mRNA_18116 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A835Z061_9STRA (Trypsin-like cysteine/serine peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z061_9STRA) HSP 1 Score: 733 bits (1893), Expect = 5.440e-264 Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 1 Query: 1 MNRFAAEGFVFSSFESFAPLPTRSHDKGRARRAAAASGDRPRDGDSSTLNDGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGAASAGPGTRRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGVVSHHVGPASALSTASSSAWLNGDAYNTLTMMNAAKFADIYTWMTEPVPQA 1104 MNRFAAEGFVFSSFESFAPLPTRSHDKGRARRAAAASGDRPRDGDSSTLNDGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGAASAGPGTRRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGVVSHHVGPASALSTASSSAWLNGDAYNTLTMMNAAKFADIYTWMTEPVPQA Sbjct: 1 MNRFAAEGFVFSSFESFAPLPTRSHDKGRARRAAAASGDRPRDGDSSTLNDGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGAASAGPGTRRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGVVSHHVGPASALSTASSSAWLNGDAYNTLTMMNAAKFADIYTWMTEPVPQA 368
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A835Z3D2_9STRA (Trypsin-like cysteine/serine peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3D2_9STRA) HSP 1 Score: 234 bits (596), Expect = 4.640e-68 Identity = 165/394 (41.88%), Postives = 214/394 (54.31%), Query Frame = 1 Query: 1 MNRFAAEGFVFSSFESFA--PLPTR--SHDKGRARRAAAASGDRPRDGDSSTLNDGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGAASAGPG-----------TRRGLTVFGQDDRVEITDPNVT-PYMAIGQL--TFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVF--DQETNDW--VDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAV--TLIDGNAQVMGVVSHHVGPASA---LSTASSSAWLNGDAYNTLTMMNAAKFADIYTWMTEPVPQ 1101 M+RF EGFV S+FESFA PLP S+ G R+ + D S + AVR+T EG+VY+TT LR P L++P AR+ S G + R L +FG D R EITDP PY AIGQL ++ D E ++C+GTLVGTDAVLTA HCV+ D +T ++ + A F P+ L G P+G F ++Y+T +S W+D +D F +D+AVLRL + TG SAFDT+GY MGV D C +P + + GYPG M+ SG CSD +Y CG TNCDWV G+SG D GVVSHH P A ST SS AW D YN+LTMM A K+ D+Y+W+T P+ + Sbjct: 1 MDRFKNEGFVLSAFESFATKPLPRALPSNTTGNKRKMLNNNFDNNFKAASPPRS-----AVRVTREGYVYRTTPLRTPPALNVPDFVPARSLQHHNDGSGGVXXXXXXXXXXSRSLRELLIFGTDSRTEITDPAAQEPYSAIGQLISAYNATD------DEAFLCSGTLVGTDAVLTAGHCVYGLDADTGEYAFMSAAIFNPS-----LIGDDAPFGTFPILYQTTFSEWTDSGAED-FNFDMAVLRLDVAPDTGRSAFDTIGYHMGVSKDACNMP-AVKLSGYPGDKNSTMWASGTCSDI--NYSCGGGTAITNCDWVEGDSGSALFGDAGADTGTLAYGVVSHHTVPGGAGLTASTVSSGAW--PDVYNSLTMMTADKYDDVYSWITSPLAE 372
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A836CCN4_9STRA (Peptidase S1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCN4_9STRA) HSP 1 Score: 156 bits (394), Expect = 1.570e-39 Identity = 123/328 (37.50%), Postives = 161/328 (49.09%), Query Frame = 1 Query: 1 MNRFAAEGFVFSSFESFAPLPTRSHDKGRARRAAAASGDRPRDG-DSSTLNDGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGA---ASAGPG----------------------------------TRRGLTVFGQDDRVEITDPNVT-PYMAIGQLTFD--VADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGD 861 M+RF AEGF F+ E F +H+ R A + G R R D+S L+ A+RIT EGHVY++T R P + RAAG + A G R L +FG D R +I DP PY AIG L D D +C+GTLVGTDAVLTAAHCV+D TN + TAF+PA P+G F V+Y T ++AW D +D F YD+AV+R+A S++TG SA D+VGY MG+ + C +P + + GYPG G ++ SG CSD + Y CGD Sbjct: 1 MDRFKAEGFFFTGVEHFG-----THNGSRDAPTANSDGARHRQRRDASELSSA---AIRITREGHVYRSTDQRLVPAAGY--APFLRAAGRADVMTHAHTSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNNRDLLIFGTDTRTKIDDPAAQEPYAAIGLLLSDYNTTDDVVN------LCSGTLVGTDAVLTAAHCVYD--TNMY---TAFFPAAK-----NYTSPFGEFLVLYCTTFAAWVDSGAED-FEYDMAVVRIANSSTTGLSALDSVGYSMGIARNACDMP-AVQLAGYPGDKNGTLWSSGVCSDVE--YDCGD 298
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A836CF25_9STRA (Trypsin-like cysteine/serine peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF25_9STRA) HSP 1 Score: 150 bits (380), Expect = 9.190e-37 Identity = 108/287 (37.63%), Postives = 147/287 (51.22%), Query Frame = 1 Query: 280 ASAGPGTRRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARS-----LDALGGTVDPYGGFGVVYRTVYSAWSD--GSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAVTLI--DGNAQVMGVVSHHV----GPASALSTASSSAWLNGDAYNTLTMMNAAKFADIYTWMTEPVPQ 1101 A+ G RR + R + N TPY A+G L ++ Y+C+G LVG DAVLTA HCV+D VD T+ PA + AL G PYG F V+Y T +S W D G+ ++ + YD+AVLRL S ++G +A Y+MG+ G C LP S +VVGYPG M+ S C + Y+CG + T CDW G+SG PA D + G+VSHH+ + +ST SS+ + + N LTMM KF +Y W T P+ Q Sbjct: 126 AADGSAHRRLSSSSSSGTRAVVKPYNKTPYAAVGLLDAELDTKG----NPEYLCSGALVGEDAVLTAGHCVYD------VDPTSGKPAAIKVGLFVPALAGQTAPYGLFPVLYATSFSQWLDSVGTDNENYAYDMAVLRLDVSTTSGKNA-----YYMGIDGQRCPLP-SLSVVGYPGDKTQTMWASNKCQNVD--YKCGTGIATTTCDWTTGDSGAPAWAFAGKDYGNLIYGIVSHHIDVYTSQGATVSTVSSAMY--PEVTNDLTMMTRDKFEWVYYWATAPLKQ 392
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A835YTS9_9STRA (Serine protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS9_9STRA) HSP 1 Score: 139 bits (350), Expect = 3.650e-32 Identity = 94/210 (44.76%), Postives = 114/210 (54.29%), Query Frame = 1 Query: 283 SAGPGTRRGLTVFGQDDRVEITDPNVT-PYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDP-YGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSG 906 +A P T R L VFG DDR I +P PY AIG L D + C+GTLVG DAVLTA HCV D VDA A GG+ P +G F V+Y+T ++ W+D D YD+AVL+L S++TG SAFDT GY MGV D C +P VGYP G M+ SG C D Y CGD+ +NCD V G+SG Sbjct: 213 TAPPRTLRELLVFGTDDRTRIENPAAAEPYSAIGLLQSDNDTMP----DSVFRCSGTLVGEDAVLTAGHCVHD------VDA----------ATGGSAPPPFGSFPVLYQTSFARWTDAGDWD---YDVAVLKLGVSSTTGLSAFDTTGYHMGVSKDTCDMPP-VRDVGYPADKGFTMWGSGICKDID--YTCGDESAASNCDVVVGDSG 396
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: UPI00165CFDD9 (serine protease n=1 Tax=Aquibium microcysteis TaxID=675281 RepID=UPI00165CFDD9) HSP 1 Score: 89.7 bits (221), Expect = 9.500e-16 Identity = 66/167 (39.52%), Postives = 85/167 (50.90%), Query Frame = 1 Query: 316 VFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVD-PYGGFGVV-------YRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPG 792 VFG+DDR++ITD P+ IGQ+ + E +C+GTL+G AV+TAAHC++ E W+ FYP L G D PYGGFG V Y T Y + GSV P+D+AVL L A DTVG+ MG A + +VGYPG Sbjct: 133 VFGEDDRIQITDTRKYPFNTIGQIW------SKNSKGEWSICSGTLIGKSAVITAAHCLYSHEDGGWLSDYEFYPG-----LNGQNDAPYGGFGFVDAYILEGYITNYKGYY-GSV---VPWDLAVLILDKPAG------DTVGW-MGYATYDPAYAFNANIVGYPG 277
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A8J4GJZ5_9CHLO (Kazal-like domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GJZ5_9CHLO) HSP 1 Score: 90.9 bits (224), Expect = 1.680e-15 Identity = 78/247 (31.58%), Postives = 113/247 (45.75%), Query Frame = 1 Query: 301 RRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDS--GACSDAQG---HYQCGDDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGVVS---HHVGPASALSTASSSAWLN 1017 RR L +F DDR++ P+ A+GQ+ ++ D + YVC+GTLVG D VLTA HCVF + + A F P+R + G V+P+G Y T+Y +S S DP DIAV+ L+ + A +MGV + C+ +A V Y G D G+C Q C D L CD G SG P + + MG H++ L+ S+S+++N Sbjct: 366 RRSLGIFDTDDRIDCPRTPTYPFTAVGQI--NIRDTSGN-----YVCSGTLVGPDVVLTAGHCVFSRAGQAFYKALDFAPSRYRNLDGQVVNPFGVILWTYVTLYQGYSSLSTPDPNIEDIAVINLSQRIGSQAG-------WMGVF-EPCS---PYAPVRYVALTAGYPSDQLPGSCKTTQCVVLQEPCTDGYLYHKCDTASGQSGSPMYMMAMTAGRKMGPYIRGVHNIEWVQELANGSTSSYIN 594
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A429YY04_9HYPH (Serine protease n=2 Tax=Aquibium carbonis TaxID=2495581 RepID=A0A429YY04_9HYPH) HSP 1 Score: 89.0 bits (219), Expect = 2.050e-15 Identity = 65/167 (38.92%), Postives = 86/167 (51.50%), Query Frame = 1 Query: 316 VFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVD-PYGGFGVV-------YRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPG 792 VFG+DDRV+ITD P+ IGQ+ + E +C+GT++G AVLTAAHC++ + W+ FYP L G D PYGGFG V Y T Y + GSV P+D+AVL L A +TVG+ MG A P + ++GYPG Sbjct: 150 VFGEDDRVQITDTRKYPFNTIGQIW------SKNSKGEWSICSGTMIGKSAVLTAAHCLYSHDDGGWLADYEFYPG-----LNGQNDAPYGGFGFVDAYILEGYITNYQGFY-GSV---VPWDLAVLILDKPAG------ETVGW-MGYATYDPAYPFTANIIGYPG 294
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A8J4BDG3_9CHLO (Kazal-like domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BDG3_9CHLO) HSP 1 Score: 88.6 bits (218), Expect = 9.080e-15 Identity = 74/246 (30.08%), Postives = 111/246 (45.12%), Query Frame = 1 Query: 301 RRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCA--LPESFAVV--GYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGVVS---HHVGPASALSTASSSAWLN 1017 RR L +F DDR++ P+ A+GQ+ ++ D + YVC+GTLVG D VLTA HCVF + + F P+R + G V+P+G Y T+Y +S S DP DIAV+ L+ + A +MG+ + C+ P + + GYP + C Q C D L CD G SG P + + MG H++ L+ S+S+++N Sbjct: 364 RRSLGIFDTDDRIDCPRTPTYPFTAVGQI--NIRDTSGN-----YVCSGTLVGPDVVLTAGHCVFSRVGQAFYKELDFAPSRYRNLDGQVVNPFGVILWTYVTLYQGYSSLSTPDPNIEDIAVINLSQRIGSQAG-------WMGIF-EPCSPYAPVRYVALTAGYPSDQSPGSCKTTQCVVLQ--EPCTDGYLYHKCDTASGQSGSPMYMMAMTAGRKMGPYIRGVHNIEWVQELANGSTSSYIN 592
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: UPI0015C616F9 (trypsin-like serine protease n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI0015C616F9) HSP 1 Score: 80.5 bits (197), Expect = 5.500e-13 Identity = 70/215 (32.56%), Postives = 96/215 (44.65%), Query Frame = 1 Query: 328 DDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCG------DDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGV 954 DDRV +T + P+ AIG++ F D G Y+CTGTLV D VLT AHCV + +T F P + + G + GG + + P P D A L+L + T+G+ L + PE F +VGY G D S + A H C DD+L NCD GG+SGGP + +IDG ++ V Sbjct: 69 DDRVPVTSRSY-PWSAIGRVEFQ--DENGDG----YICTGTLVKPDIVLTNAHCVVNPDTGRLFQNIRFAP----NLIDGRLKDEGGRANAIDLLAGTDFRDRNEPPHPDDWAFLQLDKPLG---EKYGTIGWQALPLPMLIENPEQFIMVGYSG----DFPASNPGATAGAHEGCSILGSVNDDVLRHNCDTEGGSSGGPILAVIDGEYTIVAV 265 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18116 ID=mRNA_18116|Name=jgi.p|Trimin1|354325|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1689bp|location=Sequence derived from alignment at Contig_231:41988..44107+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAACCGCTTCGCAGCAGAGGGGTTTGTCTTCTCGAGCTTTGAATCCTTback to top protein sequence of jgi.p|Trimin1|354325 >Trimin1|354325|estExt_Genemark1.C_Ctg_2310004 ID=Trimin1|354325|estExt_Genemark1.C_Ctg_2310004|Name=jgi.p|Trimin1|354325|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=369bp MNRFAAEGFVFSSFESFAPLPTRSHDKGRARRAAAASGDRPRDGDSSTLNback to top mRNA from alignment at Contig_231:41988..44107+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18116 ID=mRNA_18116|Name=jgi.p|Trimin1|354325|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2120bp|location=Sequence derived from alignment at Contig_231:41988..44107+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_231:41988..44107+ >mRNA_18116 ID=mRNA_18116|Name=jgi.p|Trimin1|354325|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1107bp|location=Sequence derived from alignment at Contig_231:41988..44107+ (Tribonema minus UTEX_B_3156 )back to top |