mRNA_17866 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181223
Unique NamemRNA_17866
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|181223 vs. uniprot
Match: A0A836CGL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL7_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.340e-33
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 1 
Query:    1 MSWVLLHTLYNTAHPGPLSGAPTLAGPLSLHGAAPRLPECFGGSSALTSLRLTTCDSITSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSALACTAAATCXXXXXXXXXXXXXXXXCGCYALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMALRNNTAALVCKSWGSGIFAVVP 951
            MSWVLLHTLYNTAHPGPLSGAPTLAGPLSLHGAAPRLPECFGGSSALTSLRLTTCDSITSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSALACTAAATCXXXXXXXXXXXXXXXXCGCYALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMALRNNTAALVCKSWGSGIFAVVP
Sbjct:    1 MSWVLLHTLYNTAHPGPLSGAPTLAGPLSLHGAAPRLPECFGGSSALTSLRLTTCDSITSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSALACTAAATCXXXXXXXXXXXXXXXXCGCYALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMALRNNTAALVCKSWGSGIFAVVP 317
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181223 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CGL7_9STRA3.340e-33100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_246contigContig_246:39905..41069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181223|e_gw1.246.28.1
Hectar predicted targeting categoryother localisation
TranscriptId181545
TrackFilteredModels1
ProteinId181223
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181223gene_17866Tribonema minus UTEX_B_3156 geneContig_246 39905..41069 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17866_1exon_17866_1Tribonema minus UTEX_B_3156 exonContig_246 39905..40487 +
exon_17866_2exon_17866_2Tribonema minus UTEX_B_3156 exonContig_246 40699..41069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17866CDS_17866Tribonema minus UTEX_B_3156 CDSContig_246 39905..40487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181223Trimin1|181223|e_gw1.246.28.1Tribonema minus UTEX_B_3156 polypeptideContig_246 39905..41069 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17866 ID=mRNA_17866|Name=jgi.p|Trimin1|181223|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=954bp|location=Sequence derived from alignment at Contig_246:39905..41069+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTGGGTGCTGCTGCACACTCTTTATAACACAGCACACCCGGGCCC
CCTCTCCGGTGCGCCGACGCTGGCGGGCCCGCTCTCTCTGCACGGTGCGG
CGCCCCGCCTCCCGGAGTGCTTCGGTGGATCATCAGCGTTGACGTCGCTC
CGCCTCACGACGTGTGACAGCATCACCAGCCTGCCAGACAGCATTGGCGG
CTTGACTGCGCTGACAACGTTGACGCTGGACATCTGCACGCAGCTCACGG
GCCTGCCGGACAGTATCAGCGGCCTGACGCGGCTGACCGCGCTATCGCTG
CATGATTGCTCGCGGCTGACGCGCCTGCCCAACAGCATCGGCGAGCTCAC
AGCGCTGGTGACGTTGGACCTGAGCTACTGCGCGGCACTCGTTGGCGTGC
CTGACAGCATTGGCGATCTTGCGGCGCTGACGACGCTCGAGCTGTGCTAT
TGCGACAGCCTTGAAGCACTGCCAGACGCCATCGGCAATCTGGCGGCGCT
GAGGACGCTGGAACTTGCGTATTGCAGATCTCTGCAGAGCGTGCCAGCCA
GCATCGGCGCACTGACGCAGCTGAGTGCGCTCGCCTGCACAGCTGCCGCC
ACGTGCCTGCCGGACGCGATAGGCGAGCTGCGCGCGCTGACGCTGCTGGA
CCTGTGCGGCTGCTATGCGCTGACGCGGCTGCCCGACAGCATCGGCGGCC
TCCGCGCGCTGACGCAGCTGAAGATGTTCGGATGCGAGTCCCTCACAGCC
CTGCCGGAGTCGTACGGCGATCTGGCGGCGCTGACGGACCTGGACCTGCA
TGACTGCGGAGCGCTGACGCGGCTGCCGGACAGCATCACTCGGCTGGCGG
CGCTTCAGCGCGTACGCATCGTCAACTGCATGGCGCTGCGGAACAACACC
GCCGCGCTCGTTTGTAAGTCTTGGGGATCCGGCATCTTTGCTGTCGTCCC
CTGA
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protein sequence of jgi.p|Trimin1|181223

>Trimin1|181223|e_gw1.246.28.1 ID=Trimin1|181223|e_gw1.246.28.1|Name=jgi.p|Trimin1|181223|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=318bp
MSWVLLHTLYNTAHPGPLSGAPTLAGPLSLHGAAPRLPECFGGSSALTSL
RLTTCDSITSLPDSIGGLTALTTLTLDICTQLTGLPDSISGLTRLTALSL
HDCSRLTRLPNSIGELTALVTLDLSYCAALVGVPDSIGDLAALTTLELCY
CDSLEALPDAIGNLAALRTLELAYCRSLQSVPASIGALTQLSALACTAAA
TCLPDAIGELRALTLLDLCGCYALTRLPDSIGGLRALTQLKMFGCESLTA
LPESYGDLAALTDLDLHDCGALTRLPDSITRLAALQRVRIVNCMALRNNT
AALVCKSWGSGIFAVVP*
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mRNA from alignment at Contig_246:39905..41069+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17866 ID=mRNA_17866|Name=jgi.p|Trimin1|181223|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1165bp|location=Sequence derived from alignment at Contig_246:39905..41069+ (Tribonema minus UTEX_B_3156 )
ATGTCCTGGGTGCTGCTGCACACTCTTTATAACACAGCACACCCGGGCCC
CCTCTCCGGTGCGCCGACGCTGGCGGGCCCGCTCTCTCTGCACGGTGCGG
CGCCCCGCCTCCCGGAGTGCTTCGGTGGATCATCAGCGTTGACGTCGCTC
CGCCTCACGACGTGTGACAGCATCACCAGCCTGCCAGACAGCATTGGCGG
CTTGACTGCGCTGACAACGTTGACGCTGGACATCTGCACGCAGCTCACGG
GCCTGCCGGACAGTATCAGCGGCCTGACGCGGCTGACCGCGCTATCGCTG
CATGATTGCTCGCGGCTGACGCGCCTGCCCAACAGCATCGGCGAGCTCAC
AGCGCTGGTGACGTTGGACCTGAGCTACTGCGCGGCACTCGTTGGCGTGC
CTGACAGCATTGGCGATCTTGCGGCGCTGACGACGCTCGAGCTGTGCTAT
TGCGACAGCCTTGAAGCACTGCCAGACGCCATCGGCAATCTGGCGGCGCT
GAGGACGCTGGAACTTGCGTATTGCAGATCTCTGCAGAGCGTGCCAGCCA
GCATCGGCGCACTGACGCAGCTGAGTGCGCTCGGTCTGGCGTGCCTGGAT
GCTAGAGCGCTGCTGCCCAGCTTCCGCTGCCTCGCGGCGCTGACGGGCCT
CTGCCTCTCCCGCACAGATGCTGAGCGCTTCCCAGCCGAGTGCATTGGCG
AGATGACGGCGCTGCGGAAGCTGTACCTGGACGCTTCGCAGCTCACTGCG
GTGCCGGAGGGCGTGTGCGCACTGGCGTCGCTGACGGACCTCAGCCTGCA
CAGCTGCCGCCACGTGCCTGCCGGACGCGATAGGCGAGCTGCGCGCGCTG
ACGCTGCTGGACCTGTGCGGCTGCTATGCGCTGACGCGGCTGCCCGACAG
CATCGGCGGCCTCCGCGCGCTGACGCAGCTGAAGATGTTCGGATGCGAGT
CCCTCACAGCCCTGCCGGAGTCGTACGGCGATCTGGCGGCGCTGACGGAC
CTGGACCTGCATGACTGCGGAGCGCTGACGCGGCTGCCGGACAGCATCAC
TCGGCTGGCGGCGCTTCAGCGCGTACGCATCGTCAACTGCATGGCGCTGC
GGAACAACACCGCCGCGCTCGTTTGTAAGTCTTGGGGATCCGGCATCTTT
GCTGTCGTCCCCTGA
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Coding sequence (CDS) from alignment at Contig_246:39905..41069+

>mRNA_17866 ID=mRNA_17866|Name=jgi.p|Trimin1|181223|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=954bp|location=Sequence derived from alignment at Contig_246:39905..41069+ (Tribonema minus UTEX_B_3156 )
ATGTCCTGGGTGCTGCTGCACACTCTTTATAACACAGCACACCCGGGCCC
CCTCTCCGGTGCGCCGACGCTGGCGGGCCCGCTCTCTCTGCACGGTGCGG
CGCCCCGCCTCCCGGAGTGCTTCGGTGGATCATCAGCGTTGACGTCGCTC
CGCCTCACGACGTGTGACAGCATCACCAGCCTGCCAGACAGCATTGGCGG
CTTGACTGCGCTGACAACGTTGACGCTGGACATCTGCACGCAGCTCACGG
GCCTGCCGGACAGTATCAGCGGCCTGACGCGGCTGACCGCGCTATCGCTG
CATGATTGCTCGCGGCTGACGCGCCTGCCCAACAGCATCGGCGAGCTCAC
AGCGCTGGTGACGTTGGACCTGAGCTACTGCGCGGCACTCGTTGGCGTGC
CTGACAGCATTGGCGATCTTGCGGCGCTGACGACGCTCGAGCTGTGCTAT
TGCGACAGCCTTGAAGCACTGCCAGACGCCATCGGCAATCTGGCGGCGCT
GAGGACGCTGGAACTTGCGTATTGCAGATCTCTGCAGAGCGTGCCAGCCA
GCATCGGCGCACTGACGCAGCTGAGTGCGCTCGCCTGCACAGCTGCCGCC
ACGTGCCTGCCGGACGCGATAGGCGAGCTGCGCGCGCTGACGCTGCTGGA
CCTGTGCGGCTGCTATGCGCTGACGCGGCTGCCCGACAGCATCGGCGGCC
TCCGCGCGCTGACGCAGCTGAAGATGTTCGGATGCGAGTCCCTCACAGCC
CTGCCGGAGTCGTACGGCGATCTGGCGGCGCTGACGGACCTGGACCTGCA
TGACTGCGGAGCGCTGACGCGGCTGCCGGACAGCATCACTCGGCTGGCGG
CGCTTCAGCGCGTACGCATCGTCAACTGCATGGCGCTGCGGAACAACACC
GCCGCGCTCGTTTGTAAGTCTTGGGGATCCGGCATCTTTGCTGTCGTCCC
CTGA
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