mRNA_18120 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|145871
Unique NamemRNA_18120
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|145871 vs. uniprot
Match: A0A836CFR0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.620e-43
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 QSSWERSFFFDHCLWSVGAADAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLGGG 204
            QSSWERSFFFDHCLWSVGAADAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLGGG
Sbjct:    1 QSSWERSFFFDHCLWSVGAADAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLGGG 68
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BLAST of jgi.p|Trimin1|145871 vs. uniprot
Match: A0A1Y2FNE1_PROLT (Kinesin-like protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FNE1_PROLT)

HSP 1 Score: 81.6 bits (200), Expect = 1.630e-16
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   13 ERSFFFDHCLWSVGAADAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLG 198
            +++F FDH LWSV  AD H+  QAA + RLG   V  AL+GYNC +LAYGQTGSGKTH+M G
Sbjct:   68 QKTFTFDHSLWSVDEADPHFAPQAALHDRLGREFVQHALEGYNCCILAYGQTGSGKTHSMAG 129
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BLAST of jgi.p|Trimin1|145871 vs. uniprot
Match: A0A507BSE4_9FUNG (Nuclear pore complex protein Nup85 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BSE4_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 8.570e-14
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   13 ERSFFFDHCLWSVGAADAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLG 198
            +R+F FDHCLWS      HY  Q   Y  +G  +VD  LQGYN  +LAYGQTG+GKT+TM+G
Sbjct:   69 QRTFTFDHCLWSTAQDRPHYASQQHVYDVVGKELVDHVLQGYNVCVLAYGQTGAGKTYTMMG 130
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BLAST of jgi.p|Trimin1|145871 vs. uniprot
Match: A0A1E3PAT5_WICAA (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) TaxID=683960 RepID=A0A1E3PAT5_WICAA)

HSP 1 Score: 66.6 bits (161), Expect = 2.950e-11
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   13 ERSFFFDHCLWSVGAADAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLG 198
            +++F FDH LWSV   D H+  Q   Y  +G  I++  L GYN  + AYGQTGSGK++TM+G
Sbjct:   64 DKTFTFDHSLWSVSKEDPHFKSQEDTYGLIGKEILEHTLSGYNTCIFAYGQTGSGKSYTMMG 125
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BLAST of jgi.p|Trimin1|145871 vs. uniprot
Match: A0A0S4JFN9_BODSA (Kinesin K39, putative (Fragment) n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JFN9_BODSA)

HSP 1 Score: 65.5 bits (158), Expect = 8.130e-11
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   16 RSFFFDHCLWSVGAA-----DAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLG 198
             +F FDH LWSV  +     D  Y  QA  +   G   V+SAL+GY+C+L AYGQTGSGKT+TMLG
Sbjct:   40 EAFQFDHALWSVPDSQVMFHDNAYATQAQVFELTGKPAVESALEGYHCTLFAYGQTGSGKTYTMLG 105
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BLAST of jgi.p|Trimin1|145871 vs. uniprot
Match: A0A8K1FBC4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBC4_PYTOL)

HSP 1 Score: 64.3 bits (155), Expect = 2.100e-10
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   16 RSFFFDHCLWSVGAADAH-YCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLG 198
              F+FDH  WS   +    +  QA  Y  LG   +DSA QGYNCS+ AYGQT +GKT+TM+G
Sbjct:  111 HDFYFDHRFWSYDRSSGRRFATQATLYEDLGVFAIDSAWQGYNCSIFAYGQTSAGKTYTMMG 172
[Close]
BLAST of jgi.p|Trimin1|145871 vs. uniprot
Match: A0A6A3U1Y7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U1Y7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.920e-10
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   16 RSFFFDHCLWSVGA------ADAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLG 198
            R+F FD C  + G        D     Q   +  +G +++DSA QG+NC++LAYGQTGSGKTHTM+G
Sbjct:   97 RTFHFDRCFGATGGDAADVDEDTERPNQELIFDEIGRSVLDSAFQGFNCTMLAYGQTGSGKTHTMVG 163
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BLAST of jgi.p|Trimin1|145871 vs. uniprot
Match: A0A812YXA1_9DINO (Unc-104 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812YXA1_9DINO)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-9
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   16 RSFFFDHCLWSVGAADAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLG 198
            R+F FD C  S+   D     Q   Y  LGA +V SAL GYNC L AYGQTG+GK+HTM+G
Sbjct:   47 RNFRFDQCFTSLDPQDLSGT-QEKVYSELGADLVTSALDGYNCCLFAYGQTGAGKSHTMMG 106
[Close]
BLAST of jgi.p|Trimin1|145871 vs. uniprot
Match: G4YNI8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YNI8_PHYSP)

HSP 1 Score: 61.6 bits (148), Expect = 1.870e-9
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   16 RSFFFDHCLWSVGAA---------DAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLG 198
            R+F FD C  S   A         D     Q   +  +G +++DSA QG+NC++LAYGQTGSGKTHTM+G
Sbjct:   96 RTFHFDRCFGSALPAGGEAADVDDDTQRPNQELIFDEVGQSVIDSAFQGFNCTMLAYGQTGSGKTHTMVG 165
[Close]
BLAST of jgi.p|Trimin1|145871 vs. uniprot
Match: A0A812I258_9DINO (Klp98A protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812I258_9DINO)

HSP 1 Score: 60.1 bits (144), Expect = 2.100e-9
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   16 RSFFFDHCLWSVGAADAHYCGQAAAYVRLGAAIVDSALQGYNCSLLAYGQTGSGKTHTMLG 198
            R+F FD    S+   DA    Q   Y  LGA +V SAL GYNC L AYGQTG+GK+HTM+G
Sbjct:   47 RNFRFDQSFTSLDPQDASGT-QERVYSELGADLVTSALDGYNCCLFAYGQTGAGKSHTMMG 106
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145871 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFR0_9STRA2.620e-43100.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Y2FNE1_PROLT1.630e-1661.29Kinesin-like protein n=1 Tax=Protomyces lactucae-d... [more]
A0A507BSE4_9FUNG8.570e-1454.84Nuclear pore complex protein Nup85 n=1 Tax=Synchyt... [more]
A0A1E3PAT5_WICAA2.950e-1148.39Kinesin motor domain-containing protein (Fragment)... [more]
A0A0S4JFN9_BODSA8.130e-1153.03Kinesin K39, putative (Fragment) n=1 Tax=Bodo salt... [more]
A0A8K1FBC4_PYTOL2.100e-1050.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3U1Y7_9STRA3.920e-1046.27Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A812YXA1_9DINO1.360e-954.10Unc-104 protein n=1 Tax=Symbiodinium sp. CCMP2592 ... [more]
G4YNI8_PHYSP1.870e-945.71Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A812I258_9DINO2.100e-954.10Klp98A protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_231contigContig_231:112403..112606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|145871|gw1.231.16.1
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006810,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0008289,GO:0008574,GO:0009987,GO:0010970,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030705,GO:0032991,GO:0035091,GO:0042623,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0046907,GO:0046983,GO:0047496,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0072383,GO:0072384,GO:0072386,GO:0099111,GO:0099518,GO:1901981,GO:1902936,GO:1990939
DescriptionBelongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
COG categoryZ
Max annot lvl554915|Amoebozoa
EggNOG OGsCOG5059@1|root,KOG0245@2759|Eukaryota,3XIH9@554915|Amoebozoa
Evalue2.62e-14
Seed ortholog5786.XP_003284556.1
Hectar predicted targeting categoryother localisation
TranscriptId146193
TrackFilteredModels1
ProteinId145871
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145871gene_18120Tribonema minus UTEX_B_3156 geneContig_231 112403..112606 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18120_1exon_18120_1Tribonema minus UTEX_B_3156 exonContig_231 112403..112606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18120CDS_18120Tribonema minus UTEX_B_3156 CDSContig_231 112403..112606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145871Trimin1|145871|gw1.231.16.1Tribonema minus UTEX_B_3156 polypeptideContig_231 112403..112606 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18120 ID=mRNA_18120|Name=jgi.p|Trimin1|145871|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=204bp|location=Sequence derived from alignment at Contig_231:112403..112606- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGTCCTCATGGGAGCGCTCCTTCTTCTTCGACCACTGTCTGTGGAGCGT
CGGCGCCGCGGACGCGCACTACTGCGGCCAGGCGGCGGCGTACGTGCGGC
TCGGCGCCGCCATCGTGGACAGCGCGCTGCAGGGCTACAACTGCAGCCTG
CTCGCGTACGGCCAGACGGGCTCCGGGAAGACGCACACGATGCTCGGGGG
GGGC
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protein sequence of jgi.p|Trimin1|145871

>Trimin1|145871|gw1.231.16.1 ID=Trimin1|145871|gw1.231.16.1|Name=jgi.p|Trimin1|145871|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=68bp
QSSWERSFFFDHCLWSVGAADAHYCGQAAAYVRLGAAIVDSALQGYNCSL
LAYGQTGSGKTHTMLGGG
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mRNA from alignment at Contig_231:112403..112606-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18120 ID=mRNA_18120|Name=jgi.p|Trimin1|145871|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=204bp|location=Sequence derived from alignment at Contig_231:112403..112606- (Tribonema minus UTEX_B_3156 )
CAGTCCTCATGGGAGCGCTCCTTCTTCTTCGACCACTGTCTGTGGAGCGT
CGGCGCCGCGGACGCGCACTACTGCGGCCAGGCGGCGGCGTACGTGCGGC
TCGGCGCCGCCATCGTGGACAGCGCGCTGCAGGGCTACAACTGCAGCCTG
CTCGCGTACGGCCAGACGGGCTCCGGGAAGACGCACACGATGCTCGGGGG
GGGC
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Coding sequence (CDS) from alignment at Contig_231:112403..112606-

>mRNA_18120 ID=mRNA_18120|Name=jgi.p|Trimin1|145871|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=204bp|location=Sequence derived from alignment at Contig_231:112403..112606- (Tribonema minus UTEX_B_3156 )
CAGTCCTCATGGGAGCGCTCCTTCTTCTTCGACCACTGTCTGTGGAGCGT
CGGCGCCGCGGACGCGCACTACTGCGGCCAGGCGGCGGCGTACGTGCGGC
TCGGCGCCGCCATCGTGGACAGCGCGCTGCAGGGCTACAACTGCAGCCTG
CTCGCGTACGGCCAGACGGGCTCCGGGAAGACGCACACGATGCTCGGGGG
GGGC
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