mRNA_1807 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130548
Unique NamemRNA_1807
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Match: A0A836CFI5_9STRA (Lipase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFI5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.190e-58
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1
Query:    1 LVYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLAIAFSM 270
            LVYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLAIAFSM
Sbjct:    1 LVYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLAIAFSM 90          
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Match: A0A835YVD9_9STRA (Alpha/beta hydrolase fold-3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.190e-23
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    1 LVYIHGGGWISGQAPMYVRALTN--VQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLAIAFSM 270
            ++++HGGGWI G   MY   LT     +  D+++V VEYRLAPET+FPGAL+D   A+ W++E    +GGD  RIALAG+SAGGNLAIA +M
Sbjct:   14 MLFMHGGGWIRGTLEMY-DPLTRGFALKMQDFIVVSVEYRLAPETKFPGALSDCLQALRWVAERGVHFGGDTSRIALAGDSAGGNLAIALAM 104          
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Match: A0A158RZB4_9SPHN (Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Novosphingobium sp. KN65.2 TaxID=1478134 RepID=A0A158RZB4_9SPHN)

HSP 1 Score: 92.4 bits (228), Expect = 2.450e-20
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 LVYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLA 255
            ++YIHGGG++ G A + +R    V  AL+ V+V V+YRLAPETRF G+LAD + A+ W+ +H A  GGD  RIA+ GESAGG  A
Sbjct:  119 ILYIHGGGFVMGTARLSIRGAQEVAAALNCVVVSVDYRLAPETRFVGSLADNYAALKWVHQHAAELGGDATRIAVMGESAGGGHA 203          
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Match: UPI00146D825E (alpha/beta hydrolase n=1 Tax=Pseudonocardia acidicola TaxID=2724939 RepID=UPI00146D825E)

HSP 1 Score: 91.3 bits (225), Expect = 3.830e-20
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 LVYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLAIAFSM 270
            +VY HGGGW+ G+     R +  +      VIV V+YRLAPE R+P A  D + A  W++EH A  GGD  RIA+AG+SAGGNLA A ++
Sbjct:   77 IVYFHGGGWVIGELDTVDRPVRGIANRTGAVIVSVDYRLAPEHRYPAAFDDSYAATVWVAEHAAELGGDPARIAVAGDSAGGNLAAAVAL 166          
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Match: A0A518UCU4_9PROT (Abhydrolase_3 domain-containing protein n=1 Tax=Denitratisoma sp. DHT3 TaxID=1981880 RepID=A0A518UCU4_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 5.500e-20
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    4 VYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLA 255
            VY HGGG+++G   MY    + +      V+V V+YRLAPETRFPGA  D   A+ WI  + AR+ GD  RIA+AG+SAGGNLA
Sbjct:   80 VYFHGGGFVTGDLDMYDATCSRIANRAGSVVVSVDYRLAPETRFPGAADDAMAALRWIHANAARFAGDARRIAVAGDSAGGNLA 163          
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Match: A0A6S6XSP5_9PROT (Carboxylesterase NlhH n=1 Tax=Denitratisoma oestradiolicum TaxID=311182 RepID=A0A6S6XSP5_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 1.070e-19
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    4 VYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLA 255
            VY HGGG++ G   MY    T +      ++V V+YRLAPETRFPG + D   A+ W+ EH   + GD  RIA+AG+SAGGNLA
Sbjct:   80 VYYHGGGFVFGTLDMYDATCTRIANRTGSIVVSVDYRLAPETRFPGGIDDALAALRWVHEHAPSFSGDPQRIAVAGDSAGGNLA 163          
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Match: A0A534RYM1_9DELT (Alpha/beta hydrolase (Fragment) n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534RYM1_9DELT)

HSP 1 Score: 89.4 bits (220), Expect = 1.210e-19
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 LVYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLA 255
            LVY+HGGGW+ G   +Y  A  ++      ++V VEYRLAPE  FP A  D   A  W++EH A +GGD  R+A+ G+SAGGNLA
Sbjct:   78 LVYLHGGGWVIGSIEVYDGACRSLANRAGCIVVSVEYRLAPEHPFPAAPEDCHAATRWVAEHAATFGGDARRVAVGGDSAGGNLA 162          
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Match: A0A7V8YR94_9ACTN (Alpha/beta hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8YR94_9ACTN)

HSP 1 Score: 89.4 bits (220), Expect = 2.090e-19
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 LVYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLAIAFSM 270
            LV+ HGGGW  G    +     ++  A+  V+V V+YRLAPE +FP A  D F A  W++EH A+ GGD  RIA+ G+SAGGNLA   S+
Sbjct:   79 LVWFHGGGWTIGSLETHDNTCRSLANAVGCVVVSVDYRLAPEHKFPAAADDAFAATQWVAEHAAQLGGDPKRIAVGGDSAGGNLAAVVSL 168          
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Match: A0A1H2GRK4_9PSED (Acetyl esterase n=1 Tax=Pseudomonas pohangensis TaxID=364197 RepID=A0A1H2GRK4_9PSED)

HSP 1 Score: 89.7 bits (221), Expect = 2.330e-19
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 LVYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLAIAFSM 270
            ++Y HGGGW+ G    +      +      ++V V+YRLAPE  FP AL D   A+HW++ H   + GD+ RIALAG+SAGGNLA A S+
Sbjct:  109 IIYFHGGGWVLGNLHSHDNLCRTLAAKTSAIVVSVDYRLAPENPFPAALDDAVAALHWVAAHAPTFNGDSTRIALAGDSAGGNLAAALSL 198          
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Match: A0A7V8JYJ7_9BURK (Carboxylesterase NlhH n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A7V8JYJ7_9BURK)

HSP 1 Score: 89.4 bits (220), Expect = 2.930e-19
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 LVYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALADVFHAVHWISEHIARYGGDNLRIALAGESAGGNLAIA 261
            ++Y HGGGW+     +Y      +  A   +++ V+YRLAPE +FP A  D F A  W+ EH A +GGD  R+ALAGESAGGNLA+A
Sbjct:  109 VLYFHGGGWVIANRQVYDGGARGLAAAAQAMVLSVDYRLAPEHKFPAAWDDAFAAYRWLIEHAASFGGDASRLALAGESAGGNLAVA 195          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130548 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFI5_9STRA1.190e-58100.00Lipase (Fragment) n=1 Tax=Tribonema minus TaxID=30... [more]
A0A835YVD9_9STRA1.190e-2354.35Alpha/beta hydrolase fold-3 n=1 Tax=Tribonema minu... [more]
A0A158RZB4_9SPHN2.450e-2052.94Alpha/beta hydrolase fold-3 domain protein n=1 Tax... [more]
UPI00146D825E3.830e-2048.89alpha/beta hydrolase n=1 Tax=Pseudonocardia acidic... [more]
A0A518UCU4_9PROT5.500e-2052.38Abhydrolase_3 domain-containing protein n=1 Tax=De... [more]
A0A6S6XSP5_9PROT1.070e-1950.00Carboxylesterase NlhH n=1 Tax=Denitratisoma oestra... [more]
A0A534RYM1_9DELT1.210e-1949.41Alpha/beta hydrolase (Fragment) n=2 Tax=Deltaprote... [more]
A0A7V8YR94_9ACTN2.090e-1947.78Alpha/beta hydrolase n=1 Tax=Actinomycetia bacteri... [more]
A0A1H2GRK4_9PSED2.330e-1945.56Acetyl esterase n=1 Tax=Pseudomonas pohangensis Ta... [more]
A0A7V8JYJ7_9BURK2.930e-1948.28Carboxylesterase NlhH n=3 Tax=unclassified Variovo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_26contigContig_26:151284..151553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130548|gw1.26.19.1
BRITEko00000,ko00001,ko01000
KEGG rclassRC00662,RC01550
KEGG ReactionR02231,R06622
KEGG Pathwayko00930,ko01120,ko01220,map00930,map01120,map01220
KEGG koko:K03379
EC1.14.13.22
DescriptionFlavin-binding monooxygenase-like
COG categoryP
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG0657@1|root,COG2072@1|root,COG0657@2|Bacteria,COG2072@2|Bacteria,2GKYU@201174|Actinobacteria,4FZ2I@85025|Nocardiaceae
Evalue3.78e-20
Seed ortholog1429046.RR21198_1164
Hectar predicted targeting categoryother localisation
TranscriptId130870
TrackFilteredModels1
ProteinId130548
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130548gene_1807Tribonema minus UTEX_B_3156 geneContig_26 151284..151553 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1807_1exon_1807_1Tribonema minus UTEX_B_3156 exonContig_26 151284..151553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1807CDS_1807Tribonema minus UTEX_B_3156 CDSContig_26 151284..151553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130548Trimin1|130548|gw1.26.19.1Tribonema minus UTEX_B_3156 polypeptideContig_26 151284..151553 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1807 ID=mRNA_1807|Name=jgi.p|Trimin1|130548|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_26:151284..151553+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGGTGTACATTCACGGAGGAGGCTGGATAAGCGGGCAAGCACCAATGTA
TGTCCGTGCCTTGACAAACGTCCAAGAAGCGCTCGACTATGTGATCGTAT
ATGTTGAATACCGCTTGGCACCAGAGACCCGATTTCCAGGCGCACTCGCT
GATGTATTTCATGCAGTGCATTGGATTAGTGAGCACATTGCAAGATATGG
GGGCGACAACTTGCGTATAGCATTGGCAGGTGAGAGTGCTGGTGGTAATC
TTGCGATTGCCTTCTCAATG
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protein sequence of jgi.p|Trimin1|130548

>Trimin1|130548|gw1.26.19.1 ID=Trimin1|130548|gw1.26.19.1|Name=jgi.p|Trimin1|130548|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp
LVYIHGGGWISGQAPMYVRALTNVQEALDYVIVYVEYRLAPETRFPGALA
DVFHAVHWISEHIARYGGDNLRIALAGESAGGNLAIAFSM
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mRNA from alignment at Contig_26:151284..151553+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1807 ID=mRNA_1807|Name=jgi.p|Trimin1|130548|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_26:151284..151553+ (Tribonema minus UTEX_B_3156 )
TTGGTGTACATTCACGGAGGAGGCTGGATAAGCGGGCAAGCACCAATGTA TGTCCGTGCCTTGACAAACGTCCAAGAAGCGCTCGACTATGTGATCGTAT ATGTTGAATACCGCTTGGCACCAGAGACCCGATTTCCAGGCGCACTCGCT GATGTATTTCATGCAGTGCATTGGATTAGTGAGCACATTGCAAGATATGG GGGCGACAACTTGCGTATAGCATTGGCAGGTGAGAGTGCTGGTGGTAATC TTGCGATTGCCTTCTCAATG
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Coding sequence (CDS) from alignment at Contig_26:151284..151553+

>mRNA_1807 ID=mRNA_1807|Name=jgi.p|Trimin1|130548|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_26:151284..151553+ (Tribonema minus UTEX_B_3156 )
TTGGTGTACATTCACGGAGGAGGCTGGATAAGCGGGCAAGCACCAATGTA
TGTCCGTGCCTTGACAAACGTCCAAGAAGCGCTCGACTATGTGATCGTAT
ATGTTGAATACCGCTTGGCACCAGAGACCCGATTTCCAGGCGCACTCGCT
GATGTATTTCATGCAGTGCATTGGATTAGTGAGCACATTGCAAGATATGG
GGGCGACAACTTGCGTATAGCATTGGCAGGTGAGAGTGCTGGTGGTAATC
TTGCGATTGCCTTCTCAATG
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