mRNA_18100 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354403
Unique Name	mRNA_18100
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354403 vs. uniprot
Match: A0A835Z944_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z944_9STRA)

HSP 1 Score: 537 bits (1384), Expect = 1.060e-189
Identity = 334/337 (99.11%), Postives = 334/337 (99.11%), Query Frame = 1

Query:    1 MCNLERLAAVVDCILERHELVHRRSGSVVEGVKQELRQVATQTQTRGQDAPILPPQLRQHVTYNALTRTAGLAAQLVRLQNLKEAQEAEDEAKQQDRAAAQPGREEWRQMRGPLHGGDEEGXXXXXXXXXXXXXXXXXXXXXXXXKRVLPQRADSVEHEAVIETARLRIRGTASMSPNKERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKHPHGAAAPTGGKGEEREEHNGGGEGWRKGMMEGASKSIRGLGAAPNEAAAXXXXXXXXXXXXXXXXXXXXXXXXXGAGQGSGSLCGCNSVSGGSAGGDYREWRRQRWWQASCSGXXXGT 1011
            MCNLERLAAVVDCILERHELVHRRSGSVVEGVKQELRQVATQTQTRGQDAPILPPQLRQHVTYNALTRTAGLAAQLVRLQNLKEAQEAEDEAKQQDRAAAQPGREEWRQMRGPLHGGDEEGXXXXXXXXXXXXXXXXXXXXXXXXKRVLPQRADSVEHEAVIETARLRIRGTASMSPNKERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKHPHGAAAPTGGKGEEREEHNGGGEGWRKGMMEGASKSIRGLGAAPNEAAAXXXXXXXXXXXXXXXXXXXXXXXXXGAGQGSGSLCGCNSVSGGSAGGDYREWRRQRWWQASCSG   GT
Sbjct:    1 MCNLERLAAVVDCILERHELVHRRSGSVVEGVKQELRQVATQTQTRGQDAPILPPQLRQHVTYNALTRTAGLAAQLVRLQNLKEAQEAEDEAKQQDRAAAQPGREEWRQMRGPLHGGDEEGXXXXXXXXXXXXXXXXXXXXXXXXKRVLPQRADSVEHEAVIETARLRIRGTASMSPNKERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKHPHGAAAPTGGKGEEREEHNGGGEGWRKGMMEGASKSIRGLGAAPNEAAAXXXXXXXXXXXXXXXXXXXXXXXXXGAGQGSGSLCGCNSVSGGSAGGDYREWRRQRWWQASCSGGGGGT 337

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BLAST of jgi.p|Trimin1|354403 vs. uniprot
Match: A0A835YGC4_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGC4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.300e-13
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1

Query:  535 KERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKHPHGAAAPT 681
            K+ YKRPRKRA+EVDRKYTC HC +GYGNASSL+LHV+LKHP  AAAP 
Sbjct:   40 KKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAPA 88

[Close]

BLAST of jgi.p|Trimin1|354403 vs. uniprot
Match: A0A835Z6G2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.160e-12
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1

Query:  517 ASMSPNKERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKH 657
            AS S  K++YKRPRKRAHEVDRK+TC HC +GYGNASSL+LHVRLKH
Sbjct:   13 ASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKH 59

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354403 vs. uniprot

BLAST of jgi.p|Trimin1|354403 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835Z944_9STRA	1.060e-189	99.11	C2H2-type domain-containing protein n=1 Tax=Tribon...	[more]
A0A835YGC4_9STRA	5.300e-13	77.55	C2H2-type domain-containing protein n=1 Tax=Tribon...	[more]
A0A835Z6G2_9STRA	1.160e-12	78.72	C2H2-type domain-containing protein n=1 Tax=Tribon...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_242	contig	Contig_242:24003..28023 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354403\|estExt_Genemark1.C_Ctg_2420005
Hectar predicted targeting category	other localisation
TranscriptId	354725
Track	FilteredModels1
ProteinId	354403

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354403	gene_18100	Tribonema minus UTEX_B_3156	gene	Contig_242 24003..28023 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354403	Trimin1\|354403\|estExt_Genemark1.C_Ctg_2420005	Tribonema minus UTEX_B_3156	polypeptide	Contig_242 24003..27831 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_18100_1	exon_18100_1	Tribonema minus UTEX_B_3156	exon	Contig_242 24003..24116 +
exon_18100_2	exon_18100_2	Tribonema minus UTEX_B_3156	exon	Contig_242 25019..25153 +
exon_18100_3	exon_18100_3	Tribonema minus UTEX_B_3156	exon	Contig_242 25846..26085 +
exon_18100_4	exon_18100_4	Tribonema minus UTEX_B_3156	exon	Contig_242 26371..26441 +
exon_18100_5	exon_18100_5	Tribonema minus UTEX_B_3156	exon	Contig_242 27256..27464 +
exon_18100_6	exon_18100_6	Tribonema minus UTEX_B_3156	exon	Contig_242 27587..28023 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_18100	CDS_18100	Tribonema minus UTEX_B_3156	CDS	Contig_242 24003..24116 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_18100	UTR3_18100	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_242 27832..28023 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_242:24003..28023+
coding sequence from alignment at Contig_242:24003..28023+

spliced messenger RNA

>mRNA_18100 ID=mRNA_18100|Name=jgi.p|Trimin1|354403|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1206bp|location=Sequence derived from alignment at Contig_242:24003..28023+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAATCTTGAGAGGCTGGCCGCTGTGGTCGACTGCATCTTGGAAAG
GCACGAGCTGGTGCACAGGCGGAGCGGATCGGTCGTGGAGGGTGTTAAGC
AGGAGCTGCGACAGGTGGCGACGCAGACCCAGACCCGGGGCCAGGACGCA
CCCATCCTGCCCCCTCAACTGCGGCAGCACGTAACCTACAATGCGCTCAC
GCGCACCGCGGGGCTGGCAGCCCAGCTGGTGCGGCTGCAGAATCTAAAGG
AGGCGCAGGAGGCAGAAGATGAGGCAAAGCAGCAGGACAGAGCGGCCGCA
CAGCCAGGGAGGGAAGAATGGAGGCAGATGAGGGGTCCGCTGCACGGCGG
CGATGAGGAGGGGAAGGAGGCAGCGCGCAAAGCGAAGCAGCAGGAGCACG
AGATCGCACAGCAACAGAACAAGGAACGGAGGCAGAAGAGGGTGCTACCC
CAAAGAGCTGACAGTGTGGAGCACGAAGCAGTGATTGAGACGGCGCGGTT
GCGGATACGGGGCACGGCTTCCATGTCGCCAAACAAGGAGCGGTACAAGA
GACCAAGAAAGCGCGCCCACGAGGTCGACCGCAAGTACACATGCGCGCAC
TGCCACAGAGGCTATGGCAACGCGTCGTCGCTCCACCTGCACGTCAGGCT
CAAGCACCCTCATGGCGCCGCTGCCCCCACGGGCGGGAAAGGGGAGGAGC
GTGAGGAACACAATGGTGGCGGCGAAGGGTGGAGGAAGGGCATGATGGAA
GGGGCGAGCAAGAGCATTAGAGGCCTGGGGGCAGCGCCAAATGAGGCAGC
AGCGGCGGCAGCAGCGGCGGCGGCACTGGCGGCTATGGCGCCGGTTGCAC
CAGCAGTGGCGGCGGCGGCGCCAGTAGCAGGGGCGGGGCAGGGCAGCGGC
AGTCTCTGTGGCTGCAACAGCGTCAGCGGCGGCAGTGCTGGCGGCGATTA
CAGAGAGTGGCGCCGGCAGCGGTGGTGGCAGGCCAGCTGCAGCGGCGGCG
GCGGCGGCACCTGACAGCTGAGGCGCATGTGGCCACCGCAGCTGCAGCTG
CTACGCCAGCAGCTGCAGCAGCGGAGTTGCAGCTGAAAAGCTGACGGCAA
TTTGATGCATGGATTCAGGAGGCAGGTATACCTATAGTTAGGCCGGGCTT
GTGCTGCGCTTGTGGGCCCCAAGCTCGGTAGGCATGTGCGCTTCACGGAA
GAGGCA

protein sequence of jgi.p|Trimin1|354403

>Trimin1|354403|estExt_Genemark1.C_Ctg_2420005 ID=Trimin1|354403|estExt_Genemark1.C_Ctg_2420005|Name=jgi.p|Trimin1|354403|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=338bp
MCNLERLAAVVDCILERHELVHRRSGSVVEGVKQELRQVATQTQTRGQDA
PILPPQLRQHVTYNALTRTAGLAAQLVRLQNLKEAQEAEDEAKQQDRAAA
QPGREEWRQMRGPLHGGDEEGKEAARKAKQQEHEIAQQQNKERRQKRVLP
QRADSVEHEAVIETARLRIRGTASMSPNKERYKRPRKRAHEVDRKYTCAH
CHRGYGNASSLHLHVRLKHPHGAAAPTGGKGEEREEHNGGGEGWRKGMME
GASKSIRGLGAAPNEAAAAAAAAAALAAMAPVAPAVAAAAPVAGAGQGSG
SLCGCNSVSGGSAGGDYREWRRQRWWQASCSGGGGGT*

mRNA from alignment at Contig_242:24003..28023+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_18100 ID=mRNA_18100|Name=jgi.p|Trimin1|354403|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4021bp|location=Sequence derived from alignment at Contig_242:24003..28023+ (Tribonema minus UTEX_B_3156 )
ATGTGCAATCTTGAGAGGCTGGCCGCTGTGGTCGACTGCATCTTGGAAAG
GCACGAGCTGGTGCACAGGCGGAGCGGATCGGTCGTGGAGGGTGTTAAGC
AGGAGCTGCGACAGGTAGAGTCCTCGAAAAATCATCGACTTGATCGATGA
AAATTCTTGAAAAACTCATACTTCTATTTGCCTTGAAAAGCTTGCACTCT
TCCCTGCCGTCTACTCATGAGTGATTCATAGAACGAAACACATATGACAA
CATACATCGGAGTATCTGCTTATGTGTACATTTGATTGACTTGTCTGTGG
CTTGCGTGGAGGCGCATGCTGGTTGGGACAGCATTAGACTATCAACTCAT
CGAGCCTCTGTGGCTTGTGCCAAGCAGATACAAGCGGTACCACTATCAGA
TGGCTAACCTATTCATGATGTCTTTCTGTGACTTCACGCGTGGCATTGGC
AGTTTAACAACTCCCCACACATTCAACACGACAGCTAGTGGCAAGAAGTC
GAAGGCCTGCATGTCGCTGTCCGTGTACTAGCCCAAGCTCTTCCCGACGC
TACAACGATTGTCAACAAGACCTGCTGACTACAGCCATCTTGCTGACTAT
GTAGCTGCCTTCGAGTGAATTTACTCATACCAAATACAACTCCACAACCG
TCCATTCATCCAACAGCTTGTGGCAATAGGACAAAGATCTACCCCTGTGC
TAGCCCAAACCACCCTTCTCGATGCGACAACAACGAGATTTGCTATCAGA
GCCATCGTGAACCATTATCGCTGACTAGCTGCTGAAAACTCTATGGCTTG
CGGCGACGCAGCAGGTGATGTAGACCCAGACCCGGCACCATAACGCGTTC
AAATGCCTGACGCAAACCACATCCTGTCACCAATCAACACCCGAAATAAC
GCTCTTCTTTGTGATCCATTGCGGCAGAAGCTGACACAAAATACTACTGG
GAAGTACTTCATTAGATCACTGATCTAATGCTTCACTGTCACAATATATT
CCTTACGTCGATGCAGGTGGCGACGCAGACCCAGACCCGGGGCCAGGACG
CACCCATCCTGCCCCCTCAACTGCGGCAGCACGTAACCTACAATGCGCTC
ACGCGCACCGCGGGGCTGGCAGCCCAGCTGGTGCGGCTGCAGAATCTAAA
GGTGCCACATAACCAGTCATGTAACTGTCATAAAACGGCCGCTGCTTCAA
TGGGGTCATGAGTACTTGAGCGGTAGGTAGGTAGCTCACATCGCTCTATC
GGCAGTGGTCTTGCTTGCGGATGGGGATGTGGGACGTCACACGTTGATTG
AAGGATCTGTTTTCAGTTGAACGATGTTCAGGCGCAGTCGTCTGTGCGTC
AGTCCTGATATCTCATTCAAGTCTCCTTGCTTCTCTCACTGCTTGCGGTG
CGTTGCCTGTGGCGTTGAACTGCCGTGCAGGAGGAGTTTGCCAGTCAGGC
GTACGATGTCTTAGGCAACGCTATGGGCAATAGGGAATGCATTGCCCAGG
TTTGTATGCTTTGTCATTTGAAGCACACTGCATGTATACTGGAAGCAACA
CAAGTACTACATGTGTTGACACACATGCCTTGGTGTTCAACAAAAGTATG
CGCAGAATGAAGTCAACTCAGAGATGTATGTATTCATAAATCAATATATA
CCTCACAGCATCTCTATGAAGTATAGCTCAGCAACTGCTGACGTCGGCAC
TGTTGGATCTGCCATCTCACATGTACCATGGTACCGCGATGCATTCTGCT
CGCGTCCAGACTGCATGACACCTGCGCTCGCTTTAACCCTAAACCCTAAC
CCTAAACCCTAACCCTACCCCTAACCCTAAATCTTGCGATCAGGAGGCGC
AGGAGGCAGAAGATGAGGCAAAGCAGCAGGACAGAGCGGCCGCACAGCCA
GGGAGGGAAGAATGGAGGCAGATGAGGGGTCCGCTGCACGGCGGCGATGA
GGAGGGGAAGGAGGCAGCGCGCAAAGCGAAGCAGCAGGAGCACGAGATCG
CACAGCAACAGAACAAGGAACGGAGGCAGAAGAGGGTGCTACCCCAAAGA
GCTGACAGTGTGGAGCACGAAGCAGTGATTGAGGTAAGCATTTGAGCATG
CACGGGTGCATACATGAGCAATTGCTCACCGTAATAAGCAGCACTGTTGC
GTGCTCGACATGGCAAGTGCTGCTGGCAGTGCAGGCGAAGCATGCAGGCG
ATGCACGCTGCGTCAAGCGAGCTGTTCGCACACGGCGCAGTGACGAGCTG
CAGTGCGAAACTATATATACATACAAACCTACATGCGCCGTGCAGTACTA
CATGCCGTATGTAGCACTATGATGCTCACACACTCACACTGCGCATGTTG
ACGGACATCTGGTTGCAGACGGCGCGGTTGCGGATACGGGGCACGGCTTC
CATGTCGCCAAACAAGGAGCGGTACAAGAGACCAAGAAAGTGAGTGTGCC
GCGAGTGTGAATGAGTTGTAGGCGAATGATCTTCAGGCCCCAAGAACGAG
CCTATTTCTATAGGGTTTTCACCACATGCGCCGGTACTGCCTGGTACAAC
CGGTATTGCCTGAGAGCCGCCAACTTCATTCTGTGCGTGTGGTCATACTC
TCAGACTGGTCCTGCTGCAAAGGACGCGCCATGCGTTTTTGGCGTGATGG
CGCTTAGCGCGCATTTCGCACTGCAGTCTCAGCAATGCGGTCACACTGGC
TGCAATCACGTCTCTGTCCTTCTCGCCGTGGTCCAAAGCGCCCGTTGAAG
TTGAAGTAGAAGTTTGCTCGCGGAAGTTTTTTTTTGTGGCTGCGGGTGCC
CAACCGAGTTTCGGCGTGTCGGTAACACTGTATACTGACAAGGCAGGACT
TCTGACATATCTATCTGCAAGGCACAACATTGCCATGCCGCTTGGTCTCG
TCACTACATAGCGAAAGGGAACCACATGTATCAGGCTGTGATGATCAGTG
TGATTGTCTCTGGTCTGGCTCGCTACTATTGCAATTTGCACTCTTTGCCC
CCTTTTTCTACACTCCACAACCCGCTTATCACTCACTTGGGGGGTCTCCC
GCCCCATCCTTCGGAGGTGAAGGAAGGGGCTTTCTCGGGTGACCGAATTG
CTGTTTGAGGTACCTACTACGCATGCCGCCAGCTCGCCGCGCGATGCTAC
TATTGAATATGTATCCGCCTTCGCTGCCGCCACTGTCCTAACCCTAACCC
TAAAACCTAACCCTAATCCTCAAGCCAAACCCTAACTGTAACCTTTGCCG
CAGGCGCGCCCACGAGGTCGACCGCAAGTACACATGCGCGCACTGCCACA
GAGGCTATGGCAACGCGTCGTCGCTCCACCTGCACGTCAGGCTCAAGCAC
CCTCATGGCGCCGCTGCCCCCACGGGCGGGAAAGGGGAGGAGCGTGAGGA
ACACAATGGTGGCGGCGAAGGGTGGAGGAAGGGCATGATGGAAGGGGCGA
GCAAGAGCATTAGTAGGCCCTCTATGAGCCTGGGAAGCGGCGTCGGAAGC
CTCGAGCATTGCACTGGCAGTAGCGGTGGAGGGGGATAGCGCTTTGTTGC
GACAGTTGCGTGCGGTCCGCAGCAGGCTGAACAGGAGGCCTGGGGGCAGC
GCCAAATGAGGCAGCAGCGGCGGCAGCAGCGGCGGCGGCACTGGCGGCTA
TGGCGCCGGTTGCACCAGCAGTGGCGGCGGCGGCGCCAGTAGCAGGGGCG
GGGCAGGGCAGCGGCAGTCTCTGTGGCTGCAACAGCGTCAGCGGCGGCAG
TGCTGGCGGCGATTACAGAGAGTGGCGCCGGCAGCGGTGGTGGCAGGCCA
GCTGCAGCGGCGGCGGCGGCGGCACCTGACAGCTGAGGCGCATGTGGCCA
CCGCAGCTGCAGCTGCTACGCCAGCAGCTGCAGCAGCGGAGTTGCAGCTG
AAAAGCTGACGGCAATTTGATGCATGGATTCAGGAGGCAGGTATACCTAT
AGTTAGGCCGGGCTTGTGCTGCGCTTGTGGGCCCCAAGCTCGGTAGGCAT
GTGCGCTTCACGGAAGAGGCA

Coding sequence (CDS) from alignment at Contig_242:24003..28023+

>mRNA_18100 ID=mRNA_18100|Name=jgi.p|Trimin1|354403|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1014bp|location=Sequence derived from alignment at Contig_242:24003..28023+ (Tribonema minus UTEX_B_3156 )
ATGTGCAATCTTGAGAGGCTGGCCGCTGTGGTCGACTGCATCTTGGAAAG
GCACGAGCTGGTGCACAGGCGGAGCGGATCGGTCGTGGAGGGTGTTAAGC
AGGAGCTGCGACAGGTGGCGACGCAGACCCAGACCCGGGGCCAGGACGCA
CCCATCCTGCCCCCTCAACTGCGGCAGCACGTAACCTACAATGCGCTCAC
GCGCACCGCGGGGCTGGCAGCCCAGCTGGTGCGGCTGCAGAATCTAAAGG
AGGCGCAGGAGGCAGAAGATGAGGCAAAGCAGCAGGACAGAGCGGCCGCA
CAGCCAGGGAGGGAAGAATGGAGGCAGATGAGGGGTCCGCTGCACGGCGG
CGATGAGGAGGGGAAGGAGGCAGCGCGCAAAGCGAAGCAGCAGGAGCACG
AGATCGCACAGCAACAGAACAAGGAACGGAGGCAGAAGAGGGTGCTACCC
CAAAGAGCTGACAGTGTGGAGCACGAAGCAGTGATTGAGACGGCGCGGTT
GCGGATACGGGGCACGGCTTCCATGTCGCCAAACAAGGAGCGGTACAAGA
GACCAAGAAAGCGCGCCCACGAGGTCGACCGCAAGTACACATGCGCGCAC
TGCCACAGAGGCTATGGCAACGCGTCGTCGCTCCACCTGCACGTCAGGCT
CAAGCACCCTCATGGCGCCGCTGCCCCCACGGGCGGGAAAGGGGAGGAGC
GTGAGGAACACAATGGTGGCGGCGAAGGGTGGAGGAAGGGCATGATGGAA
GGGGCGAGCAAGAGCATTAGAGGCCTGGGGGCAGCGCCAAATGAGGCAGC
AGCGGCGGCAGCAGCGGCGGCGGCACTGGCGGCTATGGCGCCGGTTGCAC
CAGCAGTGGCGGCGGCGGCGCCAGTAGCAGGGGCGGGGCAGGGCAGCGGC
AGTCTCTGTGGCTGCAACAGCGTCAGCGGCGGCAGTGCTGGCGGCGATTA
CAGAGAGTGGCGCCGGCAGCGGTGGTGGCAGGCCAGCTGCAGCGGCGGCG
GCGGCGGCACCTGA