mRNA_17874 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|48437
Unique NamemRNA_17874
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|48437 vs. uniprot
Match: A0A836CJ56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ56_9STRA)

HSP 1 Score: 265 bits (678), Expect = 1.120e-87
Identity = 153/162 (94.44%), Postives = 154/162 (95.06%), Query Frame = -1 
Query:  212 MPTVHSTLIALFNTARPTFNSMNAAVIAHDTWHIRRRHGLPIHQLGLLXXXXXXXXXXXXXXXXXXXXXFPESFEVLLELLHIHAKVHRLLRVLFPFLLQHLLHIIHFDLHSVNLALHLGNGLRDFAQLCLDAIAAAACWXXXXXCWWCGRSLGLGRHAAGC 697
            MPTVHSTLIALFNTARPTFN MNAAVIAHDTWHIRRRHGLPIHQLGLLXXXXXXXXXXXXXX       FPESFEVLLELLHIHAKVHRLLRVLFPFLLQHLLHIIHFDLHS+NLALHLGNGLRDFAQLCLDAIAAAACWXXXXXCWWCGRSLGLGRHAAGC
Sbjct:    1 MPTVHSTLIALFNTARPTFNGMNAAVIAHDTWHIRRRHGLPIHQLGLLXXXXXXXXXXXXXX-------FPESFEVLLELLHIHAKVHRLLRVLFPFLLQHLLHIIHFDLHSINLALHLGNGLRDFAQLCLDAIAAAACWXXXXXCWWCGRSLGLGRHAAGC 155
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BLAST of jgi.p|Trimin1|48437 vs. uniprot
Match: A0A835Z167_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z167_9STRA)

HSP 1 Score: 174 bits (442), Expect = 5.640e-52
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 2 
Query:  224 MPPKSQTPTAPPAAAPATPAGSSCDGVEAELSKVAQAITXXXXXXXXXXXXXXXXEKVLQEEGKQNPEQPVYLSMNVQELKEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDRQAMPSPDVPGVMSNDCRVHAVESWPRGVE 664
            MPPKSQTPTAPPAAAPATPAGSSCDGVEAELSKVAQAITXXXXXXXXXXXXXXXX KVLQEEGKQNPEQPVYLSMNVQELKEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDRQAMPSPDVPGVMSNDCRVHAVESWPRGVE
Sbjct:    1 MPPKSQTPTAPPAAAPATPAGSSCDGVEAELSKVAQAITXXXXXXXXXXXXXXXXXKVLQEEGKQNPEQPVYLSMNVQELKEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDRQAMPSPDVPGVMSNDCRVHAVESWPRGVE 147
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BLAST of jgi.p|Trimin1|48437 vs. uniprot
Match: A0A835ZAP0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP0_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.470e-31
Identity = 105/128 (82.03%), Postives = 106/128 (82.81%), Query Frame = 2 
Query:  224 MPPKSQTPTAPPAAAPATPAGSSCDGVEAELSKVAQAITXXXXXXXXXXXXXXXXEKVLQEEGKQNPEQPVYLSMNVQELKEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDRQAMPSPDVPG 607
            MPPKSQTPTAPPAAAPATPAGSS DGVEAELS VAQAI                 EKVLQEEGK+NPEQPVYLSMNVQELKEHL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX DRQAMPSPDVPG
Sbjct:    1 MPPKSQTPTAPPAAAPATPAGSSYDGVEAELSIVAQAIIKVEGQIDAVEIKVNDVEKVLQEEGKRNPEQPVYLSMNVQELKEHLKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRQAMPSPDVPG 128
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BLAST of jgi.p|Trimin1|48437 vs. uniprot
Match: A0A835ZJ20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ20_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.650e-28
Identity = 111/127 (87.40%), Postives = 111/127 (87.40%), Query Frame = 2 
Query:  224 MPPKSQTPTAPPAAAPATPAGSSCDGVEAELSKVAQAITXXXXXXXXXXXXXXXXEKVLQEEGKQNPEQPVYLSMNVQELKEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDRQAMPSPDVP 604
            MPPKSQTPTAPPAAAPATPAGSS DGVEAELSKVAQAIT     XXXXXXXXX  EKVLQEEGKQNPEQPVYLSMNVQELKEH XXXXXXXXXXXXXXXXXXXXXXXXX       DRQAMPSPDVP
Sbjct:    1 MPPKSQTPTAPPAAAPATPAGSSYDGVEAELSKVAQAITKVEGQXXXXXXXXXDVEKVLQEEGKQNPEQPVYLSMNVQELKEHXXXXXXXXXXXXXXXXXXXXXXXXXX-------DRQAMPSPDVP 120
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|48437 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CJ56_9STRA1.120e-8794.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z167_9STRA5.640e-5299.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAP0_9STRA3.470e-3182.03Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZJ20_9STRA5.650e-2887.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_246contigContig_246:103749..105631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|48437|CE48436_38
Hectar predicted targeting categoryother localisation
TranscriptId48759
TrackFilteredModels1
ProteinId48437
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|48437gene_17874Tribonema minus UTEX_B_3156 geneContig_246 103749..105631 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17874_1exon_17874_1Tribonema minus UTEX_B_3156 exonContig_246 103749..103932 +
exon_17874_2exon_17874_2Tribonema minus UTEX_B_3156 exonContig_246 105077..105631 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17874UTR5_17874Tribonema minus UTEX_B_3156 five_prime_UTRContig_246 103749..103932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17874CDS_17874Tribonema minus UTEX_B_3156 CDSContig_246 105116..105559 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17874UTR3_17874Tribonema minus UTEX_B_3156 three_prime_UTRContig_246 105560..105631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|48437Trimin1|48437|CE48436_38Tribonema minus UTEX_B_3156 polypeptideContig_246 105116..105559 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17874 ID=mRNA_17874|Name=jgi.p|Trimin1|48437|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=739bp|location=Sequence derived from alignment at Contig_246:103749..105631+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TAGGAATAGCACAGAGTGCCACCAGCAGCAGCAGCACAGAGCCCACCACC
AGCAGCACTACAGCACAGCAGCCGCACAGCAGCCGCACAGCATATGATAC
AGCAGGCAGCGGAGCAGCTGGCACAGCAGCAGCAGCAGCAGCCAGCGGGC
AGCGGGGTGTAACAGCAGCCGCAGTAGCACAAAGGGTTAGAGTCCTGGGT
GCTCGACATCAACAGCCTGCAGCATGCCGCCCAAGTCCCAAACTCCGACC
GCACCACCAGCAGCAGCACCAGCAACACCAGCAGGCAGCAGCTGCGATGG
CGTCGAGGCAGAGCTGAGCAAAGTCGCGCAGGCCATTACCAAGGTGGAGG
GCCAAATTGACGCTGTGGAGATCAAAGTGAATGATGTGGAGAAGGTGCTG
CAGGAGGAAGGGAAACAGAACCCGGAGCAGCCGGTGTACCTTAGCATGAA
TGTGCAGGAGCTCAAGGAGCACCTCAAAGCTCTCAGGAAAAAGGAGGAGC
AGCTGCGTAAGAAGGAGGAGCAGCTGCGTAAGAAGGAGGAGCAGCTGCGT
GAGGAGAAGGCCAAGCTGATGGATAGGCAGGCCATGCCGTCTCCTGATGT
GCCAGGTGTCATGAGCAATGACTGCCGCGTTCATGCTGTTGAAAGTTGGC
CGCGCGGTGTTGAATAATGCTATAAGGGTTGAGTGAACGGTAGGCATGAA
CGCCACTACGACGCGCCGCAGTTATGCAACTATTTGACC
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protein sequence of jgi.p|Trimin1|48437

>Trimin1|48437|CE48436_38 ID=Trimin1|48437|CE48436_38|Name=jgi.p|Trimin1|48437|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=148bp
MPPKSQTPTAPPAAAPATPAGSSCDGVEAELSKVAQAITKVEGQIDAVEI
KVNDVEKVLQEEGKQNPEQPVYLSMNVQELKEHLKALRKKEEQLRKKEEQ
LRKKEEQLREEKAKLMDRQAMPSPDVPGVMSNDCRVHAVESWPRGVE*
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mRNA from alignment at Contig_246:103749..105631+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17874 ID=mRNA_17874|Name=jgi.p|Trimin1|48437|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1883bp|location=Sequence derived from alignment at Contig_246:103749..105631+ (Tribonema minus UTEX_B_3156 )
TAGGAATAGCACAGAGTGCCACCAGCAGCAGCAGCACAGAGCCCACCACC
AGCAGCACTACAGCACAGCAGCCGCACAGCAGCCGCACAGCATATGATAC
AGCAGGCAGCGGAGCAGCTGGCACAGCAGCAGCAGCAGCAGCCAGCGGGC
AGCGGGGTGTAACAGCAGCCGCAGTAGCACAAAGGTAAGCAATAGCACAG
CACAAAGCAAACCATAGCGAACATGGAGCTCCAGTAGCAGCAGTAGCAAA
CAAAGCCTTCAGGAGCACAGATACACACATTCAGCGCACGCTGCGCAGCA
GTAAGCAGGACGGGGCAGCAGGCAGTACCACACTGTAAGCTGCTGCCTGC
CTGACCATGCCTTACGAACTTGCAGGCGGAGACGGCTTGTCCATGCGCAG
GTGTGACTCTGCGATTAAATGGCTGAAGGAGGAATACCCTTGAGGTCACA
TGGCAAAAAAGCCAGGCAAAGTCATAGCAGTTGTCCGTCTTGCTGGTCCT
TTACTCTTGCGTGCTTGCATACAAGCGAACGTAGCTTTGTGCACAAAGTG
CAGTGGCGGGAAGCACAGTCAGATGTGCGAACGCTTTTTTGTGCACTACT
TTATAGTTCGACATTTCCTCCCCTCAGCGGTCGTGTAGAAATATTTCACC
TTGCACAGAAGTACGTTTAAGGCCCTGCTGACCGAATCGCAAATGATTAA
GTTCAGGCTGACTTTTCTTCGTGACTTTGACACCTTATGGAGCAGTTCAG
ATCTCCCCCTGAGGGCCCTCTCACATCCCAAACAGGTGCACATCCGGCAA
GTGGGAGTGTCGCTTACTACAGCTGGAACCTCTGCACGCCGACACTCACG
TTACGCACTGCCTTGAACGCCAATGCAGGACAGATACGTTGTGCGCTGTA
ACAATGGGCACATTCTGCTCTGTCCATTGAGCCTGCTGCAGGCAAGAGGA
TTCTGCCGCGAACGCAAATCAGTAATTGCAGCTGAGCCAAGCGAATGACT
ACCACAACAGTCGGTACGAGCACGTTCAGGGGTTGACCATAAGATCTTGT
GATGGCCATGTAGGGAATCAGTCTGATGATTCAGTATTGCAGCAGTGTCA
TGCAGGTGCTCTGTGAATTTTGAAAACCACTTGCAGGCACCGCGAGCGTG
GGAGCCACAGGCGAACAGAGGAAACAGGCAGTGCAAATGGTTTAGGATTG
GCCCGGAGATAAGCTGACAGGCAGCTCTACAATGGTCTTCTGAGTGCTCA
TGCCTACTTGTAGCCACACTGATGTTGTCGTCGGATTCTTACACTGTCCT
GCTTGCCTGTCCACTCCTGCTGAGACAGGGTTAGAGTCCTGGGTGCTCGA
CATCAACAGCCTGCAGCATGCCGCCCAAGTCCCAAACTCCGACCGCACCA
CCAGCAGCAGCACCAGCAACACCAGCAGGCAGCAGCTGCGATGGCGTCGA
GGCAGAGCTGAGCAAAGTCGCGCAGGCCATTACCAAGGTGGAGGGCCAAA
TTGACGCTGTGGAGATCAAAGTGAATGATGTGGAGAAGGTGCTGCAGGAG
GAAGGGAAACAGAACCCGGAGCAGCCGGTGTACCTTAGCATGAATGTGCA
GGAGCTCAAGGAGCACCTCAAAGCTCTCAGGAAAAAGGAGGAGCAGCTGC
GTAAGAAGGAGGAGCAGCTGCGTAAGAAGGAGGAGCAGCTGCGTGAGGAG
AAGGCCAAGCTGATGGATAGGCAGGCCATGCCGTCTCCTGATGTGCCAGG
TGTCATGAGCAATGACTGCCGCGTTCATGCTGTTGAAAGTTGGCCGCGCG
GTGTTGAATAATGCTATAAGGGTTGAGTGAACGGTAGGCATGAACGCCAC
TACGACGCGCCGCAGTTATGCAACTATTTGACC
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Coding sequence (CDS) from alignment at Contig_246:103749..105631+

>mRNA_17874 ID=mRNA_17874|Name=jgi.p|Trimin1|48437|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=444bp|location=Sequence derived from alignment at Contig_246:103749..105631+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCCAAGTCCCAAACTCCGACCGCACCACCAGCAGCAGCACCAGC
AACACCAGCAGGCAGCAGCTGCGATGGCGTCGAGGCAGAGCTGAGCAAAG
TCGCGCAGGCCATTACCAAGGTGGAGGGCCAAATTGACGCTGTGGAGATC
AAAGTGAATGATGTGGAGAAGGTGCTGCAGGAGGAAGGGAAACAGAACCC
GGAGCAGCCGGTGTACCTTAGCATGAATGTGCAGGAGCTCAAGGAGCACC
TCAAAGCTCTCAGGAAAAAGGAGGAGCAGCTGCGTAAGAAGGAGGAGCAG
CTGCGTAAGAAGGAGGAGCAGCTGCGTGAGGAGAAGGCCAAGCTGATGGA
TAGGCAGGCCATGCCGTCTCCTGATGTGCCAGGTGTCATGAGCAATGACT
GCCGCGTTCATGCTGTTGAAAGTTGGCCGCGCGGTGTTGAATAA
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