mRNA_17935 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354366
Unique NamemRNA_17935
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354366 vs. uniprot
Match: A0A835Z4A6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A6_9STRA)

HSP 1 Score: 135 bits (339), Expect = 8.520e-38
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 2 
Query:  155 MKAGEGGERCGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDLDRXXXXXXXXXXRSAVPCAEHRAQGAAAARMRSTGGGSGRRCSLRESDWESVMQRCRSAVARMPLRGGRLSS 514
            MKAGEGGERCGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDLDRXXXXXXXXXXRSAVPCAEHRAQGAAAARMRSTGGGSGRRCSLRESDWESVMQRCRSAVARMPLRGGRLSS
Sbjct:    1 MKAGEGGERCGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDLDRXXXXXXXXXXRSAVPCAEHRAQGAAAARMRSTGGGSGRRCSLRESDWESVMQRCRSAVARMPLRGGRLSS 120
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354366 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z4A6_9STRA8.520e-38100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_235contigContig_235:10035..10560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354366|estExt_Genemark1.C_Ctg_2350003
Hectar predicted targeting categoryother localisation
TranscriptId354688
TrackFilteredModels1
ProteinId354366
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354366gene_17935Tribonema minus UTEX_B_3156 geneContig_235 10035..10560 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17935_1exon_17935_1Tribonema minus UTEX_B_3156 exonContig_235 10035..10560 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17935UTR5_17935Tribonema minus UTEX_B_3156 five_prime_UTRContig_235 10035..10188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17935CDS_17935Tribonema minus UTEX_B_3156 CDSContig_235 10189..10551 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17935UTR3_17935Tribonema minus UTEX_B_3156 three_prime_UTRContig_235 10552..10560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354366Trimin1|354366|estExt_Genemark1.C_Ctg_2350003Tribonema minus UTEX_B_3156 polypeptideContig_235 10189..10551 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17935 ID=mRNA_17935|Name=jgi.p|Trimin1|354366|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=526bp|location=Sequence derived from alignment at Contig_235:10035..10560+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGCGGCGGCGGCGCGGTGCGCGGCCGCGGACGCGAGCGCCCCGCTGTCG
CGTTCTAGTGTAGCGGTTTGTCCCCCGGTAGTTCTGGTTTTGTGCGGCGA
TACAGATATGTGGATCGGGCGTCCCTGCTGCGCTCCCTCCGCTGAGCGCA
GCGGATGAAAGCGGGAGAGGGGGGGGAGCGGTGTGGCAGCGGCAGCGGCA
GCAGCGGCGGCGGCGGCGACGGCAGCGGCTGCGGCTGCGTGGGAAGTCCC
GCCGCCGCCTCTGCCGCGCCCGTGTCGCACATGCACATTGGCGATTTAGA
CAGGAGCAGTGCAGCAGCAGCAGCAGCGGCAGCGCGCTCCGCCGTGCCGT
GCGCAGAGCACCGAGCACAGGGTGCCGCCGCCGCGCGCATGCGCAGCACC
GGCGGCGGCAGCGGCCGCCGCTGCTCTCTCCGAGAGAGCGATTGGGAGAG
CGTCATGCAGCGGTGTCGCAGCGCTGTCGCGCGAATGCCGCTGCGGGGCG
GACGGCTCTCGTCTTGATAAGCCGCG
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protein sequence of jgi.p|Trimin1|354366

>Trimin1|354366|estExt_Genemark1.C_Ctg_2350003 ID=Trimin1|354366|estExt_Genemark1.C_Ctg_2350003|Name=jgi.p|Trimin1|354366|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=121bp
MKAGEGGERCGSGSGSSGGGGDGSGCGCVGSPAAASAAPVSHMHIGDLDR
SSAAAAAAAARSAVPCAEHRAQGAAAARMRSTGGGSGRRCSLRESDWESV
MQRCRSAVARMPLRGGRLSS*
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mRNA from alignment at Contig_235:10035..10560+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17935 ID=mRNA_17935|Name=jgi.p|Trimin1|354366|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=526bp|location=Sequence derived from alignment at Contig_235:10035..10560+ (Tribonema minus UTEX_B_3156 )
CGGCGGCGGCGGCGCGGTGCGCGGCCGCGGACGCGAGCGCCCCGCTGTCG
CGTTCTAGTGTAGCGGTTTGTCCCCCGGTAGTTCTGGTTTTGTGCGGCGA
TACAGATATGTGGATCGGGCGTCCCTGCTGCGCTCCCTCCGCTGAGCGCA
GCGGATGAAAGCGGGAGAGGGGGGGGAGCGGTGTGGCAGCGGCAGCGGCA
GCAGCGGCGGCGGCGGCGACGGCAGCGGCTGCGGCTGCGTGGGAAGTCCC
GCCGCCGCCTCTGCCGCGCCCGTGTCGCACATGCACATTGGCGATTTAGA
CAGGAGCAGTGCAGCAGCAGCAGCAGCGGCAGCGCGCTCCGCCGTGCCGT
GCGCAGAGCACCGAGCACAGGGTGCCGCCGCCGCGCGCATGCGCAGCACC
GGCGGCGGCAGCGGCCGCCGCTGCTCTCTCCGAGAGAGCGATTGGGAGAG
CGTCATGCAGCGGTGTCGCAGCGCTGTCGCGCGAATGCCGCTGCGGGGCG
GACGGCTCTCGTCTTGATAAGCCGCG
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Coding sequence (CDS) from alignment at Contig_235:10035..10560+

>mRNA_17935 ID=mRNA_17935|Name=jgi.p|Trimin1|354366|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=363bp|location=Sequence derived from alignment at Contig_235:10035..10560+ (Tribonema minus UTEX_B_3156 )
ATGAAAGCGGGAGAGGGGGGGGAGCGGTGTGGCAGCGGCAGCGGCAGCAG
CGGCGGCGGCGGCGACGGCAGCGGCTGCGGCTGCGTGGGAAGTCCCGCCG
CCGCCTCTGCCGCGCCCGTGTCGCACATGCACATTGGCGATTTAGACAGG
AGCAGTGCAGCAGCAGCAGCAGCGGCAGCGCGCTCCGCCGTGCCGTGCGC
AGAGCACCGAGCACAGGGTGCCGCCGCCGCGCGCATGCGCAGCACCGGCG
GCGGCAGCGGCCGCCGCTGCTCTCTCCGAGAGAGCGATTGGGAGAGCGTC
ATGCAGCGGTGTCGCAGCGCTGTCGCGCGAATGCCGCTGCGGGGCGGACG
GCTCTCGTCTTGA
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