTGAACTTCCA
AGTTGAATATCTGAACTTCAACTTGAACATCAAAAATCAGCACGAAGTCC
TCCGGCGGTCAGGCGCGCGCCGCCACATGTG
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protein sequence of jgi.p|Trimin1|46490

>Trimin1|46490|CE46489_37 ID=Trimin1|46490|CE46489_37|Name=jgi.p|Trimin1|46490|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
MAPSCCRATLLLLVAAAAHGFVSITPGAMHRSGSLGVVSDREGSVFDSEG
TFSMQELDTDPSLQVTEADMMTCFQTGECEIPQEFEKKMTKAFNQVPYVG
TKQTMTVVDGDSEHEEPVPWAGKWSEVDDDIPVEAYQNESDAEFDI*
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mRNA from alignment at Contig_231:134233..136699-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18124 ID=mRNA_18124|Name=jgi.p|Trimin1|46490|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2467bp|location=Sequence derived from alignment at Contig_231:134233..136699- (Tribonema minus UTEX_B_3156 )
CCGGACCTCAGCTCAAACCCGTTGACACCCACAACAAGCCACCGAAGCTA
TCATGGCGCCTTCCTGCTGTCGCGCGACGCTGCTGCTGTTGGTGGCGGCA
GCTGCGCACGGATTCGTCAGCATAACGCCAGGTAGGAGAGAAGACCCTCC
TCCAACATGCATCGTTCATGCGCGAGTGCTGTGTGCTCCGCGAGTGCTGA
CGACGCACAACGATGCATGCTGAATGTATCGTGATGCTGGTAGTTCACAG
TGGCTCGCTGGTCGTGTAGCACATGTCATCATCAACTTGAATTAGAACTG
CAGATTGTATAACCCACCGGCATTTACCAGGCTTAGCCACAGTTATGTTA
GAACTGCAGATTGTATCACCCACCGGCATTTACCAGGCTTAGCCACAGTT
ATGAATTTACCGTACTGTGCAGGTCGGTGAGCAGCCGTCCGTTTGCGCAG
CGTTCGTCCTACAGCCGGCGCCGATCTCACACTGTCCTACAGCCGGCGCC
GATCTCACACTGTTCAACCAACGCGACCTTCAAGTTGCTGCGCACCTCCC
TCATGGCAGGCGCGATGCACCGCAGCGGCTCGCTGGGAGTCGTCAGCGAC
CGGGAGGGCTCGGTGTTTGACAGCGAGGGAACCTTCTCCATGCAGGAGCT
GGACACGGATCCGTCGCTGCAAGTGACAGAGGCTGACATGATGACATGCT
TCCAGACGGGAGAGGTAAACCGAGAAAGCACGGATGGGTTTTTAGGACAC
AGTAATTTGCACAATTGTAAGAGCGTAAACCTCAGAGGCACAGCGTTGCA
GCTGAGGTGCAGATTTGGCTACAGCAGGCAGGATTGTGTCAACTTCGCCA
GCTGCACTGTACCAATTCGTTAGACTTTGTGCAACTCTGATGGAGCATTT
AACATTGTGGACAAACAGAGCGCTGCCGCTGTGACGACTGTGTTGTACGC
TTGGGAAATGTGCTCCTGCGCCGAAGAACTTTTTCCTTTGCTTCAACTGC
GCAGCTTCGTGATATAGCCGTGTCGTTCTCGTGGCCTTGGCCTGCGCCGC
ACAGTGCGAGATACCGCAGGAGTTCGAGAAGAAGATGACAAAGGCCTTCA
ACCAGGTGCCGTACGTGGGGACGAAGCAGACCATGACGGTGGTGGACGGC
GACAGCGAGCACGAGGAGCCCGTGCCGTGGTGAGCAGCGCGCAACCAAAT
TCTACTTACCATGTTCAGGCTGAACAGTAGAAGGTACAGGTTCGCGCATC
ATGTGCAATTTCCACTTCAGAGTAGTGGCGCGACGGTGGTGGATGGCGAC
AGCGAGCATGAGGAGCCCGTGCCATGGTGAGCAGCGCTCAACCGAATTCT
GGTATTCAGATGCTGGCTGTATAGTAGAAGGTACAGGTTCATGCATCACC
TGCAATTTGTACTTCAGAGTAGTGGTGAGCAGCGCTCAGCTCAAGTCTGC
TTGCCAGGTTCAGGCTGTACAGTAGAAGGTACAGGTTCACGTATCATGTG
CAATTTTCACTTCAGAGTAATGGCGCTGAGTGACAATGGCACAGCAGGCG
GTTCTGAGAAGCACATGGCGTGCATTTATACGTTGCACTCCTGTGAGCTC
TGGTGTGGCGCGCGTGATAAGCTGCCGGCGGTTCACGGCCGTCGCTGTCG
GAGGAAAGCACTGACTGCGCACCCTGTTTCATTGCCCAGCAGCACGCAGT
GACCACACTGCACTTGCTGACGCGGCGTGACCGTGGCGCCCTCAGCATCG
CATGCCGGCGGCGTGTAGCATCAACACTAGATTCATGTACCATATCAGGG
TCCATCAAAAATTATTCATTGTAAAACTACATCAGGGCCGATTTGGCGAC
AATCAAGTTGTCATACGTTCAGCACGGGCGAGACCTGCGCGGCAGCACAG
GCAGCCTCTACCTAAGTACATGTCTGTGTGACTGGACCGCAGGATCCAGT
GTTGTTTGCTGAGCACTGCTGTGCTGTTGGAAATAAAAAGGCTGAGAATC
AGGATGGCACAAGACCTAGTTAACAGAGGGCTGGCAGGCCAAAATGGCGC
AATGTGTGTGTGGGGGGGGGCGCGTGCTTTGCCGCATGACTTCGCGTTGC
GCACTCTAGTCGCGTGCAACAGCACATGACAGGGGGGACTCGCGCTGAGC
GACTGATGCATGCTTGCCGCAGCAGACTGTCGCTGCTTGCTACAATGCCC
ATGATGCCGTCAACAGCACCCCCTGCCTGGCCACTGACGCCATCGCGCCG
CTCGTGCCGCACTGCGTCCGCACGCATGCGCGCGCTGCGCACAACAGGGC
CGGCAAGTGGAGCGAGGTCGACGACGACATCCCCGTGGAGGCGTACCAGA
ACGAAAGCGACGCCGAGTTCGACATCTGAACTTCCAAGTTGAATATCTGA
ACTTCAACTTGAACATCAAAAATCAGCACGAAGTCCTCCGGCGGTCAGGC
GCGCGCCGCCACATGTG
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Coding sequence (CDS) from alignment at Contig_231:134233..136699-

>mRNA_18124 ID=mRNA_18124|Name=jgi.p|Trimin1|46490|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_231:134233..136699- (Tribonema minus UTEX_B_3156 )
ATGGCGCCTTCCTGCTGTCGCGCGACGCTGCTGCTGTTGGTGGCGGCAGC
TGCGCACGGATTCGTCAGCATAACGCCAGGCGCGATGCACCGCAGCGGCT
CGCTGGGAGTCGTCAGCGACCGGGAGGGCTCGGTGTTTGACAGCGAGGGA
ACCTTCTCCATGCAGGAGCTGGACACGGATCCGTCGCTGCAAGTGACAGA
GGCTGACATGATGACATGCTTCCAGACGGGAGAGTGCGAGATACCGCAGG
AGTTCGAGAAGAAGATGACAAAGGCCTTCAACCAGGTGCCGTACGTGGGG
ACGAAGCAGACCATGACGGTGGTGGACGGCGACAGCGAGCACGAGGAGCC
CGTGCCGTGGGCCGGCAAGTGGAGCGAGGTCGACGACGACATCCCCGTGG
AGGCGTACCAGAACGAAAGCGACGCCGAGTTCGACATCTGA
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