mRNA_17870 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A836CG12_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG12_9STRA) HSP 1 Score: 227 bits (579), Expect = 1.250e-75 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 Query: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF Sbjct: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 108
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A835Z2I1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2I1_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.040e-45 Identity = 72/108 (66.67%), Postives = 81/108 (75.00%), Query Frame = 1 Query: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324 CLQRWKKVLRPGLRKG+WT EDA+LAR VA NW + + RTS+QCRERW+HHLDP +KR Y+ ED AI A H + GNRW QIAL VPGRTENSIKARF Sbjct: 37 CLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 144
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A835YSN1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN1_9STRA) HSP 1 Score: 145 bits (367), Expect = 4.110e-43 Identity = 67/108 (62.04%), Postives = 80/108 (74.07%), Query Frame = 1 Query: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324 CLQRWKKVLRPGL KG WT EED L LV +G NWG +A+ + +RT KQCRERWQHHL+P ++RG YS ED AI AG+ R GNRW+ I DVPGRT SI++R+ Sbjct: 15 CLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 122
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI) HSP 1 Score: 151 bits (381), Expect = 5.320e-43 Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 1 Query: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKAR 321 CLQRWKKVLRPGL KGQW EEDA L +L A FKNWGVL+ M+ RTSKQCRERW HHLDP+I +GAY+ ED I A LGNRWSQIA +PGRTENSIK R Sbjct: 144 CLQRWKKVLRPGLVKGQWDAEEDAALMKL-ATAPFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIR 249
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA) HSP 1 Score: 149 bits (376), Expect = 9.970e-42 Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 1 Query: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324 CLQRWKKVL+PGL KGQW+ EDAKL LV +G FKNWG LA+ M RTSKQCRERW HHLDP++K+G Y+ ED I + LGN+WS+IA +PGRTEN++K R+ Sbjct: 65 CLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKG-FKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRW 171
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A6H5KJU6_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU6_9PHAE) HSP 1 Score: 152 bits (384), Expect = 5.070e-41 Identity = 74/107 (69.16%), Postives = 83/107 (77.57%), Query Frame = 1 Query: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKAR 321 CLQRWKKVLRPGL KGQW EEDA L +L A FKNWGVL+ M+ RTSKQCRERW HHLDP+I +GAY+ ED+ I A+LGNRWSQIA +PGRTENSIK R Sbjct: 151 CLQRWKKVLRPGLVKGQWDAEEDAALMKL-ATAPFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDKIIIETQAKLGNRWSQIAARLPGRTENSIKIR 256
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM) HSP 1 Score: 134 bits (338), Expect = 4.230e-38 Identity = 66/108 (61.11%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324 CLQRW KVL PGL KG W +ED L LVA G KNWG +A+ + RTSKQCRERW +HLDP+I RG YSA ED I ARLGNRWS IA +PGRTE+++K R+ Sbjct: 47 CLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGR-KNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 153
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A835Z3R6_9STRA (Homeodomain-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R6_9STRA) HSP 1 Score: 134 bits (336), Expect = 5.800e-38 Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALD-VPGRTENSIKARF 324 CLQRWKKVLRP L+KG WT EEDA L V G KNWG +A H+ +RT +QC+ RWQHHLDP IKRG+++AAED I G R GNRW IA +PGR + +I+ R+ Sbjct: 47 CLQRWKKVLRPDLKKGDWTPEEDALLTDTVQSGTCKNWGKVALHLPNRTYRQCQLRWQHHLDPDIKRGSFTAAEDALILEGFKRFGNRWKHIARKHLPGRIDYTIRGRY 155
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A662WMC1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMC1_9STRA) HSP 1 Score: 135 bits (340), Expect = 8.220e-38 Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 1 Query: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324 CLQRW KVL PGL KG W+ ED L RLVA KNWG +A+ + RTSKQCRERW +HLDPAI RGAYS ED I ARLGNRWS IA +PGRTE+++K R+ Sbjct: 43 CLQRWTKVLAPGLVKGHWSPHEDELLRRLVA-ADQKNWGDVAAKIPGRTSKQCRERWHNHLDPAIVRGAYSPEEDRLILEAQARLGNRWSVIAAMLPGRTEDAVKIRW 149
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A6T7CFM7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7CFM7_9STRA) HSP 1 Score: 131 bits (330), Expect = 4.070e-37 Identity = 64/110 (58.18%), Postives = 75/110 (68.18%), Query Frame = 1 Query: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKN--WGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324 CL RW KVLRPGLRKG WT EED + LVA+ G W +A+ + R KQCRERW +HLDP IKR A+S ED A+ H +LGNRWSQIA +PGRTEN +K RF Sbjct: 1 CLHRWSKVLRPGLRKGPWTEEEDNIVRSLVAQHGVGKIKWSQVAAQLPGRLGKQCRERWLNHLDPGIKRDAWSHHEDLALHEAHRQLGNRWSQIAGRLPGRTENGVKNRF 110 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17870 ID=mRNA_17870|Name=jgi.p|Trimin1|137951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_246:73791..74628- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGCCTGCAGCGCTGGAAGAAGGTGCTGCGCCCGGGCCTGCGCAAGGGGCAback to top protein sequence of jgi.p|Trimin1|137951 >Trimin1|137951|gw1.246.5.1 ID=Trimin1|137951|gw1.246.5.1|Name=jgi.p|Trimin1|137951|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSback to top mRNA from alignment at Contig_246:73791..74628- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17870 ID=mRNA_17870|Name=jgi.p|Trimin1|137951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=838bp|location=Sequence derived from alignment at Contig_246:73791..74628- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_246:73791..74628- >mRNA_17870 ID=mRNA_17870|Name=jgi.p|Trimin1|137951|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_246:73791..74628- (Tribonema minus UTEX_B_3156 )back to top |