mRNA_17894 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|34801
Unique NamemRNA_17894
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|34801 vs. uniprot
Match: A0A835Z8R3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8R3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.020e-23
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:  451 GTFFWCRCARSCCSGVCLAAAGRCAVMAGPRRCSCAGVLWQCAALAI 591
            GTFFWCRCARSCCSGVCLAAAGRCAVMAGPRRCSCAGVLWQCAALAI
Sbjct:  103 GTFFWCRCARSCCSGVCLAAAGRCAVMAGPRRCSCAGVLWQCAALAI 149
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|34801 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z8R3_9STRA5.020e-23100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_188contigContig_188:271700..273942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|34801|CE34800_18
Hectar predicted targeting categorymitochondrion
TranscriptId35123
TrackFilteredModels1
ProteinId34801
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|34801gene_17894Tribonema minus UTEX_B_3156 geneContig_188 271700..273942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|34801Trimin1|34801|CE34800_18Tribonema minus UTEX_B_3156 polypeptideContig_188 271720..272169 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17894_3exon_17894_3Tribonema minus UTEX_B_3156 exonContig_188 271700..272176 -
exon_17894_2exon_17894_2Tribonema minus UTEX_B_3156 exonContig_188 273209..273289 -
exon_17894_1exon_17894_1Tribonema minus UTEX_B_3156 exonContig_188 273887..273942 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17894UTR3_17894Tribonema minus UTEX_B_3156 three_prime_UTRContig_188 271700..271719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17894CDS_17894Tribonema minus UTEX_B_3156 CDSContig_188 271720..272169 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17894UTR5_17894Tribonema minus UTEX_B_3156 five_prime_UTRContig_188 273887..273942 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17894 ID=mRNA_17894|Name=jgi.p|Trimin1|34801|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=614bp|location=Sequence derived from alignment at Contig_188:271700..273942- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGACATGTTGGAGAAGCAGTCGCACCACCAGCGCCATCTCTCGGCGCAC
GTGCCGGGCATGATGGGGCGCGGGCAGCGCGCCAACTTCCACGAGCTCTC
CGCTCTCAGCGCCGAGTTCCACGCCGCTGGGTCAGGGCAGCTCAATGGCG
GCGGCATGCTTGCGTCGTTCGGCCGCAGCGTCTCCATCGCGACGTTCATG
CCGACGCACGGCGCGGCGGCGGCGGCGGTGGAGGCAGCGGCGGCGGCGGC
TGCGGCGGCGATCGCCGGCGGCTTTGCGGGCCTCACCATTGACGGCAGCG
AGGACTCGTCGAGCAGCGCTGCTGCTGCTGCGGCGGCGGCGGCAGCAGCG
CCGATGTCGCCGATCCACGCCGCCGCCACCATCACCGACTACTTCAAGGC
GATCGAGGAGGGCGACGAGGAGAACGAGGACGGCATCTTCTTCTGAGGAA
GGAACGTTCTTCTGGTGTCGTTGTGCGCGAAGCTGTTGTTCCGGGGTCTG
TCTGGCTGCTGCCGGGAGGTGTGCTGTGATGGCTGGTCCCAGGCGGTGTA
GTTGCGCTGGCGTGCTGTGGCAGTGCGCGGCGCTTGCGATCTAACAGATG
GCAGCGATGCGCCG
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protein sequence of jgi.p|Trimin1|34801

>Trimin1|34801|CE34800_18 ID=Trimin1|34801|CE34800_18|Name=jgi.p|Trimin1|34801|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=150bp
MAAACLRRSAAASPSRRSCRRTARRRRRWRQRRRRLRRRSPAALRASPLT
AARTRRAALLLLRRRRQQRRCRRSTPPPPSPTTSRRSRRATRRTRTASSS
EEGTFFWCRCARSCCSGVCLAAAGRCAVMAGPRRCSCAGVLWQCAALAI*
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mRNA from alignment at Contig_188:271700..273942-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17894 ID=mRNA_17894|Name=jgi.p|Trimin1|34801|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2243bp|location=Sequence derived from alignment at Contig_188:271700..273942- (Tribonema minus UTEX_B_3156 )
GCGACATGTTGGAGAAGCAGTCGCACCACCAGCGCCATCTCTCGGCGCAC
GTGCCGGTAAGCCGCGCGCAACGTTGGCCCACGACGGGAGAAGCAGACCT
TCTGGTTGCCATGTTTGGGCGGGTATCAAGCTAGGGCTAGGTTTTGGCTC
AGGGGAACAGTAGGGTGTTGGTTAGCTTTAGGGAAGTTTGAGTTTGAGGA
GCGGTCGCACCACCAGCGCCGACTCGTGACGCACGTCCCGGTGAGCCGCA
CGCAAAGTTTAGCTCTGAACAGCGAATGCAGACCTCATTGCAGCGTGATG
CTTGGGCTGGACCGTGTTAGGATGAGATGTAGGGTTGAGAGTTGTGGAGC
GGTCACATACCTGTTGGTGCACACCCCGTTAAGTCGCATAGTCAGTGCAG
GTCTCAACTTCAAGTGCAGAACGCACCGCATCGCGAACTCTCGGCTGCTG
CCAATTGAAGGCGTGCACACGCGCGCCTGTTGCCGCAGTCTGAGCGAAGC
TGCAACTTGAGCCTTCCCCCCTCAGTTTGCACTGTTGCATGCAGAGCCAC
AGACCAAGTGCAACACCTCGGCGCATATAACTACACGAGCAGCACCGCTC
CGCACTAAAGCGAACCCTGCTGCTGTTGCTGTCACCACGCGCTCGCGTTG
CAGGGCATGATGGGGCGCGGGCAGCGCGCCAACTTCCACGAGCTCTCCGC
TCTCAGCGCCGAGTTCCACGCCGCTGGGTCAGGGGTACGTATCTGTACGA
CTAGCAATATCATAGGGCATCAGCCCCCACCGAGTCGTCGTTCGACGACA
CTCATTCAAAGCATGTGGTCTTGCCCTGGCGCGGTTACAGGCTTGCTGAC
AGTGAGCATCAGGCCCCTACATAGCACATGACTTCGGTTGCCATGTGCGT
CGCGCAATCCGTCCGCTAAGTGTTTTGCGATCTTAGGAAGTGAACCGGGG
CGGCGTTCTGTGAATGGCAGCTCTCTACATGTCCCTGAGAAACGAGCAGT
GTGGTAGCCAGTTGCTCCTTGGTGTGCAGGTCGTTGTTGGACGGCTGCAG
TGCTTGGCGAAGCTTCCCAACCTCATATGTTGCGATGATTGCAATGCTAG
AGTACATCGACGTCGGAGTTCTCCTCGGAGGAAGTGTGATGTGACGGAAC
CCCACTGCCTCCCCGTCAGCCACGCCTCGGCGCTTCGATACACCTTGTGC
TACCTCCCTCTTGGGCCAGCGCGACATGCAGAATACATGCACAGACTGCG
CGTACTGCGCGCTGGGTGTCATTGGCTGCCGGCAGCTGCGTGGCGCGATC
CGCACAATTCGCGCTGATGCCGCCGCCCGTCGGCTCTCACGCACCCCGAT
GGTCAACTCCTTTGCTGCGCCATGTGAACCCATGCGCTGTCAACCGTCGC
TGTCAATCCTCGCTGTCACCCTCGGTCCCCATAAACTCTGATACGCAACT
CCATGCTGTGCCATGTGAACACATGTGCTGTCAACCCTCGCTGCCAACCC
ACAATTCCTACAAACCCCGATAGTCAATTCCACGCGTGCCGTGTGAACGG
GCCTTTGACGCCCGTCCGCCCGTCCGCGGCAGCTCGCTTCCTACATGACT
CTGATCACTGACTTCATGCAATGCCATCTGATCGTGCCCCCGACGCCCCG
TGAACACAGGCGCTATCAACCCTCGCTGTCAACCCTCAATGCTGACAAAC
TCTGCTAGTCGACTACATGCTGCGCTGTCTGAACGTGCCCCGGTGCCTGC
TTGTCTGCTGCCGCAGCAGCTCAATGGCGGCGGCATGCTTGCGTCGTTCG
GCCGCAGCGTCTCCATCGCGACGTTCATGCCGACGCACGGCGCGGCGGCG
GCGGCGGTGGAGGCAGCGGCGGCGGCGGCTGCGGCGGCGATCGCCGGCGG
CTTTGCGGGCCTCACCATTGACGGCAGCGAGGACTCGTCGAGCAGCGCTG
CTGCTGCTGCGGCGGCGGCGGCAGCAGCGCCGATGTCGCCGATCCACGCC
GCCGCCACCATCACCGACTACTTCAAGGCGATCGAGGAGGGCGACGAGGA
GAACGAGGACGGCATCTTCTTCTGAGGAAGGAACGTTCTTCTGGTGTCGT
TGTGCGCGAAGCTGTTGTTCCGGGGTCTGTCTGGCTGCTGCCGGGAGGTG
TGCTGTGATGGCTGGTCCCAGGCGGTGTAGTTGCGCTGGCGTGCTGTGGC
AGTGCGCGGCGCTTGCGATCTAACAGATGGCAGCGATGCGCCG
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Coding sequence (CDS) from alignment at Contig_188:271700..273942-

>mRNA_17894 ID=mRNA_17894|Name=jgi.p|Trimin1|34801|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=450bp|location=Sequence derived from alignment at Contig_188:271700..273942- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGGCATGCTTGCGTCGTTCGGCCGCAGCGTCTCCATCGCGACG
TTCATGCCGACGCACGGCGCGGCGGCGGCGGCGGTGGAGGCAGCGGCGGC
GGCGGCTGCGGCGGCGATCGCCGGCGGCTTTGCGGGCCTCACCATTGACG
GCAGCGAGGACTCGTCGAGCAGCGCTGCTGCTGCTGCGGCGGCGGCGGCA
GCAGCGCCGATGTCGCCGATCCACGCCGCCGCCACCATCACCGACTACTT
CAAGGCGATCGAGGAGGGCGACGAGGAGAACGAGGACGGCATCTTCTTCT
GAGGAAGGAACGTTCTTCTGGTGTCGTTGTGCGCGAAGCTGTTGTTCCGG
GGTCTGTCTGGCTGCTGCCGGGAGGTGTGCTGTGATGGCTGGTCCCAGGC
GGTGTAGTTGCGCTGGCGTGCTGTGGCAGTGCGCGGCGCTTGCGATCTAA
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